TCONS_00028802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028802
Unique NameTCONS_00028802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028802 ID=TCONS_00028802|Name=TCONS_00028802|organism=Clytia hemisphaerica|type=transcript|length=1334bp
cagacatttcaatagaaacaaaagattctacaaCTTAGGTTTCAATAAat
gaatagcgcatttcttatcctcttttccaaAATCTCTGGAGCAACATTAG
CTCTAATCCAacctcaaaaataaaaaaaaagatctgGGAACTATATGGCT
TTTGAGTTTCCTTTTAACTCCGAAACGTATGCAATCGACGACACAAACGA
AAGAGATAGAGAAGAGAGCACAAAAGACTGAAGAAATCTACGAAACCATC
AACAAAATTAGCGACTACTTTCCGAGAAGTCAAACAtgaagaaaataata
tttttcattcaaattttggtGGTACTTGGCTCAACCAGTTCGATCAGCGA
ATTTGGAAATGAAGAAGCAGTTTTAGACGCGAAAAGCAGTCAAAAAAAAA
CCCTCGCTGAATCGGATTCTTCCACTTGTCAGCCTTGTCGAAAGGGTCGA
GACGGTCGTGATGGCTTGAACGGACTACCCGGACGAGATGGGGAAGATGG
ATGCCCGGGACTAGCCGGCAGAGACGGACTACCTGGCGCGACGGGGCCAG
AAGGTCCCCAAGGTATTCAAGGCCGTCCGGGGTCAAATGGAACCAAGGGA
GACCAAGGTGTTCCAGGAAAAGATGGAAAAAATGGTATCAATGGAGCTCC
TGGGGTAAATGGAAAACCAGGCCTTCCAGGCCCTCCTGGAAAAGATGGTT
CAATTGGTGGCAGAAACTTTAAACAATGTGCCTGGGATTTTACATCATCT
AAAGATTCTGGCTTGCTTAAGGCTTGCAttttcacaaaatcaaaaacCGA
CTCATACTTAATGGTGACAATCTCTTCAAATGTATATCAAGGAAAGGCTA
GAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAAGAATGTTCTCCT
CACCCAATAGACCATGTGTTTTACAGGGGCTACAAGGGGCAATCTGAGTA
TATCCCCTTCACAATGAATGGTGTTTGCAAAATCAACAAATCAGGCATTG
TGAGTGTTGGATTCAACGTTGGGAAATGTAAAGCTATTACGAACATTGGT
GATGCGTACACAGGATTCAGATCAGTGACACGCATTGTCATCGAAGAGCT
CTaaacacaaattattttttcttatttggtgcGCCTtaaaagagagcaat
taatcgttaattgcatcctgtaaaaagcaattaatcgttaatcacttTCT
TCGATGCCGCACCAATGAttacaaaattaattttaatgttttttatatac
atttttttcatcgaacgctttattaattgcattcgaaattcattttgtga
gaaagaaaatctataaacagCAATAGAAAAAGTA
Run BLAST on NCBI

protein sequence of TCONS_00028802-protein

>TCONS_00028802-protein ID=TCONS_00028802-protein|Name=TCONS_00028802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MKKIIFFIQILVVLGSTSSISEFGNEEAVLDAKSSQKKTLAESDSSTCQP
CRKGRDGRDGLNGLPGRDGEDGCPGLAGRDGLPGATGPEGPQGIQGRPGS
NGTKGDQGVPGKDGKNGINGAPGVNGKPGLPGPPGKDGSIGGRNFKQCAW
DFTSSKDSGLLKACIFTKSKTDSYLMVTISSNVYQGKARACSRWFVTFDG
KECSPHPIDHVFYRGYKGQSEYIPFTMNGVCKINKSGIVSVGFNVGKCKA
ITNIGDAYTGFRSVTRIVIEEL
Run BLAST on NCBI

transcript from alignment at sc0000704:133012..144743-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028802 ID=TCONS_00028802|Name=TCONS_00028802|organism=Clytia hemisphaerica|type=transcript|length=11732bp|location=Sequence derived from alignment at sc0000704:133012..144743- (Clytia hemisphaerica)
