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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028753 ID=TCONS_00028753|Name=TCONS_00028753|organism=Clytia hemisphaerica|type=transcript|length=1190bp
tttcagtgacattttaaaaaagaaaagaaaaaattcaaaattacagAATT
ATGAAAGAATTAATATTTCAAGTCCCCATATCTGAAAAGGCCGTCAACGT
TCGAACGCTTTCATTAGACAACGCTGTCATGATTTGGGTAGGTGAGACTA
ACGAATTCGATAAATTAAACATTGCCTCGATAAGTCAAGACAtgaagatg
acgtcatcggttgatttgattggtcaaaGTTCATTGACAATGAGTCAAAA
ATTGTGCAAAAGATTGAAAAAGCAAGTGCTTCTAAGCTATAATGTGGCGG
AGGAGAATCTGTCGGAAGCTAGTCTAACTGAAGACTTGATTATGAAAGAT
TTTTTGAATAAAGATAAGGCGAAATAACAATATGAAAACTAACGAGAAAG
GAACGTTACCAGTAAATTCCCTTATAGAGGACCAAGATATATTTTACATG
AAACAAGCTCTCAAGCTCTCCAAAGAAACTCTTGAAAGACGTGAAGTCCC
TATCGCCTGTCTTATTGTTTACAAGAATAACGTCATTGCTCGTGGCTCTA
ACGACGTCAACCGTACGAAAAACGCTACACGGCACGCTGAGCTTTTGGCG
ATCGAAGAGGTACGTGAATATGCAAAAACGGAATCACTAGACGTGACGCA
AGTTTTTAAAGACTCTACTTTATACGTGACAACGGAGCCTTGTGTTATGT
GCGCGGCCGCTTTAAGGCTAGTCGGTTTAACAAACGTTGTATACGGATGT
GGGAATCAACGTTTTGGAGGTTGCGGATCAAGGCTAGATGCTCATTCGAG
GATGCCTAGGAACAATACTACAGAAGAAGTACCACCTGTTGCGAAACGAT
TAAAAATGGACGCTCTATCTGGTAGTTGCTTGATTGCTATGGGTGATCCT
TTAGTTTGTCGGACAGGCATAATGGCGGATGAAGCTGTGAATATGTTGAA
ATTATTTTACGCCGGTGAGAATCCAAACGCGCCGAACCCGAAAGATAAGA
GTGGGCGAATGGAAGCATTAAGGAAAGAAAAAGAGAGTTGAGGATGTAAG
CTACGTGAGTGAAAAGGTCATGGGCTGAAGACTGGTagatcattgagttt
caagccgaaggctagaggtcaatctccttggtaggatttgaagccaacaa
atcctaccaaagttgcgcggccttgagcgacccgcctggt Run BLAST on NCBI protein sequence of TCONS_00028753-protein >TCONS_00028753-protein ID=TCONS_00028753-protein|Name=TCONS_00028753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MKTNEKGTLPVNSLIEDQDIFYMKQALKLSKETLERREVPIACLIVYKNN
VIARGSNDVNRTKNATRHAELLAIEEVREYAKTESLDVTQVFKDSTLYVT
TEPCVMCAAALRLVGLTNVVYGCGNQRFGGCGSRLDAHSRMPRNNTTEEV
PPVAKRLKMDALSGSCLIAMGDPLVCRTGIMADEAVNMLKLFYAGENPNA
PNPKDKSGRMEALRKEKES Run BLAST on NCBI transcript from alignment at sc0000703:136302..138532+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028753 ID=TCONS_00028753|Name=TCONS_00028753|organism=Clytia hemisphaerica|type=transcript|length=2231bp|location=Sequence derived from alignment at sc0000703:136302..138532+ (Clytia hemisphaerica)
tttcagtgacattttaaaaaagaaaagaaaaaattcaaaattacagAATT
ATGAAAGAATTAATATTTCAAGTCCCCATATCTGAAAAGGCCGTCAACGT
TCGAACGCTTTCATTAGACAACGCTGTCATGATTTGGGTAGGTGAGACTA
ACGAATTCGATAAATTAAACATTGCCTCGATAAGTCAAGACAtgaagatg
acgtcatcggttgatttgattggtcaaaGTTCATTGACAATGAGTCAAAA
