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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028819 ID=TCONS_00028819|Name=TCONS_00028819|organism=Clytia hemisphaerica|type=transcript|length=1770bp
tgggaacttgtttttgatcgatattgaagtattttgcaaatattgcagaa
gtctacaaaccttttgtccagcattgtgaCTTGTTGGGTTTTACCTaaca
aaatcatcatcatcgaTAATTTATCATTCTACTTTGTATTAcagtttaaa
aaacaaaattaaacacAGCAAACAAGAATGTCTTGGAGCTACCATCAACG
TCAAAACTTGGTGCCCATATCCTCGATTGAAAATACTTCATCAAAAAGTG
ATTACGAAATCGATGATTTGTTTGGTAAAGGAGATTGCATTGGAAAAGGT
TTTGATAGCAGTGGAAGATATTTCAGTTATATGTACGCTTCAAATGGTAT
CATCTCACCTCCAAGCACTCTGCACCCTGTTGATGTAACGCTACCTGTAC
ATTATTTTAACGACTCTTCTAATCAGTTTGAATGTCAGTTACTAAGACTT
CAGTTAGCATGTCCATCTACCAGGAATTGGTATCTACCTTTCTATGATGC
ATCTTCGACAAGATGGTTCCTCTTCCAAAGAAACGAtaaaatcaacaaca
acaaaactttGACCATCCATACAGGCACATTGAGAGAACTCTTTGGTCAA
TTATCAAAAAATGTTCTCACAACAACGTTTGAATGCACCATAGACAACAC
TATAGAACTTGATTATGTAGCACCTGATTTCCGAATAATTTCACCAAAAG
TTATGCAAGAACACTGTTTTCAAGATGGCTACCTCATTTTAGTTGTTCTG
GAACATTATTTTGAACATCGCTATTGTGTCGATATCATAAAGTTCGATGA
GAAAAAAGCCTCCCTTTTCAAACGTATCAGGAATATTTCTCCTAGCACTG
GATTGATGTCCATTTGGAACTGTAAGACTTTCTTAAACCTTGAATTGGAC
ATGCTACTCATTATGGACTATCCAAATAAATCTCTTTTAGCATTTGATTT
TTACGGTAACGAATATTTTATCCACAATATCGAGTTCACATTGCAAGGAT
ACGATTATTTCATGAAGTTTGGTCAACTTAAAGGATCACTCTGTTATCTG
GTGTATGGAGCTGTTGACGACGATGATAAAGAAAGTCAagtttttcaaat
cttcaacATAAATGAAACCGGTTTACAATTAAAGGATGAGATTTTCCTTG
ATAGTTTTTCtgagaaaacaaaaattgaaagattCTTTGATCAATTCTAC
ATTATTGAATTTCAACCACATCCAATATTTGGCCGATGTTTTATTGGTTT
CAACCTGATTGATATACAATCAAATGATGTGGTCATCtcttttaaatttg
ataaaCTCGACAATGTCACGTTCAATTGGGATAAACGAGAAATTGTATTG
GAGTCCAAAGAATTTGATCCTTACCACATAGAAAGGAGTTTGTTACCACG
GCATTATCTACCATCTTTTAATCGTAGTTTAAAACATCATGCTCGGTTAG
CTTGCTTACGACTTAACAATGACCAGTATCTGAAGGAGAATCTGCCTTTT
TGTCTTCAACAATATCTCGGAATTGATTCTTACTcgaagatgaaaaaaga
aagtCGTGTCTTAAAACGCAGTCATGAACAATCAAACGGCTAGCTTGAAA
AGCAAGTCGACAACAAAAGATACCATCTTACTTACTATaaagaactttct
ttcaaacagcaattttttatctttacTGTACTTCTTTTTGTTAAACGTTT
CTTAAAACTAGTGGTTCGTATACTTTTTACCTTATGTTCGCTAAAATCAT
ACAGTAAGTTTTACCATGAA Run BLAST on NCBI protein sequence of TCONS_00028819-protein >TCONS_00028819-protein ID=TCONS_00028819-protein|Name=TCONS_00028819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MSWSYHQRQNLVPISSIENTSSKSDYEIDDLFGKGDCIGKGFDSSGRYFS
YMYASNGIISPPSTLHPVDVTLPVHYFNDSSNQFECQLLRLQLACPSTRN
WYLPFYDASSTRWFLFQRNDKINNNKTLTIHTGTLRELFGQLSKNVLTTT
