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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028873 ID=TCONS_00028873|Name=TCONS_00028873|organism=Clytia hemisphaerica|type=transcript|length=1901bp
ATTGAGACATTCGTAAAAGTTGATCGCGAAGAGAGGTCCGAgttataaag
aaatatgaattttaaaatatttctagTTTCGTTCGCATTTCTATGTTGTA
CATGGATGTCTTGCTCTAATGCAGATTTGTTTCAAGTAAGAGATTTCAAG
ATGCTGGAATGCTCTGAACAAAGAAACATCACTTTAATTATCAATAATTT
ATCAAGGAGAAATTTGTATCGATTAACTTCTCTTCTTGATGATGTGATTG
AAAACGAGGCCTGTTATGCTGTATACGTTTATCAGAAGGATTACGATAAT
TCCATTCGACTTCGGAAGGGAAATGACACTCAACTGGAGATGTTTTTTGA
TGCTGATGATTATCCGTATATAGAAAGTATAGAACCATACAAGACCTTAA
GATTTTTAAATCAGAAGCTGATGGACGAAAACGCGTCAAAACAAACACTT
GTTTATATGACATCTATGACATATTATAATTCCGATGAAACTGAACAGTA
TAAGCTTTTAAAGAGACTTCAGAATGAACGCTCCTGGGATATCATTATCC
AATGTGGTTATGGAGGAAAGAATACTTGTCCATTAGACTTTTGGATGCCA
ATGCAACGAATTTTTCCGAAAGTCCctaattcatttttcatctacCCCTA
CGATTGGTTAAACTTTgtagaaattataaaaaacccaAAATATGATCCTT
ATGAGTTTACGTATCACACCATACGCTCAAGGCAAGACTTCTTTAATCAA
ACCTGCTTAAAAAATGTAAAGACACTATATGTTGTAATGAAAACAGTAAC
AACATTTTATTTTCCAATGGCTGCTGCTATCTTACGAAAAGAAAATTCgg
aaaggaaaaaaataaacaaaaaattattgaacattaaatttctttacGAC
AACAGCATGGGAATTGAAATGGAAATTATTCGAAATTATTATACATTTAC
GTTGGAAAGAATTGCTCGAAATATAAATGCAAATCTTTTGATCGGTTCTT
ATAACAGAAGATATCTTATAGCTGAGGAGAATGtggtttttcaattttat
gatCGTAACCGACGATTATCTGAAACAGATTGTAAAACGATAAAAAGACA
TAAATGGTTTGTATATAGACATTCAGAGCGAAGGATGAAACCGTCTTGTT
TCGGgataaaaatgaagactttAACAAGTACATTAGACCTTTATGAGttt
ataaacaaagatttgtgtcaaaaaaagtaaaagtctTGCAAAGTTTTTAT
AATACTCAAACGGTATAGAAAAGATTCCAACCACGACTATGACAATTATG
CCTGCGGTTTTCTAGGTTTtcctgctcatcctctagcgaaaatgTTTCCA
ATAGGAGTTATATGTTTTCGAGACTGTGTTGGCTTTTTATGATCTGGTTC
CCGATGTAGAAATCTTCTTCAGTTATGTTAAgtctctgaaggtcgggaaa
atctTGAACAGCGTTAAGAATTTTACACTTTGGGAGGCCTGAACCCCTTC
CCTCGCTTTCAGGGATTATCGGATCTTTTAAAGTAGCTTTGTGTTGATTC
ATCACTTTaaaggccgctacccactcagcattttatggtcggcgaaGAAG
GCGCACGGCTTAATAAtgcataaattacataaatcaagccttcaaaggct
gtcgctttgagcgcaacaagagttgaaacttttcaacttttttcgctGAG
CTGTGCAGCTTtcttattgttcttttttaattagACAATATTACTtaata
ttttgttgttgtttttttactaAGTTAGATCAGAGTTTACACTTATTGTA
AAATCTAGATTTTTAGTACCCAGCTCTAAATAAATATAGttaaataaatc
aaataaaatagaTATTCTCTGTCTTCCTGAGTCTTCTAGTTCCCATTTGT
C Run BLAST on NCBI protein sequence of TCONS_00028873-protein >TCONS_00028873-protein ID=TCONS_00028873-protein|Name=TCONS_00028873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MNFKIFLVSFAFLCCTWMSCSNADLFQVRDFKMLECSEQRNITLIINNLS
RRNLYRLTSLLDDVIENEACYAVYVYQKDYDNSIRLRKGNDTQLEMFFDA
DDYPYIESIEPYKTLRFLNQKLMDENASKQTLVYMTSMTYYNSDETEQYK
LLKRLQNERSWDIIIQCGYGGKNTCPLDFWMPMQRIFPKVPNSFFIYPYD
WLNFVEIIKNPKYDPYEFTYHTIRSRQDFFNQTCLKNVKTLYVVMKTVTT
FYFPMAAAILRKENSERKKINKKLLNIKFLYDNSMGIEMEIIRNYYTFTL
ERIARNINANLLIGSYNRRYLIAEENVVFQFYDRNRRLSETDCKTIKRHK
WFVYRHSERRMKPSCFGIKMKTLTSTLDLYEFINKDLCQKK Run BLAST on NCBI transcript from alignment at sc0000708:176523..178423 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028873 ID=TCONS_00028873|Name=TCONS_00028873|organism=Clytia hemisphaerica|type=transcript|length=1901bp|location=Sequence derived from alignment at sc0000708:176523..178423 (Clytia hemisphaerica)
