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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028847 ID=TCONS_00028847|Name=TCONS_00028847|organism=Clytia hemisphaerica|type=transcript|length=510bp
TAGGGTGAATGATCGGATAATTCTGGACAATGTTGATAAAAGTTCTCATT
TTCGTTTGTTGGTTGGTTTACAGCGTGAATTCGAGTGGCAAAAATGAAAC
TGGACTTGATCCTACTGGtgaaaatgtttgcaccagaaccatcaaataTT
TTGTGAATAAAACACAACTCTACATGCGCCAAGTATTGGTTCCTTACTAC
GATTGTGATGGGATCAGTATTTTTGGAGATTGTCCGTTTTGGGCTCAAAC
CAAAAAGTTCAGATCTGAAAGTAAATCATCAGTGAAAAATGTATTGGTTG
TACGAACGAAAAACATATCTGAATGCTGTCCGGGATATCAACAATACAAT
TCTTCATGCCCAACAGGTGGTTATGTTTGTTATGGTGGtttgttaaaagt
tttgtttttagataagagtgatatcgatattgcttactcatcaattttat
tttacaaactttttgatattgaattgacacgaatgtggagcaagattggt
cagaaagagg Run BLAST on NCBI protein sequence of TCONS_00028847-protein >TCONS_00028847-protein ID=TCONS_00028847-protein|Name=TCONS_00028847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MLIKVLIFVCWLVYSVNSSGKNETGLDPTGENVCTRTIKYFVNKTQLYMR
QVLVPYYDCDGISIFGDCPFWAQTKKFRSESKSSVKNVLVVRTKNISECC
PGYQQYNSSCPTGGYVCYGGLLKVLFLDKSDIDIAYSSILFYKLFDIELT
RMWSKIGQKE Run BLAST on NCBI transcript from alignment at sc0000708:100159..104239+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028847 ID=TCONS_00028847|Name=TCONS_00028847|organism=Clytia hemisphaerica|type=transcript|length=4081bp|location=Sequence derived from alignment at sc0000708:100159..104239+ (Clytia hemisphaerica)
TAGGGTGAATGATCGGATAATTCTGGACAATGTTGATAAAAGTTCTCATT
TTCGTTTGTTGGTTGGTTTACAGCGTGAATTCGAGTGGCAAAAATGAAAC
TGGACTTGATCCTACTGGGTAAGAGCATAACACTTTCCTTTCGTTTtgaa
ataagagtgatatcgcttgcttactcgtcaattttaattcacaagctttt
tcacattggattgacacagatgtggaacaagattggtcagaaagaggaaa
agaacaaCAACTTTTTGCTtaatcagcataatataacaatgggcagacac
tgtcctgatatgaaacatgtgtctgatatgaaacgggaacactcatttaa
aaataaatccttTAAGGCTATCTAATAACCAACATTCAGCTACTTTGTTC
AAGGTTGTTGGTTCAACTTTTAACTAAGGTCATACCATAGATTTGATATA
GGCACTAAATAAACAACAAgctatattttcattgatttcctcATGTTCTT
GTCTTGTCCGCAGCAATGACATTATcgttcactctccttccttaatgaaa
taatttttttgctgtaTTTTAATCACTTTTTCCATCAAAACGCGGTCTAT
TCCAAAAGGAGTATTAAAGTTTTCCTTATAGAGAGGcaagagcatcaaaa
taattgctaattatgtttcgttatgacgtttcaaattGCGAGAAAGATGC
GAAAAATATTCCTATTTAAATATGAAAATTaaatgttgacaccagaaata
tTCAACCGATACACCACGagcctccaaaagattttcataccaaatTGAAG
CCAAGACCGCACTCAAGTCTAATATATGTAACCAGATTGCAGCGGGTCAT
AGTTTTCTTACaggcacggtaaacctctgaaggcgcttgaaaactAACCA
TCTGTGGAAAATAGTCCTCAAACACAATCATGCAACCTTGCTGTCATTCT
CAGTCCTTTGAAACGAGCGTGGTCCCTCCGAAATCAAAAATTGCATATTT
GTCAGATTGTTACGTTTTAACCCattcctttagagcttcagcgtggtggg
cataGGAAACATttacaatctgatctcaggttgaATGTATGTCAATTTTA
GCTCGTCTTAGCTCGTCCCTTTTAAAAGTATTGCGGTAactccaattttt
ttaaatatgacaATTAGCCGTTATAAccaatttatttttttagtgaaaat
gtttgcaccagaaccatcaaataTTTTGTGAATAAAACACAACTCTACAT
GCGCCAAGTATTGGTTCCTTACTACGATTGTGATGGGATCAGTATTTTTG
GAGATTGTCCGTTTTGGGCTCAAACCAAAAAGTTCAGGTAAGTCTTAGAT
ATTATACTGTATCATCGGTTGAAAGTAGATCTTAGCTTAAAggctttgtt
ttcaattaagagtgatatcgtttgcttctcataaattttgatttacaagc