CAGACATTTCAATAGAAACAAAAGATTCTACAACTTAGGTTTCAATAAAT
GAATAGCGCATTTCTTATCCTCTTTTCCAAAATCTCTGGAGCAACATTAG
CTCTAATCCAACCTCAAAAATAAAAAAAAAGATCTGGGAACTATATGGCT
TTTGAGTTTCCTTTTAACTCCGAAACGTATGCAATCGACGACACAAACGA
AAGAGATAGAGAAGAGAGCACAAAAGACTGAAGAAATCTACGAAACCATC
AACAAAATTAGCGACTACTTTCCGAGAAGTCAAACATGAAGAAAATAATA
TTTTTCATTCAAATTTTGGTGGTACTTGGCTCAACCAGTTCGATCAGCGA
ATTTGGAAATGAAGAAGCAGTTTTAGACGCGAAAAGCAGTCAAAAAGTAA
GTTCTTTGAATTTTACTATTTTCACTTAACTCTTTACCATATTCAACCTA
AGCTTTTAGGGGCGGTTCAGAACTGGGGGAGGGGGCTTTTCCTGCACCAC
CCCTTAACTTTTGATCTCGTGGATCTTTTTGGATGAAATTTAGCACATAA
GATCCTTGTCTCATAAGGTAACTTTTGACAAAAGATTTTTTTGATGACGT
CACTCATCATGCCAAATGTGAGCAAAAACCGAAAATTTCCTTTGTTTTTA
TAAATAGCTATTGTATTCTAACAAAGGCATTAGAAAAAAGTTGCCTGAGT
TTAAAATGCTTATTTTATCCTAAATATTCAATAAAATACGGTTTAAACGA
TATATTTGACATTGAAAATAAATTTGTATTGGAAAAGTGTCAATTTTTGT
GAGACCTTACTGTCAGAAATGTCATCATGCTCAAGGTGTGAAAATATTTA
GTTGTCAAATTTTTTTTTATTTTGAAGCTAAATAAAAGTTAGGAATTTAC
AGAAAATTTCACGGCAAAAGCTCTATTATTTCAGGAGCTATTACTAATAG
TTTGACCTCCGAACAAGAAGAGCCCCCCCCCCATAGGCCGAATAGGGTTA
ACTGTTACCCTGGGTATCAGAGGTTGAGTTTCCAAAGAACTTCAAAGTAC
CACCAAAGAGATTTTTATTGGGTCTAGGAGCTTTATGCTACAACACTAAA
AGCACATATCAATCTTTCCTAACAATATCCTATTCTTTTTCATTAGAAAA
CCCTCGCTGAATCGGATTCTTCCACTTGTCAGCCTTGTCGAAAGGGTCGA
GACGGTCGTGATGGCTTGAACGGACTACCCGGACGAGATGGGGAAGATGG
ATGCCCGGGACTAGCCGGCAGAGACGGACTACCTGGCGNTAGGCCGAATA
GGGTTAACTGTTACCCTGGGTATCAGAGGTTGAGTTTCCAAAGAACTTCA
AAGTACCACCAAAGAGATTTTTATTGGGTCTAGGAGCTTTATGCTACAAC
ACTAAAAGCACATATCAATCTTTCCTAACAATATCCTATTCTTTTTCATT
AGAAAACCCTCGCTGAATCGGATTCTTCCACTTGTCAGCCTTGTCGAAAG
GGTCGAGACGGTCGTGATGGCTTGAACGGACTACCCGGACGAGATGGGGA
AGATGGATGCCCGGGACTAGCCGGCAGAGACGGACTACCTGGCGCGACGG
GGCCAGAAGGTCCCCAAGGTATTCAAGGCCGTCCGGGGTCAAATGGAACC
AAGGGAGACCAAGGTGTTCCAGGAAAAGGTAAATGTGAAAGATTCGTATT
CTATTGGCCTTAGTATTAGGTGGTAATCGTTAAAAAAATGAAAGGAGAAC
AAAGCTAAAAGAAGAACTAAATTTAAACTTTAAATTTGCGTCAGTCTATT
TCTGTATTAATTTAATTTTTTTTCCTAGAGGAGGGGGAGAGGGTTATCAG
AAAAGAGTTCGCACACAGAAGGAGGGAGGTACTGTCAAAGCGTACGCAAG
CGTTTAAGGGGGAGTGGGGTCGAATTTTACTTACTTTTGAGCGTTACGTA
CTTTTTGACCAGCCCCTTTTTGAGTTTTAGAAACCTAATTGATTGATTAG
TAGGTTCTATGAAGGATCTTTAAATTTAACTAAATGTGAATCAAAAATTT
GAATGGCTAAAGCCTATTAAATTCATTGTATTTCTGAACCCAGTTTTCCG
AATTTGGGGTAATTCTAGTCCGACACGCCAGTTGGGATAGAAACGGTATC
ACGCGGGAAAAGTGAGCGTCGGAGTTAGGTAAGCATAGAAAGATATTGTC
GGCGGCAAGGGCTGAAAGTTGATGTTAATCAGCAGCCTCTCACCAACTTT
TGCTCGTTCTCCTACGCAGCTCTTATTCCAGCAAACGCCTGCCGCCTTTA
