TCONS_00028732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028732
Unique NameTCONS_00028732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028732 ID=TCONS_00028732|Name=TCONS_00028732|organism=Clytia hemisphaerica|type=transcript|length=2304bp
agtCAAGATACAACCATTCACGATCAAACAACTTTCCCGTTCCTCCAAGA
CCATCAAACAGACACATTGATGGGTCTCCTAGACGGTTCAATTCACATCA
AATGCACAATGAACATAATCGTTTCCAAGATGATAATATTCAAGGTTTAC
TTGCTATTCAAACTAAACCTCCAGATCTAATGTCTTCGACCCAAGCAGTT
ACAAACCTTTTAATGAACACTACCCTTCAGTCAGACTATATTAATTCACC
AATAAGTACTCGTGGCCGTGGACGTGGTAGAGGTAGCTTAAGACCCGAAC
ACAGACAACCATTAAGAGGAACACCCACCTTGATTTCACAAACAAGGAGT
CCAGTCCTTAGAAATAGAAATACACAAGCTCGTGGCACACTTTTTAGAGG
TGCACCAAACAGAGGTACAAATAGAGGAACACCAAATCGTACTTCCTTTG
ATAGAAGGAAAAGTTTTGAAGACCGTAGAAAAAGTATCGAGGATAGAAGA
AAAAGTAATGAGGTCAGGCGCAGCAGTGCTGATGGTAGTAGCTCATCCAG
TAAAACAACAACTAGCCAATGTATTGAAAATTCCAAAGAGGCACCCTTAA
CTGATATGGAAAAGGAAGCAATGAACTTTGATCTACCTCAACTGTTTTTC
GAAAGGATCAAACCTTTGACAATGACACAAGTTGCGCTTGATGCTGCCCT
TGATTATACACGCAAAGAAATGGACAAAAAGCGAGGTGGGAATACACCTC
TAAGCAATTTGAAATTCAAAGAAGGAAATCAAGCCTGTAGAATGTGCAGA
GAAAACTTCAAAAACGCAGATGAATATTACGCTCACAATAAATCTTTCGA
GCACAAAGAATTGGAACACTTGTGCAAGGTCAGGAAAGAACAAGCTCGGT
TAATccttcaaagaaaaatcaccAGGCTATCCAAAAACTTTAAAGAAGCG
TCGAAGGAAGAGCAGTCACAATCATCAAGTCAAAAATCATCTTTATTATC
ACCAAAAGGAGAAAATAGCAAGAAACCAATATCCAATGGAAGTGTTTCGC
CCCCTGATAAAGATATGGCACTTATATTCAAGgctgaaaatgaaCTGAAC
TTAAAGCCAACCACAATGGAACTGGATCCTTACATTTTGGGTGTCTACGA
AAGTGTAATGAAGGAATATTGGCCCAGCCCAAAAACTGAACTCTATTGTA
GGGTTTGCAATTACCAAGAGTTCAAAAGTATGACCGATTTTGAAGAACAT
AAGAAGATGCCTAATCACATTGACCGACAAGCATGCTATGATGATGCTTT
TTGCTTGTATTGTCAAATTCACAGTGGAAATGCTACAAGTATGAGAGAGC
ATGAAAAATCGATTGAACATGAAGAGATAAAGAACCGAATGGATAAAGCC
AAACAATGTGCCATTGAACACTGGCATCGAATCAACAATTTTGAATTACC
AGAacactttaaaaaagaaaaagaaaaggcagAACAACAGATAGGTACTA
AAAGAAGTGCCCCATATCCACCAGAAAAATCCGATCAAAGTCCAACAAAA
AGACAAAACCTATCATCTCCTACATCTACACATAAAACGCCCTTACCGCC
ACCGCCTACTCCACCCGCCGTTAAATCTCAAGCCGCCAGAACTATTGAAG
TGTTGGtatcaaaaaataacaaaaaatcaaCCGAATCTAAAAATAATGAT
AATCAACAATCCAGTGAAAGCTCTGACTCGGAAAAAAGAACAGACTTTAA
ACCAGCACCAAATCTTCGAAGAATCCCCAAGCTACACGATCAACCCCTAT
TACCAAGAGAAAAAGTGTGGTTCGTCCCAGTCAGTGCAGTTATGTGTGTA
GCATGTCAAGTTTTCGTTgaggaaaataaacaaaaagccCATTGTAGAGA
GATAATTCACAACACCAATGTCATCAAGTTTAAACGACAGctcAACATGT
GAAGGCATCATTGATAAAAGTCTTGGGTGGTAAGATTCCCTCCTTTTTTG
GTAACAGCGTAAGTTAATCTCACTCACACAGTCTGAATAACTTATTCTTT
ACAAAAATTATCATCAGTCATGTGCATTGTCTGGCGTGGTGCATCATGTA
CAACAACAAATTCAAGATGCTGCATTTCTACTACCACAGCAGGGCTACCA
TCGGAATAAATGATTCATTCATGCTGGACCTCTATCCATCGTTAATTGAT
TGGTTAAACGTTGGGCAAGGATCTAGCAATAGCAATTGGTATTTGTCCAG
ACTCAGCTTATTCTCGATGATAAATATCTTTGTACTCGTTACTTCACATC
