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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028744 ID=TCONS_00028744|Name=TCONS_00028744|organism=Clytia hemisphaerica|type=transcript|length=2706bpRun BLAST on NCBI transcript from alignment at sc0000703:59457..98820+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028744 ID=TCONS_00028744|Name=TCONS_00028744|organism=Clytia hemisphaerica|type=transcript|length=39364bp|location=Sequence derived from alignment at sc0000703:59457..98820+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028744 vs. Swiss-Prot (Human)
Match: PPWD1 (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1) HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0 Identity = 365/580 (62.93%), Postives = 443/580 (76.38%), Query Frame = 2
Query: 167 LEFEQTYLKNLPSAETYEKSFMHRDSVTHVQVTKTDFIITASCDGHVKFWKKKESEIEFVKHFRAHLGAIESCCVSSDGALYASAGVDKALKVFDVINFDMINMMKLDYQPSTCEWVFKKGDEISAIAIAEKEGNLINIYDGRGVNTPIHIV-KLHTKPITCMRYNPTFDVAVSCDHAGMVEYWSGQKKDFAFPKDVKFEYKTDTDLFEFVAAKTIVTSLNFSPDGKQFVTVSPDRKIRLFRFLTGKKTRVFDENLKTFTAMQQEKQILPNMEFGRRMASERELEKSEAFNTVN------------------PVINIFSNTCVKILGKKENVRFLNIALYQGNPNRPTAAITMEMRASDNPSLEKLSTDPTVVCTGFKKNRFYLFSRREPDQDQT---DRDVFNEKPSREEIVAATQEASAKVLAEKLVMHTSMGDIHFKLFPKECPKTVENFVTHCRNGYYNGHIFHRIIKQFMLQTGDPLGDGTGGESIWGGEFEDEFHHTLRHDRPYTLSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKGMDICQQMSMVKTNSRDDKPYDEIKIINMLVK 1840
LEFE+ YL NLPSA YE+S+MHRD +THV TKTDFIITAS DGHVKFWKK E IEFVKHFR+HLG IES VSS+GAL+ S G DKA+KVFDV+NFDMINM+KL Y P CEW++ GD IS++A +EK I IYDGRG N P+HI KLHT P+T +R NP + VS D +GM+EYW+G ++ FPK+V +EYKTDTDL+EF K TS+ FSPDGK+ T+ DRK+R+FRF+TGK RVFDE+L FT +QQ +Q LP+MEFGRRMA ERELEK +A +N VIN+ +N CV+ILGK+EN+R + +AL+QG + AA T+EM+AS+NP L+ + DPT+VCT FKKNRFY+F++REP+ ++ DRDVFNEKPS+EE++AATQ K +++ ++HTSMGDIH KLFP ECPKTVENF H RNGYYNGH FHRIIK FM+QTGDP G G GGESIWGGEFEDEFH TLRHDRPYTLSMANAG NTNGSQFFITVVPTPWLDNKHTVFGRV KGM++ Q++S VK N + DKPY+++ IIN+ VK
Sbjct: 67 LEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGSDRKVRIFRFVTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIEMKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNEKPSKEEVMAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646 The following BLAST results are available for this feature:
BLAST of TCONS_00028744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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