TGTTCCCACCCTGTGACACCCTGTGGCATGATTAATCAACTAGTTTGCTA
GTTTAGGGTAAATCTCGAACGGGAATTTTATACACGTTATCATATCATAT
CAGAGGATATCTTTTTGACTTATCGACCGCCGGAGGCGGTTTCTTTCATA
GTGGTACGCTCATCTCGTTTTGCCTTGGCTCATTACTTTTTCCGAGCTGA
TTTATATATTCGGAATTGAATAATCGAGACATGAAAAATGACTATATTGT
AATCTGTTTTCAATGAATAAACTAAAATGTACTGGAGATGACATGTAGGG
CGTTTAATAATGTGCGCGCGCTCTTTCGCGAGCGTGATGCGTGATGGGAG
GCGGTTGTTTCAGTGTGGTTTAGATCCACACTGTGACCTAGTTCGTACTA
CTCTTTGTATAACATATACTAGGTCACAGTGTGGATCTAAACCACACTGA
AACGCCCGCCTTCCTTCACGCATCACGCACGCTCGCGAAAGAGTGCGCGC
ACATTGTTAACGCCTACATGTCATCTCCAGTACATTTTAGATTATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGTCATTTTTCACGTCTCGATTATTCAATTACGAATAAAAGACAT
TCAGGGAAAAAAAAGAGAAACACCTGGGTAATCTAGTTAAAAAAACGAAA
GTAAATGGTAGACAAAGTAATGAGCCAAGGCAAAACGAGATTAGCGTACC
ACTATGAAAAAAACCGCCTCCGGCGGTCGATAACATTCCGTTATACGAAA
AGTAATCCAAATTAATTTCTTTATTAGATGGAAAAAATGGTATCAATGGA
GCTCCTGGGGTAAATGGAAAACCAGGCCTTCCAGGCCCTCCTGGAAAAGG
TTTGTAAAGATTTCCTTTATTTTTCTGTTACATGCATAGCATTTATAGGC
AAAAAACAGTTCTTGATCAAGCATCAAAACCCTTAGATCTTAGATTTTCA
TCGAATAAGGGAGCTTATCGAATAAGGGAGCGTCGTTTATGAGAGTTTCT
AGTTGATGGGGTTTTTAAATTTCATCGAATAAGGGAGCCTATCGAATAGT
AGAACGTTAGACCATGGCCAGGTACCTCAAAACGTTTCACTTTTTTTCAA
AATGTCGGTGAATAAACTTTTGATATCTTTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTCAATTTGAAGGTGCTGATTCGGAAT
TTGAATGTTACCAAGCTTGAAAACCCGCAGTTTTTACGTAATTTGCGATT
TTTTGCGTTTTTAGGCAAAACTGTAAGCCCCTGAAAATTTATGATTTTGG
GGGGGGTCTTCAAAATCAAAAAAGACCTATACCACGTGATAGAGCTCTTC
AAACTGAGCAGAAAAATGTATTATATCTAAGTCTCAACTTTTCTTAATCA
AAAGTTATGGGCGTTTTTGTGGTAAAAAAATGCTATAATTTTGCATAAAT
TATGCAAATTGTGGGGAAATTCCCTGTTTTCAATCAATTTTTGACCATAA
AATCGTCTATAACTTTTTATCTAAAAAAGTTGAGACTTTGATATAATACA
TTTTTTTGCTCAGTTTGAAGAGCTCTATCACGTGGTATAGGTCTTTTTTG
ATTTTGAAGACCCCCCAAAAATCACAAATTTTCAGGGCTTACAATTTTGC
CTAGAAACGCAAAAAATCGCAAATTACGCAAAAACTGCGGGTTTTCAAGC
TTGGTAACATTCAAATTCCGAATCAGCACCCTCAAATTGACCAAGGAAGA
TATCAAAAGTTTATTCACCGACATTTTGAAATTTTTATTTATTTTTGAAA
CAATAACAATCCACTGGCCACGGCCTACGTCAAATTAGAGAGCGTCAACT
CGTCAACTGAATGTATATTGCAGTGCCGTAGCAACTGGGGGGCAAGCCCC
CCCCAATAATTTTTTCAAAAATAGTTATTTTGCAAAATGCAAAGTTTTTC
TTTTTTAATTTGTCATAATTGTCTTTTAAGTGCATGTTATGAGTGCATTT
TCAAGCAATCTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTCTTTT
ACCTATAACTTTTGAAGGAATTCTTCAATCTTCATAAATTTGGTATCGTT
GGAGAGATATTTGTGAGTGGAACAATTTAAAATCAAAAAGTCTTTTAAAA
AATTCTAAAAATGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGT
AGAAAAGTGCTATAACCATCATTTTCACTTAAATGAATCCTTGATCATCG