ATTGTGCAAAAGATTGAAAAAGCAAGTGCTTCTAAGCTATAATGTGGCGG
AGGAGAATCTGTCGGAAGCTAGTCTAACTGAAGACTTGATTATGAAAGGT
ATTATCAATCGATTGGCTGCGGATCAAGGCTAGATGGTGGAATCAAAATG
TTTGGAGTAGAGTCTAGCGgtgaaaaaattcttccaaTATGCTGCTGTTG
TTGAAATGAAGTCCATATTGTATGAGAATACCCCTTTCTACATTATCCCT
TGTAAATATTATCTCACTTTAGTTTTGGTGAGCTCGGGAAGAGTAACAAC
ACGTGTATAAATGGCGCAATTCAAGCTtaaatatttcagaattttcGTTT
TTAGTATTCTTAAGATATGTGCAAATTTTCTGAAGTGAAAATTCTCTAAA
ATTCTGAAAAGGGTTTCGTCATTCATTATGCAGCCACTTTAGTTTTAAAC
TTTTCTTGCTAAGGTGATACTTGTTGCGACTAGCTCATCAATATTAGTTT
GGTCACCGGTCGGTCAATTGTGGCTGTTTCAAGTTCCCGgggggtatgtc
cgagccaaagttcgaaGATTTGACTGAATTAGACGTTTTGCGACCCTTTG
GAAACCATTTTTCCAATTGTTATTGTTAATTTAtcgtttttgtacccctt
tgaaaGACTTTCCAGGATTTACCCTTTATAGCTTTCACATACCCGACAAC
CATCTTGCccaagtaccccctccccccccaaGACTAATGCATTCCTTACT
TCTGTTAGCAGTCATTTCTGACCGTCCCTTTTAATCCATATTTCACTCAT
TATTAGCTGCCTTTAATTCATATTTCGTGTACGTTATTGGATTTAATTTT
CGTGGatattaattttagcgtttttcgcgtgTTTTTTTGGCCAaaccgcg
aaatacaattttttccaattttatcaataagtttgaaaaatccctaggaa
gatgaaagaaatttgtctaaaaagggcaaaaaccgtgaaaattaaaaccc
gcgaaatgcaatttttccgatttttttttcgaccggGAATATTAgtttcc
gcaaaaattagttccaataagatAGGTTTTATAATTCATAGAAGTGTATC
TCTCAGGTCTATCTTACATCGTTTTATATTCTGTTGTAGATTTTTTGAAT
AAAGATAAGGCGAAATAACAATATGAAAACTAACGAGAAAGGAACGTTAC
CAGTAAATTCCCTTATAGAGGACCAAGATATATTTTACATGAAACAAGCT
CTCAAGCTCTCCAAAGAAACTCTTGAAAGACGTGAAGTCCCTATCGCCTG
TCTTATTGTTTACAAGAATAACGTCATTGCTCGTGGCTCTAACGACGTCA
ACCGTACGAAAAACGCTACACGGCACGCTGAGCTTTTGGCGATCGAAGAG
GTACGTGAATATGCAAAAACGGAATCACTAGACGTGACGCAAGTTTTTAA
AGACTCTACTTTATACGTGACAACGGAGCCTTGTGTTATGTGCGCGGCCG
CTTTAAGGCTAGTCGGTTTAACAAACGTTGTATACGGATGTGGGAATCAA
CGTTTTGGAGGTTGCGGATCAAGGCTAGATGCTCATTCGAGGATGCCTAG
GAACAATACTACAGAAGAAGTACCACCTGTTGCGAAACGATTAAAAATGG
ACGCTCTATCTGGTAGTTGCTTGATTGCTATGGGTGATCCTTTAGTTTGT
CGGACAGGCATAATGGCGGATGAAGCTGTGAATATGTTGAAATTATTTTA
CGCCGGTGAGAATCCAAACGCGCCGAACCCGAAAGATAAGAGTGGGCGAA
TGGAAGCATTAAGGAAAGAAAAAGAGAGTTGAGGATGTAAGCTACGTGAG
TGAAAAGGTCATGGGCTGAAGACTGGTagatcattgagtttcaagccgaa
ggctagaggtcaatctccttggtaggatttgaagccaacaaatcctacca
aagttgcgcggccttgagcgacccgcctggt Coding sequence (CDS) from alignment at sc0000703:136302..138532+ >TCONS_00028753 ID=TCONS_00028753|Name=TCONS_00028753|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000703:136302..138532+ (Clytia hemisphaerica)
ATGAAAACTAACGAGAAAGGAACGTTACCAGTAAATTCCCTTATAGAGGA
CCAAGATATATTTTACATGAAACAAGCTCTCAAGCTCTCCAAAGAAACTC
TTGAAAGACGTGAAGTCCCTATCGCCTGTCTTATTGTTTACAAGAATAAC