TTCC
Run BLAST on NCBI

transcript from alignment at sc0000700:161823..167692-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028732 ID=TCONS_00028732|Name=TCONS_00028732|organism=Clytia hemisphaerica|type=transcript|length=5870bp|location=Sequence derived from alignment at sc0000700:161823..167692- (Clytia hemisphaerica)
AGTCAAGATACAACCATTCACGATCAAACAACTTTCCCGTTCCTCCAAGA
CCATCAAACAGACACATTGATGGGTCTCCTAGACGGTTCAATTCACATCA
AATGCACAATGAACATAATCGTTTCCAAGATGATAATATTCAAGGTTTAC
TTGCTATTCAAACTAAACCTCCAGATCTAATGTCTTCGACCCAAGCAGTT
ACAAACCTTTTAATGAACACTACCCTTCAGTCAGACTATATTAATTCACC
AATAAGTACTCGTGGCCGTGGACGTGGTAGAGGTAGCTTAAGACCCGAAC
ACAGACAACCATTAAGAGGAACACCCACCTTGATTTCACAAACAAGGAGT
CCAGTCCTTAGAAATAGAAATACACAAGCTCGTGGCACACTTTTTAGAGG
TGCACCAAACAGAGGTACAAATAGAGGAACACCAAATCGTACTTCCTTTG
ATAGAAGGAAAAGTTTTGAAGACCGTAGAAAAAGTATCGAGGATAGAAGA
AAAAGTAATGAGGTCAGGCGCAGCAGTGCTGATGGTAGTAGCTCATCCAG
TAAAACAACAACTAGCCAATGTATTGAAAATTCCAAAGAGGCACCCTTAA
CTGATATGGAAAAGGTGAGCTATATTGATGTTATTTTTATTCTGGTAATA
CCAATCAGTGCCAAGAAGCAGAATTATTTTGTAATGTTATTAGTAACGAA
ATTAACAAACTGAACAAATTTGAAATCAGGATTTCAAAATTTAAAACTTG
AAACTTACACATCTAGCACAAGAAAAAAAGCTAAAAAATGATAAAAAGTT
TAAAGATTCTGAAGTATAATTTTCAAAATTGCCTTGNGTGGTCACCTAAA
TTCACGTAAAAACTGTACCAATGTATATTTTAAGTGATTACACTGATAGA
TTTTTCCTTTACCTTTTAGGAAGCAATGAACTTTGATCTACCTCAACTGT
TTTTCGAAAGGGTAATTTTTACTTTTCTATTAAAATTTGCTCTGAATCAA
GATCTCGAAAAATACAAACAGAGTTCCTGTTGCATTTCCATAATTCAGTG
CTAAGATTACTTCTAATTAATTTCAGTCTGGCAAGTTTTAATTTTTTAGT
TAATTTTTAGTATTTTGTTTTGTTATTGATTTTCATTGATAGATCAAACC
TTTGACAATGACACAAGTTGCGCTTGATGCTGCCCTTGATTATACACGCA
AAGAAATGGACAAAAAGCGAGGTGGGAATACACCTCTAAGCAATTTGAAA
TTCAAAGAAGGAAATCAAGCCTGTAGAATGTGCAGAGAAAACTTCAAAAA
CGCAGATGAATATTACGCTCACAATAAATCTTTCGAGCACAAAGAAGTAA
GTATTTTCAAGTCAAAACTTCTAAATGTTTTACATGGAAACCATCACATT
TGTGGATGTTTTTTTTATTTCTAGCTTGATAGAGGAAGATTTTGTCTCTT
TTTATTGGAACTTGCTCAAATAGTATACTATAAATTGAATTTTCATTTTT
ATTTTGTATATAAGTATCAAGTATTGATCTCATCAAAAGAGAGAAAATTT
TTTGATTTTTAAAACTATTATGAATCCTACTTTGGATCCTGCCTCGACAT
CTCACCATAAACTACATTTTTGCATCTAAAAAAAATTGTACTTTCTGTGT
ATAATGAAAAAATGACTAACTTGTACTCTTTTGTCTTCCTATAAAACAGT
TGGAACACTTGTGCAAGGTCAGGAAAGAACAAGCTCGGTTAATCCTTCAA
AGAAAAATCACCAGGCTATCCAAAAACTTTAAAGAAGCGTCGAAGGAAGA
GCAGTCACAATCATCAAGTCAAAAATCATCTTTATTATCACCAAAAGGAG
AAAATAGCAAGAAACCAATATCCAATGGAAGTGTTTCGCCCCCTGATAAA
GATATGGCACTTATATTCAAGGTAAAGTTTGTTTCAAATTTTTCTTTTTG
TAGTTATTCTTAATTGTAGTTTTTCTCTGCAAATTAAGTTATAAGATTCC
CTTTGAAGTTTAAATACATTCGAGTTACTAAGACGAGTTGGCAATAGAAT
GTAAAAGTAGGACATGAATCAGGAAGATTCTTCTAATCTTAATTGTTCTT
CTACTCTAATTTACATAACTATCCTTTGGCTTTGTCATAGTGTTACTCCC
CTTTTTTTTAAAAGGGGGATCCAACTTTTCCAGAATGCAGAAGTGCTTTA