AACGTCATCACTGTGAAAAAAATTCTAAAAAATAATAATTCAGTCAAAAG
ATATCAAACAAAGTTATGAGCTGATTAACGTCTAAAAACCCTGTTTTCTG
CTGTTTTCCGCTGTTTTTTGGGGTCAATCACTTATTAACTTTGTATCATA
ACTTTATATTGAATAAATATTTCAGTGAAATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATATCTCTCCAACAATACCAAATTTATGAAGATTGAAGAATTC
CTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAACA
GACTTTAGAGCTCAAATTTTCAAAATTTCCCCCCTGGTTGGCCCTCGCGG
TGTCACTAAACTTCAGCCCCCCCAATATGAAAATGCTTTCTACGGCACTG
TAGTAGAAAAGTAAACTAGACGATGAAATCGACACCATTGGAACGATAAT
AAACGCAGGGAAATATGCATGCGTGCAGTTAACATCCATTACGGTAGTTT
ACGGAAAAATCGGCTGTAGAGTTTAGCCCTGGTGTAGATGATAGGACTGT
CTAAGTTTAAGGGCTCTGACCATAGTCGGAAAATTGATTTTAGTATTTGA
ACATAAAAGTTATGTTTTAGGTTCTTTTAAACACTTTTAACAAAGAATTG
CCTTTATAAATTGCTTTTTAATCAAATCCCTTCAGAGTAATTAAGAATTT
AATTGCAGAAATGACGCTATGAACNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTCTTCAATAGCAAATCGCAGTGGTGAAAAACTCAAACCCATGCATC
AATCGCAATCGCAATTAATAACCACAAGAACTGGATTTTGTCCATAATTT
GTTGAAAAATGCTTTGGTCTTACTTAATCAAATTCCAGTAACACTTTATC
ATATAATAAATGATCCAAAAGTTCATCAAATCATCCATCGTCTTCAATAT
CAAATCGCAGTTTGGTGAATAACTCCAAGGCGACAATCAAAAATATGTTC
CGTTCTTGGCAGACAAAAATTCCTAGTCAGACGAGTCAGAAAATTGTCTG
AATTTTTCATCAAGCGAACGAATAAATACTTTGAAACCATTTTCCAAAAA
ACCTGACAGTTACATCAATATGCCTTCTTACCTGTCTTTAAAAATATAAA
TAAAAGTAATCACGGAAAAGGACGCGAAAAAAAAAGACATAAGTGTGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NTAAGTTTTAATGGGTAATTAACCTTTTTGTTTCAAAATTTCTTTACACT
GTCTGCAAAGAATTGAACTATTTTAAATTTTGCGGAAAATTTTTCTAAAA
AGACGTGTCAAAAGTTATGACTGTTTTTTTTAAGCAAAATCCAGATGAAA
AATTGATGAAAAGCCACTATTTTGAAGATTTCGAGACAAAGAAGCATTTA
CAAAAATTTTCCGCAAAATTTTTTATTGTTCAGTAAAAGATACACCATCT
ACTGCCAAAAATTTTTCAAAATGTTTTTTCGTCGCCGAAACTAAGCTCTT
CAAAGTTGAAATACTCTTCCTCGCAAAAGTCTTCATTTTCTTCTTCATCA
AATTTTTTCATTGCAATTTTTGAATTTTCAGATTCAGGAATAGTTTGTCT
AACAGAAAATGTATACCATGCTATAGTTTTGTTGGTTACATCAGTCAGAA
AACACATTTTAAACACGGCAATTATGAAAAATTCACTAAACTTTCGCAAA
TCGTTGTACACATAAAAATGAAATATTAACATCAGCATAAAAGTGACAAA
CTTATAATAAGAAGCCCCCAGCGGTTGGTTTCCAGGAGCAGCCACCGGCT
AGGAAGTATGAAATATCTGTTCTTGAGGTCCATTTCTCCTGGAAAAAACT
ATCTGTTCTGTATCCTGGGCTTTCCTGGATTATATCATCTGTTCTGGGAA
AAAAATAAGACTCCTCGAAAATGTATATCTGTTCTCTAGAAATATTGTGT
TCCTAGAAAAATATGACAGCTATTCTCTAAAAAAGTTAAAATGCTTTTAG
AAAATGAGACCTTTTAAGAAAATTATGAAGCTCCCTGGAAAAAAATCTGG
CATCTGTCTGTGTTTTTCACAGTTTAGCTCCTGGATTTTTTGAACAGATT
GTCCGCTAGAAAAATTATATGTCTTTTTCCTTAAAATGTGCTCCTGGATT
TCAAGAACAGATGTTTTTAAGGCGACCCCTGGATTTTACCTGGGTGTTTT
GAGGAAAGACTCTCCTAGATTTATCCATAAAATTTACTCTTCTGGAAAAA