FECTIDNTIELDYVAPDFRIISPKVMQEHCFQDGYLILVVLEHYFEHRYC
VDIIKFDEKKASLFKRIRNISPSTGLMSIWNCKTFLNLELDMLLIMDYPN
KSLLAFDFYGNEYFIHNIEFTLQGYDYFMKFGQLKGSLCYLVYGAVDDDD
KESQVFQIFNINETGLQLKDEIFLDSFSEKTKIERFFDQFYIIEFQPHPI
FGRCFIGFNLIDIQSNDVVISFKFDKLDNVTFNWDKREIVLESKEFDPYH
IERSLLPRHYLPSFNRSLKHHARLACLRLNNDQYLKENLPFCLQQYLGID
SYSKMKKESRVLKRSHEQSNG Run BLAST on NCBI transcript from alignment at sc0000705:8099..9868 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028819 ID=TCONS_00028819|Name=TCONS_00028819|organism=Clytia hemisphaerica|type=transcript|length=1770bp|location=Sequence derived from alignment at sc0000705:8099..9868 (Clytia hemisphaerica)
TTCATGGTAAAACTTACTGTATGATTTTAGCGAACATAAGGTAAAAAGTA
TACGAACCACTAGTTTTAAGAAACGTTTAACAAAAAGAAGTACAgtaaag
ataaaaaattgctgtttgaaagaaagttctttATAGTAAGTAAGATGGTA
TCTTTTGTTGTCGACTTGCTTTTCAAGCTAGCCGTTTGATTGTTCATGAC
TGCGTTTTAAGACACGactttcttttttcatcttcgAGTAAGAATCAATT
CCGAGATATTGTTGAAGACAAAAAGGCAGATTCTCCTTCAGATACTGGTC
ATTGTTAAGTCGTAAGCAAGCTAACCGAGCATGATGTTTTAAACTACGAT
TAAAAGATGGTAGATAATGCCGTGGTAACAAACTCCTTTCTATGTGGTAA
GGATCAAATTCTTTGGACTCCAATACAATTTCTCGTTTATCCCAATTGAA
CGTGACATTGTCGAGtttatcaaatttaaaagaGATGACCACATCATTTG
ATTGTATATCAATCAGGTTGAAACCAATAAAACATCGGCCAAATATTGGA
TGTGGTTGAAATTCAATAATGTAGAATTGATCAAAGaatctttcaatttt
tgttttctcaGAAAAACTATCAAGGAAAATCTCATCCTTTAATTGTAAAC
CGGTTTCATTTATgttgaagatttgaaaaactTGACTTTCTTTATCATCG
TCGTCAACAGCTCCATACACCAGATAACAGAGTGATCCTTTAAGTTGACC
AAACTTCATGAAATAATCGTATCCTTGCAATGTGAACTCGATATTGTGGA
TAAAATATTCGTTACCGTAAAAATCAAATGCTAAAAGAGATTTATTTGGA
TAGTCCATAATGAGTAGCATGTCCAATTCAAGGTTTAAGAAAGTCTTACA
GTTCCAAATGGACATCAATCCAGTGCTAGGAGAAATATTCCTGATACGTT
TGAAAAGGGAGGCTTTTTTCTCATCGAACTTTATGATATCGACACAATAG
CGATGTTCAAAATAATGTTCCAGAACAACTAAAATGAGGTAGCCATCTTG
AAAACAGTGTTCTTGCATAACTTTTGGTGAAATTATTCGGAAATCAGGTG
CTACATAATCAAGTTCTATAGTGTTGTCTATGGTGCATTCAAACGTTGTT
GTGAGAACATTTTTTGATAATTGACCAAAGAGTTCTCTCAATGTGCCTGT
ATGGATGGTCaaagttttgttgttgttgattttaTCGTTTCTTTGGAAGA
GGAACCATCTTGTCGAAGATGCATCATAGAAAGGTAGATACCAATTCCTG
GTAGATGGACATGCTAACTGAAGTCTTAGTAACTGACATTCAAACTGATT
AGAAGAGTCGTTAAAATAATGTACAGGTAGCGTTACATCAACAGGGTGCA
GAGTGCTTGGAGGTGAGATGATACCATTTGAAGCGTACATATAACTGAAA
TATCTTCCACTGCTATCAAAACCTTTTCCAATGCAATCTCCTTTACCAAA
CAAATCATCGATTTCGTAATCACTTTTTGATGAAGTATTTTCAATCGAGG
ATATGGGCACCAAGTTTTGACGTTGATGGTAGCTCCAAGACATTCTTGTT
TGCTgtgtttaattttgttttttaaactgTAATACAAAGTAGAATGATAA
ATTAtcgatgatgatgattttgttAGGTAAAACCCAACAAGtcacaatgc