TAGGAGGGATAGGAGATTTTACAAATAAAAAGGGGTTTGAAATTTTATGG
GGGGTCAAGTAAAAATCCCCCCTGTAGGGGGGGGGGAACAACTTTTGGTC
AAAATATCTATCATATTTTATATTGATTAAGATTTGCTGTGGGACAACTA
AAAAACAACGTTTGTTTATAATTTTTAATACAAACTTTTATTTTTTTCGA
AATTTATAGCGGTAAATTTTAGTTTCAATCTGTCATTTGTGTAAAAACCA
GGCGAGCTGCTCAAGGTCTCGCAACTTTGGTAGGATTTGTTGGCTTCAAA
TCCTACCAAGGAGATTCGATTCTAGCCCTTCGGGCTTATACTTCATTGGT
TCAGACCCCTCCGCACACTATGTTTGTAATTTTAGGCTGAAAATGAACTG
AACTTAAAGCCAACCACAATGGAACTGGATCCTTACATTTTGGGTGTCTA
CGAAAGTGTAATGAAGGAATATTGGCCCAGCCCAAAAACTGAACTCTATT
GTAGGGTTTGCAATTACCAAGAGTTCAAAAGTATGACCGATTTTGAAGAA
CATAAGAAGATGCCTAATCACATTGTAAGTTTATGTAAATCTGAAGAAAT
CCTCGTCAATCATAAATGGAATTTTTTGTTCGTTACAAATTATGATATCA
AAATCGTGCTTATACCGGTTGACCCACAAAAAGGCCAAATTTCATTGGTC
AACCAGTACATCTGCTTAAGGGCTACTTAGACTACACATAATATTTGTGA
GCAATATTCGGCAATATAGTTTTCGAACCGTAATGTACGGAAACTGGTGA
TCTATTATAAAAAGGAATTTTTTTCTGAAAGCCAATCCCCCTATATTGTC
GGAATATTGCAAATCAAGCTGACAATATATTGCAGACACCTTTTCAATAT
ATTGCTGGCATTCAGCAATATTTTATCAATATATTGCAGAAAATGTTCAT
CAACATCCGTTTCTAGTTTGTAAATAGAAATTATTCTTTATGGCCAGTTA
TCCAATGCTATTGATATTTCTTTCCATTGTATTCTCTCTGTATATTATTA
TTTGTTAATTATTTAGGACCGACAAGCATGCTATGATGATGCTTTTTGCT
TGTATTGTCAAATTCACAGTGGAAATGCTACAAGTATGAGAGAGCATGAA
AAATCGATTGAACATGAAGAGGTATTATTTAGGGACTGTCTTTACACTTG
ACGTGGTGTTTGTTTTTTCGACATAACTTTTTTTCCCGAAATTTTTTCAT
GATAAAAGTATATATTTCCTGAAAGCCAATAAAATTATATATCAAATGCA
ATCAATTAGGATTATTATGCACAAAGTGAGTAGAAATTATTACAAGGCTT
TGAAAAATACAACGTTTGTTAACTTCAAAGAGTTCCACCTTCCCAACCAC
TTTCCATTTGATTTTCTTTCCTTCTAACTAAGCAAAAGTTGTTCTAAAAA
AGGTTGCCTCGTTTTTTTGAATTAGGTCCTAGATAAAAAATAAACAGACT
TTAGTCTTTATCCCTCAATAAAAAGATAAATAGGACCTGAATTGAAAAAA
TGAGGCAGCCTTTTTTAGATAAATCTTTTACCTGTCATTAAAAAAAAGCC
GCATCGAATTTGTTATAACTTGTGGGAAAGAGGAACTTTTTGAAGGTAGG
AAGGTATGCTCAAAAAAGTTTTTTAAAACTGATTTTGAGTGTAAAGACAG
TCCTTAATCTAATGAGCATTGCCTTAGATGTCAATAGGTCTTTTTAGCAA
TCCAATTCCTTGATTTCTTTTCATTAATAGTTTTTTTTAATCTCTGAGCA
GATTCTGAAACTTTGCGCATGGCACGTATTTATTCTAAAGCCCATGACTG
CGTAGAGAATTTTGCCTAGGTTGGTACACTGCTTTGATTTTTTCCATCCA
GATTTGGGTGAAAATATTAAAGGAGATTTTGAGCACGGTGATTGGCAGTG
ATAAAACAAAGCAAATTGCACCAAAATCAAAAGTCAATCACAAGTCAATC
ATAAACGTTCAAACCCTGTCACTTTTACATTTTTGAACAAAAAGCAACAC
GGTTTTAATCATTTTGGCTAAATAACCAGGTCAGATTGTCACATCTGACA
ATTCTTTCTAAAGCAGGGAGTAGCGTGCACAGAATGGATGATCTGTAATA
AGATTTCGATTTTCTTCTTCATTGAATTATCATCATTTGTTTTCATTTAA
TCAGATAAAGAACCGAATGGATAAAGCCAAACAATGTGCCATTGAACACT
GGCATCGAATCAACAATTTTGAATTACCAGAACACTTTAAAAAAGAAAAA
GAAAAGGCAGAACAACAGATAGGTACTAAAAGAAGTGCCCCATATCCACC
AGAAAAATCCGATCAAAGTCCAACAAAAAGACAAAACCTATCATCTCCTA
CATCTACACATAAAACGCCCTTACCGCCACCGCCTACTCCACCCGCCGTT
AAATCTCAAGCCGCCAGAACTATTGAAGTGTTGGTATCAAAAAATAACAA
AAAATCAACCGAATCTAAAAATAATGATAATCAACAATCCAGTGAAAGCT
