TCONS_00028854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028854
Unique NameTCONS_00028854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028854 ID=TCONS_00028854|Name=TCONS_00028854|organism=Clytia hemisphaerica|type=transcript|length=1979bp
CACAACTATTTTCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAGA
AGTCAGTTTTCGAACCAACCCAAAAGATAGAATTCTTGGGGATGATAATA
GACTCAATCAAAATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTGCCAT
AAAGAAGCAATGCTCAGAAATGTTAGAAAAGGAAAAGGTTCCCCTGAGGG
AGTTATCGAAACTAGTGGGCAGGTTGTCTGCCTCAATGCTAGCAATATTA
CCAGCAACCTTTCAATACAGGAGCCTTCAACGACAACAGATTTCAGAGTT
GAAGGAACAGGGTTCATACAATCACGTAGTGGAATTGACAGAGGAGGtga
aaaaggaaataaattGGTGGCTCTTGAACCTAGAACTTTACAATGGGAGG
AGTCTAATAACCCCACCTCCACAGATAGTAATCCAAACGGATGCCTCCAA
AACAGGATGGGGAGCTGCTTGTCGGAGTTTAAGAACAGGGGGTCCATGGT
CTCTGGAGGAACAGCAGGAACATATAAATGTTTTGGAATTAAAAGCAGCC
AGGATAGTACTATTGACATTCATACCAAGGTTCAGGGCAACGTCGGGCCT
TGAAGTATCTCCTAAAAATGGGGGGGACCAAGAGTGCCACTATGAATCAG
ATAAGCAAGGAAGTCTGGGATTTTTTGATGGCAGGCAAGATCACCCTTAC
TGCCGAATTTCTCCCGGGGAAAAAGAACATAGAGGCGGACACGGAATCCA
GAAGGAAGGACTCCAGCGAATGGAAATTAAAACCATCCCTATTCAGAAGA
CTGAGTCAGGTGAGGGGCACCCCGGACATAGATCTGTTTGCATCCAGAGT
GTCGAACCAGGTTCCAGCttatttttcttggaaaatggaTCCTTTCAGCC
AGGGGCAGGATGCCTTCCAACAGGATTGGAGAAATGTCAGAGGTTATGCC
TTTCCCCCCTTCTCCCTAATAGGAAGGGTGCTAAGGAAAATAGTATCAGA
CCAAACCATGGTTCTTCTGATAACACCAGCCTGGCAGGGGCAGCCTTGGT
ATCCAATAGCACTTCAATTGTCAGTAATGAATCCAATTCTTTTACCTATG
GAAGAAGACCTTCTGAAACATCAAGGAAAGGTTCATCCTCTAGTCTCGAA
CAGGTCCCTCAGGCTGATTGCATGGATGTTGTCAGGGAACAGCTTGCTTC
AAAAGGCGTATCAGAGAAATCTTCGGACCTTATCGTCAACTCCAGAAGAT
CAGGAACTCAATCTCATTACAAATCGGCCTGGGGAAAGTGGGCTAGCTGG
TGTATGGAACAAAAGATTGATCCCGTTCGATGTCCTGTAAAGCATATTCT
AGATTTTCTTACTGATCTGTGTACAAAGGGACTCCAATATAGTACTATAG
GTAATTCTGCTTTCAGAGGACGCGGACGTGGCCGAGGAAGATTTGGTGGA
TGATTGAAATATTATTTCAATGAAAGATACGATTCTTAAACTAAATATTG
AtattgtttctttctttctttatgtTTTATCCCGGACTTGTCCTAGATTT
ACGATGCGAGTGAGGGCGGTAACCAATATTAGATCGTTGGCTTcgatttt
attcataaaatcgGGATTGCACTGCGGGCCCTTCGGGCCCTTGCACAATC
CTCAAATGTACTTTTAGGAATGAAGAAATAATTACTGCTCTCTTGTTCTT
CAATTCACAAACCATAACATCACACGCtccctgaaaatgaaaatgagaat
AATGAGACACGAGATAAATATTatcgtttttttcttcaaaaaagtgCAAT
CTTATTGTATAGATGACTTTTatgattagtatatgtaatcacatgataac
gagtgcaattcgaatataattgcacgagtgatttttttcgaaaggacgag
gaaaattcgaaacaaaaaaatcacgagtgcaattttcgaattgtacgagt
tattatgtgattacgagctaatcgcacaa
Run BLAST on NCBI

