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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028851 ID=TCONS_00028851|Name=TCONS_00028851|organism=Clytia hemisphaerica|type=transcript|length=565bp
gATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCTTGTAT
CAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATTCTAA
AGGATGACAAAAAGACTTGCGAAGTATGAAGTCTACAACAGTTATCATTT
TCGCCGTCTTGGCTTTATCTTTGGTGGTCGATGGTTACCCAATGGAAAAT
GAAAGTCAGCCCAAAATGGAGCTTCCTAACGTTTTCGTTTTGGATGATAA
TGTGGAAAGCAAAGATCAAGATGTTTTTAGACATAGATGCACCAGTCTAT
ATTGCATTTGGGATTCGGAACTTTGCGAACATTGCCCACAACACATACCA
TAAATTGTAAATCAGCCTTCAAAAAAACCCGAATCGACAACGAAACaaca
acagaaaaaatattttttttatgaattatttATGTTGTATTTATCGTATA
ATGTATCAAtttatatcgttggaaagataattcagCCCTTTAAGTTTCCA
CGGCTTTAaaatttgacaaccttcttaacctaaggttgaactaccactgg
tgtaaaaatgaacgt Run BLAST on NCBI transcript from alignment at sc0000708:108559..118153+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028851 ID=TCONS_00028851|Name=TCONS_00028851|organism=Clytia hemisphaerica|type=transcript|length=9595bp|location=Sequence derived from alignment at sc0000708:108559..118153+ (Clytia hemisphaerica)
gATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCTTGTAT
CAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATTCTGA
AAGATGATAAAAAGACTTGCGAAGGTAAATCCGACTAATTGTCGACCAAA
CTTATTTcctttggaaatattttgatattacattttcataacttaaatAG
CTTTGCCATGAAATAAGAGGTTTCATTTATGACTATAAAAGGCTTTTGCA
GGCTAAAAATCTTCAAAGCATTTGGATATCATTTCAAATAAAGTGgatga
agatttaaaaattggAGGAGCGGGGGTGTATAGAGAAGTGTCTCatccag
tagcgtggtgggtcgactaaaattcggGCAAACTGGGGATGCAATTtcag
aagattttgattttggcgccccctatgaaaagtaaatattttttaaaaaa
taactcGAGTGAAGCGAGCACgaaattttctctctttttggccgaACACT
CTCACatctaaggtgtaaaagagcaaaggAGCGCCGAAATTAGTAATTAA
AGGCGTCTTTTTGCACCCACGGTGCCCCTTTGAAAAAAATCCGCTGGGGT
CATCCAAATAAAGTGGATGAAGATttaaaaatggggggggggtataTAGA
GGAGTGTCTCATCGCCCTGCAAGATTTCtattattcaaagaaaattctgt
CGCGCTGATTAGTCAAACAGGTCAAAAAAAAGACCAAATATTTCGAGAGC
TCATTTGATTAAACCACAAACaacatctttttttttaaatctgtagATCA
TGATGAATGTCTTGTCTTGAATGGAGGTTGTTCACATGCTTGTATCAATA
CGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATTCTAAAGGAT
GACAAAAAGACTTGCGAAGGTACGACTCAAAAACTGAAttaattttaaag
gttttgtttttaaataagagtgatatcgctTGCTTATTTGTCAATTTTAA
cccacaagctttttcacattggattgacacatatgtggagcaagattggt
cagaaagaggaaaagaacaaCAACTTTTTGCTTACTTTTTgaaagacact
gtcctgatatgaaacatgtgtctgatatgaaacgggaacacttatgtaaa
aataaaacctttaaatttggAATCGACAGTGAATATTATGAAGTCTTTTT
CACTGTTCTAGTATAAGCCTTATTTTATTAAAGAGTGAACAGATATCAGA