GTCATTGCTCGTGGCTCTAACGACGTCAACCGTACGAAAAACGCTACACG
GCACGCTGAGCTTTTGGCGATCGAAGAGGTACGTGAATATGCAAAAACGG
AATCACTAGACGTGACGCAAGTTTTTAAAGACTCTACTTTATACGTGACA
ACGGAGCCTTGTGTTATGTGCGCGGCCGCTTTAAGGCTAGTCGGTTTAAC
AAACGTTGTATACGGATGTGGGAATCAACGTTTTGGAGGTTGCGGATCAA
GGCTAGATGCTCATTCGAGGATGCCTAGGAACAATACTACAGAAGAAGTA
CCACCTGTTGCGAAACGATTAAAAATGGACGCTCTATCTGGTAGTTGCTT
GATTGCTATGGGTGATCCTTTAGTTTGTCGGACAGGCATAATGGCGGATG
AAGCTGTGAATATGTTGAAATTATTTTACGCCGGTGAGAATCCAAACGCG
CCGAACCCGAAAGATAAGAGTGGGCGAATGGAAGCATTAAGGAAAGAAAA
AGAGAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028753-exon-sc0000703-1491911889:136302..136649 | TCONS_00028753-exon-sc0000703-1491911889:136302..136649 | Clytia hemisphaerica | exon |
| TCONS_00028753-exon-sc0000703-1510915933:136302..136649 | TCONS_00028753-exon-sc0000703-1510915933:136302..136649 | Clytia hemisphaerica | exon |
| TCONS_00028753-exon-sc0000703-1575043694:136302..136649 | TCONS_00028753-exon-sc0000703-1575043694:136302..136649 | Clytia hemisphaerica | exon |
| TCONS_00028753-exon-sc0000703-1491911889:137691..138532 | TCONS_00028753-exon-sc0000703-1491911889:137691..138532 | Clytia hemisphaerica | exon |
| TCONS_00028753-exon-sc0000703-1510915933:137691..138532 | TCONS_00028753-exon-sc0000703-1510915933:137691..138532 | Clytia hemisphaerica | exon |
| TCONS_00028753-exon-sc0000703-1575043694:137691..138532 | TCONS_00028753-exon-sc0000703-1575043694:137691..138532 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000703 | supercontig | sc0000703:136302..138532 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0016787 | hydrolase activity |
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00028753 vs. Swiss-Prot (Human)
Match: ADAT2 (tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.844e-50 Identity = 86/184 (46.74%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 445 YMKQALKLSKETLERREVPIACLIVYKNNVIARGSNDVNRTKNATRHAELLAIEEVREYAKTESLDVTQVFKDSTLYVTTEPCVMCAAALRLVGLTNVVYGCGNQRFGGCGSRLD-AHSRMPRNNTTEEVPPVAKRLKMDALSGSCLIAMGDPLVCRTGIMADEAVNMLKLFYAGENPNAPNPK 993
+M++A+ ++KE LE EVP+ CL+VY N V+ +G N+VN+TKNATRHAE++AI++V ++ + ++VF+ + LYVT EPC+MCAAALRL+ + VVYGC N+RFGGCGS L+ A + +P NT G P C G A+EAV MLK FY ENPNAP K
Sbjct: 25 WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLP--NT------------------------GRPFQCIPGYRAEEAVEMLKTFYKQENPNAPKSK 182
The following BLAST results are available for this feature:
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