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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028759 ID=TCONS_00028759|Name=TCONS_00028759|organism=Clytia hemisphaerica|type=transcript|length=2465bpRun BLAST on NCBI protein sequence of TCONS_00028759-protein >TCONS_00028759-protein ID=TCONS_00028759-protein|Name=TCONS_00028759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp MSRQSLLASKDDFKYQQVKMAPVKPEEAEVESNQSNKSYQHIISEAIGDMRun BLAST on NCBI transcript from alignment at sc0000703:168274..186285+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028759 ID=TCONS_00028759|Name=TCONS_00028759|organism=Clytia hemisphaerica|type=transcript|length=18012bp|location=Sequence derived from alignment at sc0000703:168274..186285+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000703:168274..186285+ >TCONS_00028759 ID=TCONS_00028759|Name=TCONS_00028759|organism=Clytia hemisphaerica|type=CDS|length=20943bp|location=Sequence derived from alignment at sc0000703:168274..186285+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028759 vs. Swiss-Prot (Human)
Match: S22AF (Solute carrier family 22 member 15 OS=Homo sapiens GN=SLC22A15 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.602e-31 Identity = 125/468 (26.71%), Postives = 218/468 (46.58%), Query Frame = 2
Query: 326 EAIGDMGRWQAFLIFA-HFTPKIVMAWCMIIISFGGAKTDWWKRTMEIDP--------ITNETLYVNRLKDCSPLGINDSIVYDNTYT-ITAEWDLICGLDYIPTWIKTSXXXXXXXXXXXXXXXXDWIGRQKCSWFAFTLSVVFILIQAFSANWIMMLVCAXXXXXXXXXXXXXNSIYVLEYIGTSWRSAIGFIP--FWASGVVILGGLYSLLPNWRHLCIASAITGAPFIIFMWLTPESIRWLLQHGKTEQAVEVVEKIAKHNKRAKPDLTDLKAVADQESSKLKENALKYNYMTLFKFKATRWRCPLFGFFWFTCAYSYYALTFGVSLLSGNPAANMSLMGVGEGCSLIMCWALTKK--FGRKYTTVILFTCTALSSFVITIGYATKAEDSETIKTV----CALVSRLFLSGAWGSLIIYTVEIFPTMLRSSAYGFVSICGRIGGIVAPQSAPLYDVAKHLPYTI 1675
+A+G+MG +Q +L F ++ +A I+I+ GA + E+ P + + + L + I+ + + +++T I +EW LI Y + + GV VG GQL D GR+K F L ++F + FS ++ V F+VG+ GG ++ + + E +GT++ + G I F+A G+ L + +WR L I + G + PES RWL G+ +A E + IAK N++ K + + + +E +++ LF+++ + F WF C+ YY LT L G+ AN++L G+ E S +C L + FGRK T L+ ++ + + +D+ V +L+ +L +S A+ + IYT E++PT++R+ G S+ R+GGI+AP L V LP+ +
Sbjct: 8 QAVGEMGIYQMYLCFLLAVLLQLYVATEAILIALVGATPSYHWDLAELLPNQSHGNQSAGEDQAFGDWLLTANGSEIHKHVHFSSSFTSIASEWFLIANRSYKVSAASSFFFSGVFVGVISFGQLSDRFGRKKVYLTGFALDILFAIANGFSPSYEFFAVTRFLVGMMNGGMSLVAFVLLNECVGTAYWALAGSIGGLFFAVGIAQYALLGYFIRSWRTLAILVNLQGTVVFLLSLFIPESPRWLYSQGRLSEAEEALYLIAKRNRKLKCTFS----LTHPANRSCRETG---SFLDLFRYRVLLGHTLILMFIWFVCSLVYYGLTLSAGDLGGSIYANLALSGLIEIPSYPLCIYLINQKWFGRKRTLSAFLCLGGLACLIVM--FLPEKKDTGVFAVVNSHSLSLLGKLTISAAFNIVYIYTSELYPTVIRNVGLGTCSMFSRVGGIIAPFIPSLKYVQWSLPFIV 466 The following BLAST results are available for this feature:
BLAST of TCONS_00028759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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