AAGAACAGATATTTCAAAAAAGTCCGCCGGCGGCTGCTCTTGGGTTTCGT
GGTCCGTTATGACATGAATTTTTGAAACATATGACGCAATGGCGTGAAAT
TAAAAAGCGGCGTGGTCGTGTAATAGAGATCTTTAAGGTGTGAATTCTGA
GGCCAATAGCTGTTTCTAATTTTGTGATTTCAGATGGTTCAATTGGTGGC
AGAAACTTTAAACAATGTGCCTGGGATTTTACATCATCTAAAGATTCTGG
CTTGCTTAAGGTATGGCTTTTTTCAATACGTTAAAAACTTTCAAGTATTG
ACAGTAACCATAGCAGAGCATTTAGTGCAATATCACCTTATTGCGAATCC
TCTGAAAATACCCAGCTTTGGGGCGTACCAGTTTGTTGGTACGTGTCGGT
ATTCACCTTTTTTGTGTCGGTATTTTGGTTTTTGAGATGATTTTCGGTGA
TGGAGAATGTGAAATTTTCACTGATACGTTAATTTTGCTTAAACGTCGGA
GAAACGGTGCTAAATAAAGGACTATTTCTAAGAAATTCGTCTTATTCTCT
TATCGCATATTAGAACTAAAAAAAATATGAAAATATGTCGGTGTCAGTAT
TTCGTAAAAAGATGTGCCGGTATTGCGGTGATTTATTTTGATAAATTTCT
TTGAAAACAACAAGAACGACAAAAAAAGCAAAATTTGAAAGCAAAACTAA
AGAAAATTTTTACCGTGGTAGAATAGTCATGGTAAAGCAGGCATTATTCA
ATGGCTGTTTTTGCCTACAGGTTTATAATAATTACTTATAACTTCTTTTT
CAATCTTTTAAATGAACAGGCTTGCATTTTCACAAAATCAAAAACCGACT
CATACTTAATGGTGACAATCTCTTCAAATGTATATCAAGGAAAGGCTAGA
GCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAAGAATGTTCTCCTCA
CCCAATAGACCATGTGTTTTACAGGGGCTACAAGGGGCAATCTGAGTATA
TCCCCTTCACAATGAATGGTGTTTGCAAAATCAACAAATCAGGCATTGTG
AGTGTTGGATTCAACGTTGGGAAATGTAAAGCTATTACGAACATTGGTGA
TGCGTACACAGGATTCAGATCAGTGACACGCATTGTCATCGAAGAGCTCT
AAACACAAATTATTTTTTCTTATTTGGTGCGCCTTAAAAGAGAGCAATTA
ATCGTTAATTGCATCCTGTAAAAAGCAATTAATCGTTAATCACTTTCTTC
GATGCCGCACCAATGATTACAAAATTAATTTTAATGTTTTTTATATACAT
TTTTTTCATCGAACGCTTTATTAATTGCATTCGAAATTCATTTTGTGAGA
AAGAAAATCTATAAACAGCAATAGAAAAAGTA

Coding sequence (CDS) from alignment at sc0000704:133012..144743-

>TCONS_00028802 ID=TCONS_00028802|Name=TCONS_00028802|organism=Clytia hemisphaerica|type=CDS|length=4095bp|location=Sequence derived from alignment at sc0000704:133012..144743- (Clytia hemisphaerica)
GCTTGCATTTTCACAAAATCAAAAACCGACTCATACTTAATGGTGACAAT
CTCTTCAAATGTATATCAAGGAAAGGCTAGAGCATGCAGTCGATGGTTTG
TCACCTTTGATGGAAAAGAATGTTCTCCTCACCCAATAGACCATGTGTTT
TACAGGGGCTACAAGGGGCAATCTGAGTATATCCCCTTCACAATGAATGG
TGTTTGCAAAATCAACAAATCAGGCATTGTGAGTGTTGGATTCAACGTTG
GGAAATGTAAAGCTATTACGAACATTGGTGATGCGTACACAGGATTCAGA
TCAGTGACACGCATTGTCATCGAAGAGCTCTAAATGGTTCAATTGGTGGC
AGAAACTTTAAACAATGTGCCTGGGATTTTACATCATCTAAAGATTCTGG
CTTGCTTAAGATGGAAAAAATGGTATCAATGGAGCTCCTGGGGTAAATGG
AAAACCAGGCCTTCCAGGCCCTCCTGGAAAAGAAAACCCTCGCTGAATCG
GATTCTTCCACTTGTCAGCCTTGTCGAAAGGGTCGAGACGGTCGTGATGG
CTTGAACGGACTACCCGGACGAGATGGGGAAGATGGATGCCCGGGACTAG
CCGGCAGAGACGGACTACCTGGCGCGACGGGGCCAGAAGGTCCCCAAGGT