ttttttacattgaattgacacggatgtggagcacgattggtcagaaagag
ggaaagaaaaacatttttttatatcagcacaatataacaatagggagccA
CCGTCCTGATGTAAAAATATGTAaagataaaacctttaaaagatTATTTA
GAAATTATAACGTTATGTCGGGTCTTTACCCCTTTGTGCGCgctgttttt
gtttgaaaaagttgaaatttttctgattctttttttgaaactcaaaactt
aaaagtgccataaaagcttgtagcttttgatttagaagatggttttggta
ccattggaaagctatttttatattctttctaAAATCGGTTTATGCctctt
taaatcaagtggtcaggagctattgcctcagtattttggcttgtttttga
CGCATATACGTGTCCCTCGTGGTCTAAGAGTTAATTGAATGGTCGAGAAG
TCGCTATGTGAGAACATGGTTTACTCAACTTTCTGGCACGTAACATAGAG
TGCGTTAAGAGCCCTTGtttcttccactttgtttcTTGTTTGGAATAAGC
AACGAGGGGAAATCAAAGCTCAACTTTCTAGTTAACATTCAACATTCCAC
TACACCCTACTGCGCCAAGCACTGCGAAAACGTTATACCTTAAGAACACT
ACTTTTGGCGAGGAACACAATTTTGTATATTTGCAAGAACATAATTTTGG
CTAACGGGAGGGTAAATCAGTTCTTTTCTGCCTAAAAAtaagggacaagc
tggagtttttacaagctcttatttgatttggttggtcgttaagatgtatt
gaatcttattactttttctaaagaacgcgtcatctctatcactttaaatg
accaattagtgaattatcttgtaaaaactccagctcatcccaaaaaTAAG
TGTTTGCAAAAAAGGGGGtttatttcaaaaatcgaaaattcgccaaaatt
aattcccttTAGATACTAAATTATTATAGGGTGTTTACGGggccttgaaa
accttgaaaaccttgaaattggACTAAGCAACTTTGATAACCATGAAAGT
GATCGTAATGTGAAAGATTTCCTTGAAAACCTTGTAAAAGCATGATTGTG
ACAGTATAGTTGTTTAGTTTTGGTCCTCACTGAAGTCGATGCTAAAGCTC
CAAAAATTCTCTTTCTCGCATCGCTCGTAATCGTTTTTTATGGACCAAAT
GCTGGTACTAGACTTTCACGCACCTCGTCAAGTACGGTGATATCGTAATA
TTCAAATCAATTTGAGTTctgaaaaacattgaaaatcgctaaaatattgC
CAAAAAGAACTTTAAAACGTATACTATTTAAATCAATTTGAGTTCTgaga
aaaacattgaaaataccCAATATATAATGgttcaaaaaaccttgaaaaat
cgctaaaatattgccaaaaaatccttgaaaaccttgaaaatggtAGAAAA
ATTTCTCTATATAATATAGGTGTTGGATGTGATTCATCATTcttagtggg
gtcgtttagcataatttacgggaaaacaatatgatctagctgaaactttc
tccagaccttctctataggatggttatgcctcaggaaaaattcccctaaa
atcccactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgg
tggaacatcccttttttggaacatttcttttttccccaggcaaaacccta
agggcgaaattttttgaaaatttcaaactcattttcagatattatcaagt
ataccattcgaaagctctcgaaagactatatagaagacttttaaaccggt
atagccgatttcattacctaactcaagataattcacgcagaagacgctgt
ttatggtcaattttgaccaaagtgtggcgaaaagtggaacttgcgcatga
aatatctcgagttaggtaaggaaatcagctataaccgtttaaaagtcttc
tgtaTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgcccttaggattttgcctggggaaaataga
aatgtcccaaaaaagggatgttccaccagtgggattttaggggaattttt
cctgaggtataagcatcctataaaaaaggtctggagaaagtttcagctag
atcatatttttttcctacaaacagcctgtatttttgtaacacgaccacac
tatctGTCATTTATTATTATCATTACTATTTAGATCTGAAAGTAAATCAT
CAGTGAAAAATGTATTGGTTGTACGAACGAAAAACATATCTGAATGCTGT
CCGGGATATCAACAATACAATTCTTCATGCCCAACAGGTGGTTATGTTTG
TTATGGTGGtttgttaaaagttttgtttttagataagagtgatatcgata
ttgcttactcatcaattttattttacaaactttttgatattgaattgaca
cgaatgtggagcaagattggtcagaaagagg Coding sequence (CDS) from alignment at sc0000708:100159..104239+ >TCONS_00028847 ID=TCONS_00028847|Name=TCONS_00028847|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0000708:100159..104239+ (Clytia hemisphaerica)
ATGTTGATAAAAGTTCTCATTTTCGTTTGTTGGTTGGTTTACAGCGTGAA
TTCGAGTGGCAAAAATGAAACTGGACTTGATCCTACTGGtgaaaatgttt
gcaccagaaccatcaaataTTTTGTGAATAAAACACAACTCTACATGCGC
