TCONS_00028787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028787
Unique NameTCONS_00028787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028787 ID=TCONS_00028787|Name=TCONS_00028787|organism=Clytia hemisphaerica|type=transcript|length=292bp
GAATGGTTTAATTCTGCCTCgtagcgaaacggaaccgttacGTGTGACCA
TAGTCTTAATAATGCTAATTCGTTCGATCTTTAGTTGAAGCGGGTGAAGT
TCCAGATCTCCGTGGAGTACGTTTAGATTGGATGCGACTTCAGGCTTATA
CAAGTATCAGAGGATCAGTACCGGAGCTGAAAGAGAATCGGGAATTAGCA
GTGTTGATGAATACAATCATTTTGCACACCAAACTTGTGGATGAACAAGA
AGAAGTCGTCAATGATGTCGCAGATCTTTCCATTTTATGGTA
Run BLAST on NCBI

transcript from alignment at sc0000704:101207..101955+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028787 ID=TCONS_00028787|Name=TCONS_00028787|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at sc0000704:101207..101955+ (Clytia hemisphaerica)
GAATGGTTTAATTCTGCCTCgtagcgaaacggaaccgttacGTGTGACCA
TAGTCTTAATAATGCTAATTCGTTCGATCTTTAGTTGAAGCGGGTGAAGT
TCCAGATCTCCGTGGAGTACGTTTAGATTGGATGCGACTTCAGGTAAGGA
AAGGAGAACAATGGTGGTACACTactgaaaaattcaatttagtttttttt
ttacactgTAAGTTGTGGGCGTGGTTGAGTGGTAACGTTCTTGCCTGCTG
ACCGCAAGGTTGGGGGTTCGAGCCCCGTGCAAATCGACCACGTAGCTAAG
TCACAGGGGAACAAACTCTTAGAATGGATTTGATTTCAGATACTAAACAT
AACAATGATTTAATATGTTATATGATTTTTTATAAGCGTACTAAAATTCG
AAAACAGGCTTGGGGATGCTTAGGTAAAAACTTGAGGGCTTGACAAGGCT
GAAAAAGGATGCAAAATTTAAAGACAATTCCAAAAAATCCGTAAAATCCA
AGCCAAAAtgcatttttcgtaggctcaggTAAAGCTTGATAAGTGCAGtg
cttgtaaaaaaaacattttaagataaCCAATTTGCTTTTTGTTTTTCCAG
GCTTATACAAGTATCAGAGGATCAGTACCGGAGCTGAAAGAGAATCGGGA
ATTAGCAGTGTTGATGAATACAATCATTTTGCACACCAAACTTGTGGATG
AACAAGAAGAAGTCGTCAATGATGTCGCAGATCTTTCCATTTTATGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016328XLOC_016328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028787-exon-sc0000704-1491911889:101207..101349TCONS_00028787-exon-sc0000704-1491911889:101207..101349Clytia hemisphaericaexon
TCONS_00028787-exon-sc0000704-1510915933:101207..101349TCONS_00028787-exon-sc0000704-1510915933:101207..101349Clytia hemisphaericaexon
TCONS_00028787-exon-sc0000704-1575043694:101207..101349TCONS_00028787-exon-sc0000704-1575043694:101207..101349Clytia hemisphaericaexon
TCONS_00028787-exon-sc0000704-1491911889:101807..101955TCONS_00028787-exon-sc0000704-1491911889:101807..101955Clytia hemisphaericaexon
TCONS_00028787-exon-sc0000704-1510915933:101807..101955TCONS_00028787-exon-sc0000704-1510915933:101807..101955Clytia hemisphaericaexon
TCONS_00028787-exon-sc0000704-1575043694:101807..101955TCONS_00028787-exon-sc0000704-1575043694:101807..101955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000704supercontigsc0000704:101207..101955 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.3019	19.1109	6.27098	8.02292	99.3949	81.2672	102.427	107.173	45.5948	53.8084	45.7532	33.765	45.0518	45.3155	28.3045	38.9424	55.01	43.271	44.836	48.8133	42.4276	45.2068	22.4704	32.4197	80.9631	79.6059	25.1199	16.2099	29.3179	27.9432
Blast
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BLAST of TCONS_00028787 vs. Swiss-Prot (Human)
Match: NCKP1 (Nck-associated protein 1 OS=Homo sapiens GN=NCKAP1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.253e-17
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:   84 VEAGEVPDLRGVRLDWMRLQAYTSIRGSVPELKENRELAVLMNTIILHTKLVDEQEEVVNDVADLSIL 287
            VE GEV D RG+RLDW RLQAYTS+  +   L ++REL  +MNTII HTK+VD   E++ + +DLSI 
Sbjct:  475 VEDGEVFDFRGMRLDWFRLQAYTSVSKASLGLADHRELGKMMNTIIFHTKMVDSLVEMLVETSDLSIF 542
The following BLAST results are available for this feature:
BLAST of TCONS_00028787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKP12.253e-1755.88Nck-associated protein 1 OS=Homo sapiens GN=NCKAP1... [more]
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