ATTCAAGGCCGTCCGGGGTCAAATGGAACCAAGGGAGACCAAGGTGTTCC
AGGAAAAGATGAAGAAAATAATATTTTTCATTCAAATTTTGGTGGTACTT
GGCTCAACCAGTTCGATCAGCGAATTTGGAAATGAAGAAGCAGTTTTAGA
CGCGAAAAGCAGTCAAAAAGCTTGCATTTTCACAAAATCAAAAACCGACT
CATACTTAATGGTGACAATCTCTTCAAATGTATATCAAGGAAAGGCTAGA
GCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAAGAATGTTCTCCTCA
CCCAATAGACCATGTGTTTTACAGGGGCTACAAGGGGCAATCTGAGTATA
TCCCCTTCACAATGAATGGTGTTTGCAAAATCAACAAATCAGGCATTGTG
AGTGTTGGATTCAACGTTGGGAAATGTAAAGCTATTACGAACATTGGTGA
TGCGTACACAGGATTCAGATCAGTGACACGCATTGTCATCGAAGAGCTCT
AAATGGTTCAATTGGTGGCAGAAACTTTAAACAATGTGCCTGGGATTTTA
CATCATCTAAAGATTCTGGCTTGCTTAAGATGGAAAAAATGGTATCAATG
GAGCTCCTGGGGTAAATGGAAAACCAGGCCTTCCAGGCCCTCCTGGAAAA
GAAAACCCTCGCTGAATCGGATTCTTCCACTTGTCAGCCTTGTCGAAAGG
GTCGAGACGGTCGTGATGGCTTGAACGGACTACCCGGACGAGATGGGGAA
GATGGATGCCCGGGACTAGCCGGCAGAGACGGACTACCTGGCGCGACGGG
GCCAGAAGGTCCCCAAGGTATTCAAGGCCGTCCGGGGTCAAATGGAACCA
AGGGAGACCAAGGTGTTCCAGGAAAAGATGAAGAAAATAATATTTTTCAT
TCAAATTTTGGTGGTACTTGGCTCAACCAGTTCGATCAGCGAATTTGGAA
ATGAAGAAGCAGTTTTAGACGCGAAAAGCAGTCAAAAAGCTTGCATTTTC
ACAAAATCAAAAACCGACTCATACTTAATGGTGACAATCTCTTCAAATGT
ATATCAAGGAAAGGCTAGAGCATGCAGTCGATGGTTTGTCACCTTTGATG
GAAAAGAATGTTCTCCTCACCCAATAGACCATGTGTTTTACAGGGGCTAC
AAGGGGCAATCTGAGTATATCCCCTTCACAATGAATGGTGTTTGCAAAAT
CAACAAATCAGGCATTGTGAGTGTTGGATTCAACGTTGGGAAATGTAAAG
CTATTACGAACATTGGTGATGCGTACACAGGATTCAGATCAGTGACACGC
ATTGTCATCGAAGAGCTCTAAATGGTTCAATTGGTGGCAGAAACTTTAAA
CAATGTGCCTGGGATTTTACATCATCTAAAGATTCTGGCTTGCTTAAGAT
GGAAAAAATGGTATCAATGGAGCTCCTGGGGTAAATGGAAAACCAGGCCT
TCCAGGCCCTCCTGGAAAAGAAAACCCTCGCTGAATCGGATTCTTCCACT
TGTCAGCCTTGTCGAAAGGGTCGAGACGGTCGTGATGGCTTGAACGGACT
ACCCGGACGAGATGGGGAAGATGGATGCCCGGGACTAGCCGGCAGAGACG
GACTACCTGGCGCGACGGGGCCAGAAGGTCCCCAAGGTATTCAAGGCCGT
CCGGGGTCAAATGGAACCAAGGGAGACCAAGGTGTTCCAGGAAAAGATGA
AGAAAATAATATTTTTCATTCAAATTTTGGTGGTACTTGGCTCAACCAGT
TCGATCAGCGAATTTGGAAATGAAGAAGCAGTTTTAGACGCGAAAAGCAG
TCAAAAAGCTTGCATTTTCACAAAATCAAAAACCGACTCATACTTAATGG
TGACAATCTCTTCAAATGTATATCAAGGAAAGGCTAGAGCATGCAGTCGA
TGGTTTGTCACCTTTGATGGAAAAGAATGTTCTCCTCACCCAATAGACCA
TGTGTTTTACAGGGGCTACAAGGGGCAATCTGAGTATATCCCCTTCACAA
TGAATGGTGTTTGCAAAATCAACAAATCAGGCATTGTGAGTGTTGGATTC
AACGTTGGGAAATGTAAAGCTATTACGAACATTGGTGATGCGTACACAGG
ATTCAGATCAGTGACACGCATTGTCATCGAAGAGCTCTAAATGGTTCAAT
TGGTGGCAGAAACTTTAAACAATGTGCCTGGGATTTTACATCATCTAAAG
ATTCTGGCTTGCTTAAGATGGAAAAAATGGTATCAATGGAGCTCCTGGGG
TAAATGGAAAACCAGGCCTTCCAGGCCCTCCTGGAAAAGAAAACCCTCGC
TGAATCGGATTCTTCCACTTGTCAGCCTTGTCGAAAGGGTCGAGACGGTC