transcript from alignment at sc0000708:33488..36875-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028854 ID=TCONS_00028854|Name=TCONS_00028854|organism=Clytia hemisphaerica|type=transcript|length=3388bp|location=Sequence derived from alignment at sc0000708:33488..36875- (Clytia hemisphaerica)
CACAACTATTTTCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAGA
AGTCAGTTTTCGAACCAACCCAAAAGATAGAATTCTTGGGGATGATAATA
GACTCAATCAAAATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTGCCAT
AAAGAAGCAATGCTCAGAAATGTTAGAAAAGGAAAAGGTTCCCCTGAGGG
AGTTATCGAAACTAGTGGGCAGGTTGTCTGCCTCAATGCTAGCAATATTA
CCAGCAACCTTTCAATACAGGAGCCTTCAACGACAACAGATTTCAGAGTT
GAAGGAACAGGGTTCATACAATCACGTAGTGGAATTGACAGAGGAGGTGA
AAAAGGAAATAAATTGGTGGCTCTTGAACCTAGAACTTTACAATGGGAGG
AGTCTAATAACCCCACCTCCACAGATAGTAATCCAAACGGATGCCTCCAA
AACAGGATGGGGAGCTGCTTGTCGGAGTTTAAGAACAGGGGGTCCATGGT
CTCTGGAGGAACAGCAGGAACATATAAATGTTTTGGAATTAAAAGCAGCC
AGGATAGTACTATTGACATTCATACCAAGGTTCAGGGCAACGTCGGGCCT
TGAAGTATCTCCTAAAAATGGGGGGGACCAAGAGTGCCACTATGAATCAG
ATAAGCAAGGAAGTCTGGGATTTTTTGATGGCAGGCAAGATCACCCTTAC
TGCCGAATTTCTCCCGGGGAAAAAGAACATAGAGGCGGACACGGAATCCA
GAAGGAAGGACTCCAGCGAATGGAAATTAAAACCATCCCTATTCAGAAGA
CTGAGTCAGGTGAGGGGCACCCCGGACATAGATCTGTTTGCATCCAGAGT
GTCGAACCAGGTTCCAGCTTATTTTTCTTGGAAAATGGATCCTTTCAGCC
AGGGGCAGGATGCCTTCCAACAGGATTGGAGAAATGTCAGAGGTTATGCC
TTTCCCCCCTTCTCCCTAATAGGAAGGGTGCTAAGGAAAATAGTATCAGA
CCAAACCATGGTTCTTCTGATAACACCAGCCTGGCAGGGGCAGCCTTGGT
ATCCAATAGCACTTCAATTGTCAGTAATGAATCCAATTCTTTTACCTATG
GAAGAAGACCTTCTGAAACATCAAGGAAAGGTTCATCCTCTAGTCTCGAA
CAGGTCCCTCAGGCTGATTGCATGGATGTTGTCAGGGAACAGCTTGCTTC
AAAAGGCGTATCAGAGAAATCTTCGGACCTTATCGTCAACTCCAGAAGAT
CAGGAACTCAATCTCATTACAAATCGGCCTGGGGAAAGTGGGCTAGCTGG
TGTATGGAACAAAAGATTGATCCCGTTCGATGTCCTGTAAAGCATATTCT
AGATTTTCTTACTGATCTGTGTACAAAGGGACTCCAATATAGTACTATAG
GTGGGTACAGATCAGCATTTCAGCTTTTCATGAAAATTGTGATGGGTCTT
CAATAGGGGAACATCCTCTTGTCAAAAGGCTGATGGTTGGTATTTTCAAC
AAGAGACCACCTCAACCTCGTTATGGATTCACTTGGGACGTTGAAACGGT
CCTTAGGTACATAAATGGTCTAGATTCTTCTACAATAGACATTAAGTTAC
TGTCATTAAAACTAACAGTACTGTTGGCCTTAACCGGGGCATCCAGGGCT
TCGGAACTTAACATTCTTGATACAAAGTTTCTATCTAAGTATTCTTCAGT
TTACATCTTTGAACTAGATGGTGTAACTAAAACACAAAAGCCTGGGGATT
CGCCGACTAAAATAAAATTGTTCAGATTTCAGGAGAACTTATCTCTTTGT
GTGTGCCATACAATAGACGAGTTCTTGTCTAGAACTAAGGAACGAAGGGG
AACGGAAACTAGACTCCTAATATCACATATCAAACCATATAGAAGAGTTT
CTACAGACACAGTTTCAAGGTGGTTAAAAACGATAATTGGATTAGCAGGC
ATTGATACTAAGATTTTTAAAGGACATTCTACAAGATCAGCGACCACTTC
TAAAGCTTCCAGTCTGGGGATCTCTGTGAGATATCATCCAGATCTTAGAA
AGAGCTACTCTCGGGTACCTAATAGCCGGGGGGATTGGAATAAGCGGGGG
GATTGGAAAAACTCTCGAAACTTAATAAGCGGGGGGGTTGGAATAAAAAT