AGGGCCAATGTGTCTTGATGCATTCTACTATAACAAGTTTTATGAGAACG
AGAGAATTTCTTTACAACCTAAAGAGGCTGTTTTGGTTTCTATGAACTCC
CAAGCTCTTCcccaggcagggtgttagggaaatatggtgatagactctct
accttcactcacaTGTCGCTATGAACTCTAGTTTGAAAAATACCAAATCT
AAACTTACATACGAGATCAGCCTTTAAAGTATATATCGAAAAACTATTCC
TTAACAGATACTCGTTCACCAATAACCACGACATCTCTTACCACGACTAC
TATTAAATTAACACCAACATCTCTCTCAGTCACCACTAAAATTGTCACTA
ACGATAATCGAATACACCATCAACCATCAGTTAAACCATCACCAGGACCT
CATCATCATCGATTGNactctctaccttcactcacaTGTCGCTATGAACT
CTAGTTAAAAAAAAGACCAATTCTAAACTTACATACGAGATCAGCCTTTA
AAGTATATATCGAAAAACCATTCCTTAACAGATACTCGTTCACCAATAAC
CACGACATCTCTTACCACAACTACTATTAAATCAACACCAATATCTCCCT
CAATCACCACTAAAATTGTCATTAACGATAATCGAATACACCATCAACCA
TCAGTTAAACCATCACCAGCACCTCATCATcatcgattaaaaacatcacG
AAGTATCTCAAATCAGACTAATCTGAAATCTTCATCACCTAATAACACTA
ATACTAACTTAACCAGTAATTCATTAAACATTACAACGTTAAACTCCGCT
AACCATGACATTGATAAACTGGTTAAATCCAGTGATGGCAAATTACATTT
ACATTCACCTTTGATAGTCGGTTGTATTGTAGCTGTGGTATTAATAGCTG
CTTGTATTGTGGTCAAAGTATGGCTAAAAAAGAATTCTTAACATATTATT
GTGATAGACCATGGTGTTCTAAAGTAACTTTAGTACGCCATGTGATAGAC
TTAACAGACTCGATCTTGATTAATTTTCAAGCAGAGGTACTAAacgttat
ttttataagaacaaactatatatgaacataaggcttcgatggccgaaatg
ttgagaacaagttaagaacattttaaggctttgccgaTCCTAAAACAGCC
GGTTTCTTGCATTGGGCAAAAGTGctaaaaaaatggtgaaaataagaaaa
tgttaagaacatttttaggcttgagactcaaaaagttttaagaacatccg
gaggcttcaaaaagtttggatgttcttataaaaaaaacgtgtctATTAAC
AATTATCATTGCACTCTGCAAGATAGTTTGACAAAAAATTGGTGAGCTCT
TCGATTCTGGAATTTCTTATGGCATCAACACCCAATTTTTACAGTAATGT
TGATTCGTTCTTTTTGCATAGTGGCtttggttttgattttaataGCCTGA
ACATTGGATAAATTATGACTTTAGCCACACTCACTGGTAtgatagcgagt
ttatgtatcgaaCGATATCGAGGGCAACGGTAAATGAAGTCAACGCAAAA
AAAACTCGCTATTGTGTTTTACGGTGAATCCGAAAGACTTACTTTAGCTT
CGTTCTATAGTTGTCCATTTCTATTTTTCGACAAGAGTGTTATATTTTGG
CATTTGAGCTCGCTCTGTGACATAAAGATATTTGATGTGATTCTACTGTC
AAAAGTGAAGGggtatttttagtttttgcttgcataaataaaataaaatt
atatacAGTTGACcgacagttgacgctctctgatTTGATTTAAGATCCAT
TGGATTTCCATCGAATAGTAgattttcgaattacagagcaTCAACTATAC
CTCGAAATTTAATGGGAATATGAATGAAGCAATCATCTTTGTGGAATTCA
AGAAGTaaatgaatttcattttttggacctaggggccatccatatagtac
gtacgcagtgaaggggggagaggggggtttagcaaaagcgtatgtctatt
gtttgaatgacgtcatttatatttttctcgtaCAAGGGGGGATggggtgt
caaatatttggaaaattcttGCGTACGTACATGACCCCCTACCTCTGAGG
TCCTTtagtccgtctgttaccagcttttctcgagattggctcattagttt
tttctgatttttggcacaaaggtgcaaaattATGATGCCCGAAATGTAAC
ccgagcccgattttcgaaaaaaccgGCTGAAATTCCCGGAAATATGCCTG
AAAAACCggcatttttggcatttttctcGAGAtatcatcattagtttttt
cctgatttttagcacaaagatgcgtattagcaatgctcaaaacatggctg
agtcctatttttataagaaaaattcttttctggccgaaaatgccggaaat
