TCONS_00028823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028823
Unique NameTCONS_00028823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028823 ID=TCONS_00028823|Name=TCONS_00028823|organism=Clytia hemisphaerica|type=transcript|length=346bp
NNTTGTTCAAACTGATTGATATATTCTGCGATATTCATACTCGTATCTCT
TTGAAACGTTTCGAATTGTTCGTATGCAGTAAACATTGCCTGATCTTTTG
ATACTGCATAGAGTTCTCTCAATTTGGTTATAAGCACATCTAAACCCTCT
TCGACATTTAGCTGTTCTTTCGTTAATGTTGCACGTGCTTGGCGAACCTT
TGGGGATAAACTGAGATACAACACAGGTCCCTGTTTTGTTTTAGNTACCA
TGTAAATTGGTTGTTACTCACCATTCACAATAGTTGGACATCAACCAACA
GGAtcacttctttatttaattattcgACTAGAAGAACAATGTTAAC
Run BLAST on NCBI

transcript from alignment at sc0000705:75501..75846

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028823 ID=TCONS_00028823|Name=TCONS_00028823|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0000705:75501..75846 (Clytia hemisphaerica)
GTTAACATTGTTCTTCTAGTcgaataattaaataaagaagtgaTCCTGTT
GGTTGATGTCCAACTATTGTGAATGGTGAGTAACAACCAATTTACATGGT
ANCTAAAACAAAACAGGGACCTGTGTTGTATCTCAGTTTATCCCCAAAGG
TTCGCCAAGCACGTGCAACATTAACGAAAGAACAGCTAAATGTCGAAGAG
GGTTTAGATGTGCTTATAACCAAATTGAGAGAACTCTATGCAGTATCAAA
AGATCAGGCAATGTTTACTGCATACGAACAATTCGAAACGTTTCAAAGAG
ATACGAGTATGAATATCGCAGAATATATCAATCAGTTTGAACAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016350XLOC_016350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028823-exon-sc0000705-1491911889:75501..75846TCONS_00028823-exon-sc0000705-1491911889:75501..75846Clytia hemisphaericaexon
TCONS_00028823-exon-sc0000705-1510915933:75501..75846TCONS_00028823-exon-sc0000705-1510915933:75501..75846Clytia hemisphaericaexon
TCONS_00028823-exon-sc0000705-1575043694:75501..75846TCONS_00028823-exon-sc0000705-1575043694:75501..75846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000705supercontigsc0000705:75501..75846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96419	4.42376	5.40091	5.96467	6.58136	3.4055	7.28058	5.41406	2.61298	5.19568	0.643837	1.5809	2.38864	1.39773	1.37926	1.54404	1.16641	0.769971	1.65169	0.350038	2.49999	2.15226	0.890758	1.899	0.930201	3.92318	0.710174	0	1.43374	1.63754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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