TCONS_00028711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028711
Unique NameTCONS_00028711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028711 ID=TCONS_00028711|Name=TCONS_00028711|organism=Clytia hemisphaerica|type=transcript|length=432bp
AAACTTTTGTCACATGTAATGTCTACCTTAACAAAACTGTTGTCACTATC
CCCTACACCATGACTTTGAGCCATAAAAGATTCGGATGTAGGTGTCACGT
CAGCGGGGTATACAGGAGAGTGGATTATGGTTTTCACTTGGATAAGAAAG
TCGAAGATTGTTCGAATTGTACTTTTTATGGAAACTGTACATTCGGTAAC
ACAACCACTGAAAGTCCTGTTACTACACCAATCTTATCATCTAGCACCTC
CATTACCAGTACACAATCACTTACTGTCAATACTGAAACACTTGAACCAA
TATTGACGGCATCCAGTATTCCATGTTCGGCTCATATTTCGACTGTTACC
GTTCACACTTGCCCTTCAACCACCATGATAGTGCCTTCTTCGTCGAAACA
TGTTCCAAGTAACACTGTTTCACCGAGCACGA
Run BLAST on NCBI

protein sequence of TCONS_00028711-protein

>TCONS_00028711-protein ID=TCONS_00028711-protein|Name=TCONS_00028711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
TFVTCNVYLNKTVVTIPYTMTLSHKRFGCRCHVSGVYRRVDYGFHLDKKV
EDCSNCTFYGNCTFGNTTTESPVTTPILSSSTSITSTQSLTVNTETLEPI
LTASSIPCSAHISTVTVHTCPSTTMIVPSSSKHVPSNTVSPST
Run BLAST on NCBI

transcript from alignment at sc0000698:78293..78724

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028711 ID=TCONS_00028711|Name=TCONS_00028711|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0000698:78293..78724 (Clytia hemisphaerica)
TCGTGCTCGGTGAAACAGTGTTACTTGGAACATGTTTCGACGAAGAAGGC
ACTATCATGGTGGTTGAAGGGCAAGTGTGAACGGTAACAGTCGAAATATG
AGCCGAACATGGAATACTGGATGCCGTCAATATTGGTTCAAGTGTTTCAG
TATTGACAGTAAGTGATTGTGTACTGGTAATGGAGGTGCTAGATGATAAG
ATTGGTGTAGTAACAGGACTTTCAGTGGTTGTGTTACCGAATGTACAGTT
TCCATAAAAAGTACAATTCGAACAATCTTCGACTTTCTTATCCAAGTGAA
AACCATAATCCACTCTCCTGTATACCCCGCTGACGTGACACCTACATCCG
AATCTTTTATGGCTCAAAGTCATGGTGTAGGGGATAGTGACAACAGTTTT
GTTAAGGTAGACATTACATGTGACAAAAGTTT

Coding sequence (CDS) from alignment at sc0000698:78293..78724

>TCONS_00028711 ID=TCONS_00028711|Name=TCONS_00028711|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0000698:78293..78724 (Clytia hemisphaerica)
CGTGCTCGGTGAAACAGTGTTACTTGGAACATGTTTCGACGAAGAAGGCA
CTATCATGGTGGTTGAAGGGCAAGTGTGAACGGTAACAGTCGAAATATGA
GCCGAACATGGAATACTGGATGCCGTCAATATTGGTTCAAGTGTTTCAGT
ATTGACAGTAAGTGATTGTGTACTGGTAATGGAGGTGCTAGATGATAAGA
TTGGTGTAGTAACAGGACTTTCAGTGGTTGTGTTACCGAATGTACAGTTT
CCATAAAAAGTACAATTCGAACAATCTTCGACTTTCTTATCCAAGTGAAA
ACCATAATCCACTCTCCTGTATACCCCGCTGACGTGACACCTACATCCGA
ATCTTTTATGGCTCAAAGTCATGGTGTAGGGGATAGTGACAACAGTTTTG
TTAAGGTAGACATTACATGTGACAAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016287XLOC_016287Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028711-proteinTCONS_00028711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028711-exon-sc0000698-1491911889:78293..78724TCONS_00028711-exon-sc0000698-1491911889:78293..78724Clytia hemisphaericaexon
TCONS_00028711-exon-sc0000698-1510915933:78293..78724TCONS_00028711-exon-sc0000698-1510915933:78293..78724Clytia hemisphaericaexon
TCONS_00028711-exon-sc0000698-1575043694:78293..78724TCONS_00028711-exon-sc0000698-1575043694:78293..78724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000698supercontigsc0000698:78293..78724 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.775704	1.0808	1.40986	2.14546	0.678148	0.613618	1.14892	1.20658	2.32485	0	0.741685	3.28004	9.44989	0.180677	0	0.119431	0.122412	35.8533	77.5134	0	0.225084	0.547239	0.663359	0.512433	0.457335	0.436296	1.62969	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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