atgccgaaaatcgccgtttttgcagattttcattggactttttcctgata
tttctttgttttttcacacaaaattaTTATcgataacaatgcccaccatc
aaacaCGTTCGACGGAACAGCAGAGAATCGCCGGAAGAAcaggtttttct
tgaatttctcgagttttactttatattttttcatgaaattttgcacactg
atgcaaaatagcaatacctaaaatgtgacagagccagAATTTCAATAAAC
ATACTTTTCCAGCCGAAAAAAACtggccggaaaaaccggtttttagggat
tttcttgagattttatccttagttttttctgatcttttgtacaaagatgc
gtattagcaatgcccaaaacatggcaaaTTTTTATCCTGCCAAAAATGCC
GGTAATCGCCGTTTTTTTCAGAATTAAttgggttttttggacctacgccg
gtggaggttctataaattaacctttgtccgttcgttcgtccgtccgttcg
ttaccaacttttctcgagattggctctttcattctttatgattttttgca
caaagatgcataactataaaccctcaaatgtgatgaaacccgattttcaa
aaaaaaaacgggttttttggactttgtgaaaaattggatcattaattttt
tctaatttttgcatgaaagtaggtaacagatggctcaagctgatttttgt
aaaaaacgaatttttcagctcaaaaaatgcatctttatctataagaatca
ctatttataagcatacatcaatgttcttagctgaattactcaattttttg
ttgAGATGTTCTTTGTGAGGGGCTTACGATATTTCGGAATCGCCGAAatt
aacccttttttcttcagaattgcggaaatcgggcaaaattcccgCAAAac
tccttcggtatttcggaatgctgaaattgtttcggtatcggaaatccatg
agcttttgttttggaatttcggtattataaagtttttcggaattcataca
tgaaaaatcaaatttgatgaaaaattagtcaaaacgaggaaaaataccca
aaaaagtcggtatcggaattgcaagaaTTTTTTACGGAATAtcggaaatt
ttagcaaaattattcggtatttcggaaatcacaaaccccgtacgccccca
tTTCTTTTTCATTCGACCCCCCACTCAATGctcattaaaaaacttttttc
tttttttgatgtgtataagaagcgtaaaagtcgacaaaaaaaacaagcaa
aagagggctatgaaaaatttccctcccctccccctgtacgcaagtatatg
cttttgagaagaccccctcTTCCCTTTAGTGTGTACGTACTATGGACGGC
CCCCTAGCTGACCGCATTtcacaaatgacccctcaagatttaagtttatc
cttccaTTGCAAAAGGATTGACTCTTTAAGAGTTAATAGAACTCCAGAAG
AATTGTTTCAAAATGGGGCGATTTTTTCTGAGAGACCCGGTAGATGGCTA
TCCACGGAAATTATAGACTTTATATtctaacaaaaatatttattgtttgC
TAATGGAAGACAAGAAGCCGGAgtggcgtgaaggtccagctgacgtggca
ataaccgaatatcgttcgtaccgggttccttaagtgacgcaaaaaaaatt
ccttatTCCCATCCTCCAATCTGAGCTTCTatttttgacactttctttgt
attgctttgtattgttttgaaagtttttgatgcatttcccgaaatttcga
aacttttgccgctgatgggattcgaacccactatatacaaagcacctatg
attagaacgccagcgccttaaccacgCGGCCATCTAGTCACAACTGCATA
AGGgagttcaaagttccttataaacatggtatttactccaaacgcTAGCC
GGGGGCTaaaaccattgagtttgaagcccgaagggctagagtagaatctc
taacctttctcaggcaagaaaaagtgaagcctNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTCCAAAAAGACCCaccagatcaaaag
ttaaggggtggtacaggaaaagcccccccctagttctgaaccgcccctaa
aagcctagtttgaatagggttaagtctCTTATGGGAATTGAATGATCACA
ACCAATTTaatgaagaaaacttttttcctcGGAATAAAAAAGCAAGGCAG
AAAAATCTGAATTGCAAGGATTGTATTGTCTCGACTCGAACTTGTTTCGA
CTCGCGATGTTTAAAAATGAAAGCATGTGTCGCCATGATACTTTCACAAA
AGGAAAAAAGAGCATGTAATGAAGAATCGTTATATGGTAATTAcctatta
aaaacaaaatctttaaaacatgCTGGTTTAAAATTAGTAAAAGAGGtgta