CAAGTATTGGTTCCTTACTACGATTGTGATGGGATCAGTATTTTTGGAGA
TTGTCCGTTTTGGGCTCAAACCAAAAAGTTCAGATCTGAAAGTAAATCAT
CAGTGAAAAATGTATTGGTTGTACGAACGAAAAACATATCTGAATGCTGT
CCGGGATATCAACAATACAATTCTTCATGCCCAACAGGTGGTTATGTTTG
TTATGGTGGtttgttaaaagttttgtttttagataagagtgatatcgata
ttgcttactcatcaattttattttacaaactttttgatattgaattgaca
cgaatgtggagcaagattggtcagaaagagATGTTGATAAAAGTTCTCAT
TTTCGTTTGTTGGTTGGTTTACAGCGTGAATTCGAGTGGCAAAAATGAAA
CTGGACTTGATCCTACTGGtgaaaatgtttgcaccagaaccatcaaataT
TTTGTGAATAAAACACAACTCTACATGCGCCAAGTATTGGTTCCTTACTA
CGATTGTGATGGGATCAGTATTTTTGGAGATTGTCCGTTTTGGGCTCAAA
CCAAAAAGTTCAGATCTGAAAGTAAATCATCAGTGAAAAATGTATTGGTT
GTACGAACGAAAAACATATCTGAATGCTGTCCGGGATATCAACAATACAA
TTCTTCATGCCCAACAGGTGGTTATGTTTGTTATGGTGGtttgttaaaag
ttttgtttttagataagagtgatatcgatattgcttactcatcaatttta
ttttacaaactttttgatattgaattgacacgaatgtggagcaagattgg
tcagaaagagATGTTGATAAAAGTTCTCATTTTCGTTTGTTGGTTGGTTT
ACAGCGTGAATTCGAGTGGCAAAAATGAAACTGGACTTGATCCTACTGGt
gaaaatgtttgcaccagaaccatcaaataTTTTGTGAATAAAACACAACT
CTACATGCGCCAAGTATTGGTTCCTTACTACGATTGTGATGGGATCAGTA
TTTTTGGAGATTGTCCGTTTTGGGCTCAAACCAAAAAGTTCAGATCTGAA
AGTAAATCATCAGTGAAAAATGTATTGGTTGTACGAACGAAAAACATATC
TGAATGCTGTCCGGGATATCAACAATACAATTCTTCATGCCCAACAGGTG
GTTATGTTTGTTATGGTGGtttgttaaaagttttgtttttagataagagt
gatatcgatattgcttactcatcaattttattttacaaactttttgatat
tgaattgacacgaatgtggagcaagattggtcagaaagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028847-exon-sc0000708-1491911889:100159..100276 | TCONS_00028847-exon-sc0000708-1491911889:100159..100276 | Clytia hemisphaerica | exon |
| TCONS_00028847-exon-sc0000708-1510915933:100159..100276 | TCONS_00028847-exon-sc0000708-1510915933:100159..100276 | Clytia hemisphaerica | exon |
| TCONS_00028847-exon-sc0000708-1575043694:100159..100276 | TCONS_00028847-exon-sc0000708-1575043694:100159..100276 | Clytia hemisphaerica | exon |
| TCONS_00028847-exon-sc0000708-1491911889:101352..101495 | TCONS_00028847-exon-sc0000708-1491911889:101352..101495 | Clytia hemisphaerica | exon |
| TCONS_00028847-exon-sc0000708-1510915933:101352..101495 | TCONS_00028847-exon-sc0000708-1510915933:101352..101495 | Clytia hemisphaerica | exon |
| TCONS_00028847-exon-sc0000708-1575043694:101352..101495 | TCONS_00028847-exon-sc0000708-1575043694:101352..101495 | Clytia hemisphaerica | exon |
| TCONS_00028847-exon-sc0000708-1491911889:103992..104239 | TCONS_00028847-exon-sc0000708-1491911889:103992..104239 | Clytia hemisphaerica | exon |
| TCONS_00028847-exon-sc0000708-1510915933:103992..104239 | TCONS_00028847-exon-sc0000708-1510915933:103992..104239 | Clytia hemisphaerica | exon |
| TCONS_00028847-exon-sc0000708-1575043694:103992..104239 | TCONS_00028847-exon-sc0000708-1575043694:103992..104239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:100159..104239 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011489 | EMI_domain |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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