CTGACTCGGAAAAAAGAACAGACTTTAAACCAGCACCAAATCTTCGAAGA
ATCCCCAAGCTACACGATCAACCCCTATTACCAAGAGAAAAAGGTATAGA
GTTCTTCCTTCTTACAGCGGCTTGAGAACATAACTTAGGAATTTAGATTT
ATTATTCAATTTGCCACTAACAATGATCAAAAGCATATAACTCAGTTCAT
TCGATGGATCAAATCCTGTGAAAATGAATTGGTAGATAAAAATATTTGAC
AATCGAAAGAGCCTCAAAAAAGACAATCGGGTTTCCTCACACAGCTCAAT
TTTCAATCATTTTTTCAATGCTCTTTGGAAGATTACTCGTTGGAATAATA
CCATTTCTAATTTGAATATCTTTTTTAAAACATGATAGTTGTAGATAACT
TAATAATTTAATTACACAAATTTCAGTGTGGTTCGTCCCAGTCAGTGCAG
TTATGTGTGTAGCATGTCAAGTTTTCGTTGAGGAAAATAAACAAAAAGCC
CATTGTAGAGAGATAATTCACAACACCAATGTCATCAAGTTTAAACGACA
GGTAATTTATTTCTTTCAACGCTTACACGTCATAAAGTTAATATCTCGTG
TGTGACTGTTCTTTTTTACCAGAGGGAGGATTTTAACAATTCTATTAATT
TTTGTTTACTTTTATTTGGGCAGGTATATGCACTTTAGATTAATAAAATA
GTTCAATGGCAATTGGTCACTTTGACTATAATGTTTTGTTCCTTTATTTT
TTTCAGCTCAACATGTGAAGGCATCATTGATAAAAGTCTTGGGTGGTAAG
ATTCCCTCCTTTTTTGGTAACAGCGTAAGTTAATCTCACTCACACAGTCT
GAATAACTTATTCTTTACAAAAATTATCATCAGTCATGTGCATTGTCTGG
CGTGGTGCATCATGTACAACAACAAATTCAAGATGCTGCATTTCTACTAC
CACAGCAGGGCTACCATCGGAATAAATGATTCATTCATGCTGGACCTCTA
TCCATCGTTAATTGATTGGTTAAACGTTGGGCAAGGATCTAGCAATAGCA
ATTGGTATTTGTCCAGACTCAGCTTATTCTCGATGATAAATATCTTTGTA
CTCGTTACTTCACATCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016295XLOC_016295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028732-exon-sc0000700-1575043694:167079..167692TCONS_00028732-exon-sc0000700-1575043694:167079..167692Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1575043694:166732..166773TCONS_00028732-exon-sc0000700-1575043694:166732..166773Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1575043694:166347..166550TCONS_00028732-exon-sc0000700-1575043694:166347..166550Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1575043694:165772..165993TCONS_00028732-exon-sc0000700-1575043694:165772..165993Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1575043694:164919..165107TCONS_00028732-exon-sc0000700-1575043694:164919..165107Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1575043694:164322..164426TCONS_00028732-exon-sc0000700-1575043694:164322..164426Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1575043694:162850..163288TCONS_00028732-exon-sc0000700-1575043694:162850..163288Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1575043694:162392..162516TCONS_00028732-exon-sc0000700-1575043694:162392..162516Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1575043694:161823..162186TCONS_00028732-exon-sc0000700-1575043694:161823..162186Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:167079..167692TCONS_00028732-exon-sc0000700-1510915933:167079..167692Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:166732..166773TCONS_00028732-exon-sc0000700-1510915933:166732..166773Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:166347..166550TCONS_00028732-exon-sc0000700-1510915933:166347..166550Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:165772..165993TCONS_00028732-exon-sc0000700-1510915933:165772..165993Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:164919..165107TCONS_00028732-exon-sc0000700-1510915933:164919..165107Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:164322..164426TCONS_00028732-exon-sc0000700-1510915933:164322..164426Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:162850..163288TCONS_00028732-exon-sc0000700-1510915933:162850..163288Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:162392..162516TCONS_00028732-exon-sc0000700-1510915933:162392..162516Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1510915933:161823..162186TCONS_00028732-exon-sc0000700-1510915933:161823..162186Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:167079..167692TCONS_00028732-exon-sc0000700-1491911889:167079..167692Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:166732..166773TCONS_00028732-exon-sc0000700-1491911889:166732..166773Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:166347..166550TCONS_00028732-exon-sc0000700-1491911889:166347..166550Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:165772..165993TCONS_00028732-exon-sc0000700-1491911889:165772..165993Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:164919..165107TCONS_00028732-exon-sc0000700-1491911889:164919..165107Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:164322..164426TCONS_00028732-exon-sc0000700-1491911889:164322..164426Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:162850..163288TCONS_00028732-exon-sc0000700-1491911889:162850..163288Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:162392..162516TCONS_00028732-exon-sc0000700-1491911889:162392..162516Clytia hemisphaericaexon
TCONS_00028732-exon-sc0000700-1491911889:161823..162186TCONS_00028732-exon-sc0000700-1491911889:161823..162186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000700supercontigsc0000700:161823..167692 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2942	12.7141	4.97772	3.50134	35.852	27.5504	19.1079	19.5885	10.0424	12.7872	15.4381	8.47096	10.7787	13.1245	14.3163	19.9653	7.74196	17.309	8.86727	8.45291	11.7963	12.431	11.3354	13.9328	29.1106	27.8631	3.73669	3.1	7.93209	9.41249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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