aattacaaaaaatggcaagcaaaattttataaaaaagtgtggtAAATCAA
TGCCATAAAACTGCTCGATTAGTTAAAGAACCAGAGCcatatatcaatat
tttgaaagctgttttccattaaaaacctaaaaagtaCATCACTCAGAGTT
CAGTGCTTATGCACTAATCATATGTAcagtaatgattgaaaattttttgt
aatttttgtattgtaaaattttagaaattttagaaattatctaatattta
ttttcatctttcatCATAAAATGTTGATAATTTAGCAGTCGAGTAAAAAT
TAACGCCGGATTAAGGTAAAATTGTAAATTATGTCCCTCTACGACGGCCT
TCTTGACTCCGACCCTAATCTCCTAAATTGTCAAGGTCCTCACAAAAAGG
GAAAAGGCATGCTCAAAATAAATAATCATGGAAAGACCAAACCTGGTAAA
TCATGGCTCTTCTTATGACGGACCTTTCTGAGACGGCCCTTTCTACGACG
ACTTTAAgcgctctgaccatagtgaatttttcatagttatcgtgtataaa
atgtatttttctgactgatgtaatgaacaaaactatggcatgttatactt
TTTCTGTTGGgtcaactattcctgaatctgagaattcaaaaattgcattg
aaaaaacttaacgaagaagaaaattaagacACTTTGCGAAGACAAGTATT
TTaactttgaggaccttattttcggcgaagaaaagacattttgaaaaaaa
tcttaagatagttcaatcttttgcagataattaaaaaaaaattgaaggtt
aattacccatcgaaactaagcacttttttagGGTAATATCACGCTTTATT
TATGTCTTTTTCAGGTTCATAATATCTTTTTTGTAATTAGATTGCTaatt
actcttgatagaataaattcaCAAACAACTTTTAAAGACAGTGTAAAgga
actcaaaacaaaagttttatcttcaaatctcaTAACTGATCTTTTGACTA
TGGTTGAAATTCGTGCTCAAAACAAATACGCATGGAAAAATCAAATACGC
GcatggaaaaaaatgaaatctttttGTCGTTACTTTAACGTGTATAGTTG
GAATAATAACAGCTAATttctaaaattgaattttctttcaaaaattaaag
CGTTAAACCTATTGTTAATAGATAGTTGTATGTCTTTGAGAAAAAAGCTC
TTTTCTTATGCTAATGAGTTCTAAATCGAATGAGACACAATAGCTTAAGT
TTTTACTTTTCCAAGGAGTAAACTTTTCTTTCTGAAACgggcgaaaaact
attgttttgTATTGAACATTGGTGACTATTCCGCagtaaaaatgacgtca
taaatcaaATGAATAAATGAAGTAACGCACAGCAGATTTTGTTATTCAGC
AATTTTCTTTGAGGGATATCTACAAACAGAAAGGTAGGTTTCTGccttat
ttttcttcttcaaatcaACTTTACACTCAGTTCATAGACAACTAGCCCGA
GTATTATTAATTGtatcaataaaaatttcaaagaactgcGAAATTTAATA
GAATCAACTTCTTCCCGAATAGCCTTTGGGAGATCATTCAAAAGGCGACT
AGCGATCCGCaatgcatacgtcataattattacttttcactttttttgac
atttgtacgagttgcaatcccacaattcaacgcggcTCAGTTAAAAATAC
GTGCAAGCTgtaatatatcttttgtcaaacgatgcaattaacgtgcaaaa
gagattagcgcaaaggttgatgggattggaactcgtacaaacacatcgag
agtaatgattatgtcaaaaataaaatctatttttagattcagcgcggtgc
gctattgaAAAGGCATTACAGTCTAATTTTTTATCGagcacttttcaaaa
tttaaatttcattcattctttTTCCAGTATGAAGTCTACAACAGTTATCA
TTTTCGCCGTCTTGGCTTTATCTTTGGTGGTCGATGGTTACCCAATGGAA
AATGAAAGTCAGCCCAAAATGGAGCTTCCTAACGTTTTCGTTTTGGATGA
TAATGTGGAAAGCAAAGATCAAGATGTTTTTAGACATAGATGGTAAGACT
TGTATTCTTaggttttcattttttgatttttcgaaaGGTCCCTCCGGACC
TTATTTAGGACCCCCGCCCTGTTCattaacttttgaaaatgtaTTCAGCT
GTCAAAAGAAGGGTTCCTTATTTTGTCTGATATTAGTCTATAAAACTCTT
ATTCTGGGGTTTTAGAGGTACAATACCCCCACCTGGTGTTTATCAAACTT
TGAAGATCTTTCCAAAACGACCCCCCCCTTCCGCTGAAAAAAatagaatg
ggctcttccagaaaatgcctgtacatggggggtggaggataaattgtccg