GTGATGGCTTGAACGGACTACCCGGACGAGATGGGGAAGATGGATGCCCG
GGACTAGCCGGCAGAGACGGACTACCTGGCGCGACGGGGCCAGAAGGTCC
CCAAGGTATTCAAGGCCGTCCGGGGTCAAATGGAACCAAGGGAGACCAAG
GTGTTCCAGGAAAAGATGAAGAAAATAATATTTTTCATTCAAATTTTGGT
GGTACTTGGCTCAACCAGTTCGATCAGCGAATTTGGAAATGAAGAAGCAG
TTTTAGACGCGAAAAGCAGTCAAAAAGCTTGCATTTTCACAAAATCAAAA
ACCGACTCATACTTAATGGTGACAATCTCTTCAAATGTATATCAAGGAAA
GGCTAGAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAAGAATGTT
CTCCTCACCCAATAGACCATGTGTTTTACAGGGGCTACAAGGGGCAATCT
GAGTATATCCCCTTCACAATGAATGGTGTTTGCAAAATCAACAAATCAGG
CATTGTGAGTGTTGGATTCAACGTTGGGAAATGTAAAGCTATTACGAACA
TTGGTGATGCGTACACAGGATTCAGATCAGTGACACGCATTGTCATCGAA
GAGCTCTAAATGGTTCAATTGGTGGCAGAAACTTTAAACAATGTGCCTGG
GATTTTACATCATCTAAAGATTCTGGCTTGCTTAAGATGGAAAAAATGGT
ATCAATGGAGCTCCTGGGGTAAATGGAAAACCAGGCCTTCCAGGCCCTCC
TGGAAAAGAAAACCCTCGCTGAATCGGATTCTTCCACTTGTCAGCCTTGT
CGAAAGGGTCGAGACGGTCGTGATGGCTTGAACGGACTACCCGGACGAGA
TGGGGAAGATGGATGCCCGGGACTAGCCGGCAGAGACGGACTACCTGGCG
CGACGGGGCCAGAAGGTCCCCAAGGTATTCAAGGCCGTCCGGGGTCAAAT
GGAACCAAGGGAGACCAAGGTGTTCCAGGAAAAGATGAAGAAAATAATAT
TTTTCATTCAAATTTTGGTGGTACTTGGCTCAACCAGTTCGATCAGCGAA
TTTGGAAATGAAGAAGCAGTTTTAGACGCGAAAAGCAGTCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016334XLOC_016334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028802-exon-sc0000704-1575043694:144348..144743TCONS_00028802-exon-sc0000704-1575043694:144348..144743Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1575043694:143066..143291TCONS_00028802-exon-sc0000704-1575043694:143066..143291Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1575043694:141495..141566TCONS_00028802-exon-sc0000704-1575043694:141495..141566Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1575043694:134134..134210TCONS_00028802-exon-sc0000704-1575043694:134134..134210Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1575043694:133012..133574TCONS_00028802-exon-sc0000704-1575043694:133012..133574Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1510915933:144348..144743TCONS_00028802-exon-sc0000704-1510915933:144348..144743Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1510915933:143066..143291TCONS_00028802-exon-sc0000704-1510915933:143066..143291Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1510915933:141495..141566TCONS_00028802-exon-sc0000704-1510915933:141495..141566Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1510915933:134134..134210