tggacaaaaggtttgtagacttctgcaatatttgcaaaatacttcaatat
cgatcaaaaacaagttccca Coding sequence (CDS) from alignment at sc0000705:8099..9868 >TCONS_00028819 ID=TCONS_00028819|Name=TCONS_00028819|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0000705:8099..9868 (Clytia hemisphaerica)
CTAGCCGTTTGATTGTTCATGACTGCGTTTTAAGACACGactttcttttt
tcatcttcgAGTAAGAATCAATTCCGAGATATTGTTGAAGACAAAAAGGC
AGATTCTCCTTCAGATACTGGTCATTGTTAAGTCGTAAGCAAGCTAACCG
AGCATGATGTTTTAAACTACGATTAAAAGATGGTAGATAATGCCGTGGTA
ACAAACTCCTTTCTATGTGGTAAGGATCAAATTCTTTGGACTCCAATACA
ATTTCTCGTTTATCCCAATTGAACGTGACATTGTCGAGtttatcaaattt
aaaagaGATGACCACATCATTTGATTGTATATCAATCAGGTTGAAACCAA
TAAAACATCGGCCAAATATTGGATGTGGTTGAAATTCAATAATGTAGAAT
TGATCAAAGaatctttcaatttttgttttctcaGAAAAACTATCAAGGAA
AATCTCATCCTTTAATTGTAAACCGGTTTCATTTATgttgaagatttgaa
aaactTGACTTTCTTTATCATCGTCGTCAACAGCTCCATACACCAGATAA
CAGAGTGATCCTTTAAGTTGACCAAACTTCATGAAATAATCGTATCCTTG
CAATGTGAACTCGATATTGTGGATAAAATATTCGTTACCGTAAAAATCAA
ATGCTAAAAGAGATTTATTTGGATAGTCCATAATGAGTAGCATGTCCAAT
TCAAGGTTTAAGAAAGTCTTACAGTTCCAAATGGACATCAATCCAGTGCT
AGGAGAAATATTCCTGATACGTTTGAAAAGGGAGGCTTTTTTCTCATCGA
ACTTTATGATATCGACACAATAGCGATGTTCAAAATAATGTTCCAGAACA
ACTAAAATGAGGTAGCCATCTTGAAAACAGTGTTCTTGCATAACTTTTGG
TGAAATTATTCGGAAATCAGGTGCTACATAATCAAGTTCTATAGTGTTGT
CTATGGTGCATTCAAACGTTGTTGTGAGAACATTTTTTGATAATTGACCA
AAGAGTTCTCTCAATGTGCCTGTATGGATGGTCaaagttttgttgttgtt
gattttaTCGTTTCTTTGGAAGAGGAACCATCTTGTCGAAGATGCATCAT
AGAAAGGTAGATACCAATTCCTGGTAGATGGACATGCTAACTGAAGTCTT
AGTAACTGACATTCAAACTGATTAGAAGAGTCGTTAAAATAATGTACAGG
TAGCGTTACATCAACAGGGTGCAGAGTGCTTGGAGGTGAGATGATACCAT
TTGAAGCGTACATATAACTGAAATATCTTCCACTGCTATCAAAACCTTTT
CCAATGCAATCTCCTTTACCAAACAAATCATCGATTTCGTAATCACTTTT
TGATGAAGTATTTTCAATCGAGGATATGGGCACCAAGTTTTGACGTTGAT
GGTAGCTCCAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028819-exon-sc0000705-1491911889:8099..9868 | TCONS_00028819-exon-sc0000705-1491911889:8099..9868 | Clytia hemisphaerica | exon |
| TCONS_00028819-exon-sc0000705-1510915933:8099..9868 | TCONS_00028819-exon-sc0000705-1510915933:8099..9868 | Clytia hemisphaerica | exon |
| TCONS_00028819-exon-sc0000705-1575043694:8099..9868 | TCONS_00028819-exon-sc0000705-1575043694:8099..9868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000705 | supercontig | sc0000705:8099..9868 . |
Blast
The following BLAST results are available for this feature:
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