ggggtagctaaaaatcatcaaaatttgccttgtccggggagtaaatttgc
tctgtccgggggtaatttgggttgtccgggggtaaaacccgttgtccggg
ggccaaaagtcactttttcCGGGGGATAAATCACTAAATATAAATCACTT
GTtatatcccccccccccccccccatattcaatttttttctgaaaaagcc
caaTCTAAGGTACCACCTTCCTGAAGAACTTCCATCAAAGAGGAAAGAGG
ATGTATATAACTTTGCCCGGGGGCAATGATTAAATGTGAATCGACAGTGA
ATCAACCTTTATCTTTCAGCACCAGTCTATATTGCATTTGGGATTCGGAA
CTTTGCGAACATTGCCCACAACACATACCATAAATTGTAAATCAGCCTTC
AAAAAAACCCGAATCGACAACGAAACaacaacagaaaaaatatttttttt
atgaattatttATGTTGTATTTATCGTATAATGTATCAAtttatatcgtt
ggaaagataattcagCCCTTTAAGTTTCCACGGCTTTAaaatttgacaac
cttcttaacctaaggttgaactaccactggtgtaaaaatgaacgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028851-exon-sc0000708-1491911889:108559..108598 | TCONS_00028851-exon-sc0000708-1491911889:108559..108598 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1510915933:108559..108598 | TCONS_00028851-exon-sc0000708-1510915933:108559..108598 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1575043694:108559..108598 | TCONS_00028851-exon-sc0000708-1575043694:108559..108598 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1491911889:109394..109477 | TCONS_00028851-exon-sc0000708-1491911889:109394..109477 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1510915933:109394..109477 | TCONS_00028851-exon-sc0000708-1510915933:109394..109477 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1575043694:109394..109477 | TCONS_00028851-exon-sc0000708-1575043694:109394..109477 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1491911889:117086..117250 | TCONS_00028851-exon-sc0000708-1491911889:117086..117250 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1510915933:117086..117250 | TCONS_00028851-exon-sc0000708-1510915933:117086..117250 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1575043694:117086..117250 | TCONS_00028851-exon-sc0000708-1575043694:117086..117250 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1491911889:117878..118153 | TCONS_00028851-exon-sc0000708-1491911889:117878..118153 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1510915933:117878..118153 | TCONS_00028851-exon-sc0000708-1510915933:117878..118153 | Clytia hemisphaerica | exon |
| TCONS_00028851-exon-sc0000708-1575043694:117878..118153 | TCONS_00028851-exon-sc0000708-1575043694:117878..118153 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:108559..118153 + |
Blast
The following BLAST results are available for this feature:
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