TCONS_00028802-exon-sc0000704-1510915933:134134..134210Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1510915933:133012..133574TCONS_00028802-exon-sc0000704-1510915933:133012..133574Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1491911889:144348..144743TCONS_00028802-exon-sc0000704-1491911889:144348..144743Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1491911889:143066..143291TCONS_00028802-exon-sc0000704-1491911889:143066..143291Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1491911889:141495..141566TCONS_00028802-exon-sc0000704-1491911889:141495..141566Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1491911889:134134..134210TCONS_00028802-exon-sc0000704-1491911889:134134..134210Clytia hemisphaericaexon
TCONS_00028802-exon-sc0000704-1491911889:133012..133574TCONS_00028802-exon-sc0000704-1491911889:133012..133574Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028802-proteinTCONS_00028802-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000704supercontigsc0000704:133012..144743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0307523	0	0	0.377146	0.302454	8.17506	8.95785	173.988	59.4273	168.419	258.338	19.911	11.9532	116.081	84.2374	1.25165	1.00145	1.01748	1.09904	1.06296	0.868961	0.423745	0.254281	0.471846	0.191414	0.0432418	0.119025	0.0448547	0.0453875
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
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BLAST of TCONS_00028802 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.354e-24
Identity = 69/196 (35.20%), Postives = 99/196 (50.51%), Query Frame = 1 
Query:  550 EGPQGIQGR---PGSNGTKGDQGVPGKDGKNGINGAXXXXXXXXXXXXXXKDGSIGGRNFKQCAW-DFTSSKDSGLLKACIFTKSKTDSYLMVTISSNV-YQGKARACSRWFVTFDGKECS-PHPIDHVFY--RGYKGQSEYIPF----TMNGVCKINKSGIVSVGFNVGKCKAITNIGDAYTGFRSVTRIVIEEL 1101
            +GP G+ GR   PG+NG  G  G+PG+DG  G  G            P          N+KQC+W       D G +  C FTK +++S L V  S ++  + +   C RW+ TF+G ECS P PI+ + Y  +G    +  I      ++ G+C+   +G+V V   VG C      GDA TG+ SV+RI+IEEL
Sbjct:   57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTP----------NYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPK-GDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00028802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR18.354e-2435.20Collagen triple helix repeat-containing protein 1 ... [more]
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