ATCCTGGGTGGAAAATTTTTGAAAAGGAGGCTAATACAGCAGAATTAGGA
CAAAAGAGGGGAACTTTCAAAAACATTTTCCCAAAAATTAATAAGCGGGG
GGGTTGGAATAAGAATGTCCTGGGTGGAAAATTTTCGAAAAATTAATNTA
TCAAACCATATAGAAGAGTTTCTACAGACACAGTTTCAAGGTGGTTAAAA
ACGATAATTGGATTAGCTGGCATTGATACTAAGATTTTTAAAGGACATTC
TACAAGATCAGCGACCACTTCTAAAGCTTCCAGTCTGGGGATCTCTGTGA
GGGAGATCTTAGAAAGAGCTAATTGGACAAATGAGTCCACTTTCCAAAAA
TTTTACAACAGAAAAATTGATCCTGGTAAAGGGGAGAAATTCCAAAAGGC
CTTATTGAGTAGCTTTGAACAGGGGTAGTTTAGGACGATGTCCTAGATTT
ACTATCCGAGTGAGGGCGGTAACCAATATTAGATTGGGCGGAGATTTTAT
GAAATGAAATTGAGGATTGTGCAAGGGCCCGAAGGGCCCGCAGTGCAATC
CCGATTTTATGAATAAAATTGAAGCCAACGATCTAATATTGCCCGCCCAC
CATCTCCCTTATTGGTGTTTCATTTCATAAAATATGTTTATTTTTTCTCT
ACTTGTCAGGTAATTCTGCTTTCAGAGGACGCGGACGTGGCCGAGGAAGA
TTTGGTGGATGATTGAAATATTATTTCAATGAAAGATACGATTCTTAAAC
TAAATATTGATATTGTTTCTTTCTTTCTTTATGTTTTATCCCGGACTTGT
CCTAGATTTACGATGCGAGTGAGGGCGGTAACCAATATTAGATCGTTGGC
TTCGATTTTATTCATAAAATCGGGATTGCACTGCGGGCCCTTCGGGCCCT
TGCACAATCCTCAAATGTACTTTTAGGAATGAAGAAATAATTACTGCTCT
CTTGTTCTTCAATTCACAAACCATAACATCACACGCTCCCTGAAAATGAA
AATGAGAATAATGAGACACGAGATAAATATTATCGTTTTTTTCTTCAAAA
AAGTGCAATCTTATTGTATAGATGACTTTTATGATTAGTATATGTAATCA
CATGATAACGAGTGCAATTCGAATATAATTGCACGAGTGATTTTTTTCGA
AAGGACGAGGAAAATTCGAAACAAAAAAATCACGAGTGCAATTTTCGAAT
TGTACGAGTTATTATGTGATTACGAGCTAATCGCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016373XLOC_016373Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028854-exon-sc0000708-1575043694:35476..36875TCONS_00028854-exon-sc0000708-1575043694:35476..36875Clytia hemisphaericaexon
TCONS_00028854-exon-sc0000708-1575043694:33488..34066TCONS_00028854-exon-sc0000708-1575043694:33488..34066Clytia hemisphaericaexon
TCONS_00028854-exon-sc0000708-1510915933:35476..36875TCONS_00028854-exon-sc0000708-1510915933:35476..36875Clytia hemisphaericaexon
TCONS_00028854-exon-sc0000708-1510915933:33488..34066TCONS_00028854-exon-sc0000708-1510915933:33488..34066Clytia hemisphaericaexon
TCONS_00028854-exon-sc0000708-1491911889:35476..36875TCONS_00028854-exon-sc0000708-1491911889:35476..36875Clytia hemisphaericaexon
TCONS_00028854-exon-sc0000708-1491911889:33488..34066TCONS_00028854-exon-sc0000708-1491911889:33488..34066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000708supercontigsc0000708:33488..36875 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0397607	0	0	0.0192217	0	0	0	0	0	0.0192225	0	0.0428562	0	0.0535305	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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