GACAAATGGGAACTAGAAGACTCAGGAAGACAGAGAATAtctattttatt
tgatttatttaaCTATATTTATTTAGAGCTGGGTACTAAAAATCTAGATT
TTACAATAAGTGTAAACTCTGATCTAACTtagtaaaaaaacaacaacaaa
atattaAGTAATATTGTctaattaaaaaagaacaataagaAAGCTGCACA
GCTCagcgaaaaaagttgaaaagtttcaactcttgttgcgctcaaagcga
cagcctttgaaggcttgatttatgtaatttatgcaTTATTAAGCCGTGCG
CCTTCttcgccgaccataaaatgctgagtgggtagcggcctttAAAGTGA
TGAATCAACACAAAGCTACTTTAAAAGATCCGATAATCCCTGAAAGCGAG
GGAAGGGGTTCAGGCCTCCCAAAGTGTAAAATTCTTAACGCTGTTCAaga
ttttcccgaccttcagagacTTAACATAACTGAAGAAGATTTCTACATCG
GGAACCAGATCATAAAAAGCCAACACAGTCTCGAAAACATATAACTCCTA
TTGGAAAcattttcgctagaggatgagcaggaAAACCTAGAAAACCGCAG
GCATAATTGTCATAGTCGTGGTTGGAATCTTTTCTATACCGTTTGAGTAT
TATAAAAACTTTGCAagacttttactttttttgacacaaatctttgttta
taaaCTCATAAAGGTCTAATGTACTTGTTaaagtcttcatttttatcCCG
AAACAAGACGGTTTCATCCTTCGCTCTGAATGTCTATATACAAACCATTT
ATGTCTTTTTATCGTTTTACAATCTGTTTCAGATAATCGTCGGTTACGat
cataaaattgaaaaaccaCATTCTCCTCAGCTATAAGATATCTTCTGTTA
TAAGAACCGATCAAAAGATTTGCATTTATATTTCGAGCAATTCTTTCCAA
CGTAAATGTATAATAATTTCGAATAATTTCCATTTCAATTCCCATGCTGT
TGTCgtaaagaaatttaatgttcaataattttttgtttatttttttcctt
tccGAATTTTCTTTTCGTAAGATAGCAGCAGCCATTGGAAAATAAAATGT
TGTTACTGTTTTCATTACAACATATAGTGTCTTTACATTTTTTAAGCAGG
TTTGATTAAAGAAGTCTTGCCTTGAGCGTATGGTGTGATACGTAAACTCA
TAAGGATCATATTTtgggttttttataatttctacAAAGTTTAACCAATC
GTAGGGgtagatgaaaaatgaattagGGACTTTCGGAAAAATTCGTTGCA
TTGGCATCCAAAAGTCTAATGGACAAGTATTCTTTCCTCCATAACCACAT
TGGATAATGATATCCCAGGAGCGTTCATTCTGAAGTCTCTTTAAAAGCTT
ATACTGTTCAGTTTCATCGGAATTATAATATGTCATAGATGTCATATAAA
CAAGTGTTTGTTTTGACGCGTTTTCGTCCATCAGCTTCTGATTTAAAAAT
CTTAAGGTCTTGTATGGTTCTATACTTTCTATATACGGATAATCATCAGC
ATCAAAAAACATCTCCAGTTGAGTGTCATTTCCCTTCCGAAGTCGAATGG
AATTATCGTAATCCTTCTGATAAACGTATACAGCATAACAGGCCTCGTTT
TCAATCACATCATCAAGAAGAGAAGTTAATCGATACAAATTTCTCCTTGA
TAAATTATTGATAATTAAAGTGATGTTTCTTTGTTCAGAGCATTCCAGCA
TCTTGAAATCTCTTACTTGAAACAAATCTGCATTAGAGCAAGACATCCAT
GTACAACATAGAAATGCGAACGAAActagaaatattttaaaattcatatt
tctttataacTCGGACCTCTCTTCGCGATCAACTTTTACGAATGTCTCAA
T Coding sequence (CDS) from alignment at sc0000708:176523..178423 >TCONS_00028873 ID=TCONS_00028873|Name=TCONS_00028873|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at sc0000708:176523..178423 (Clytia hemisphaerica)
ttactttttttgacacaaatctttgtttataaaCTCATAAAGGTCTAATG
TACTTGTTaaagtcttcatttttatcCCGAAACAAGACGGTTTCATCCTT
CGCTCTGAATGTCTATATACAAACCATTTATGTCTTTTTATCGTTTTACA
ATCTGTTTCAGATAATCGTCGGTTACGatcataaaattgaaaaaccaCAT
TCTCCTCAGCTATAAGATATCTTCTGTTATAAGAACCGATCAAAAGATTT
GCATTTATATTTCGAGCAATTCTTTCCAACGTAAATGTATAATAATTTCG
AATAATTTCCATTTCAATTCCCATGCTGTTGTCgtaaagaaatttaatgt
tcaataattttttgtttatttttttcctttccGAATTTTCTTTTCGTAAG
ATAGCAGCAGCCATTGGAAAATAAAATGTTGTTACTGTTTTCATTACAAC
ATATAGTGTCTTTACATTTTTTAAGCAGGTTTGATTAAAGAAGTCTTGCC
TTGAGCGTATGGTGTGATACGTAAACTCATAAGGATCATATTTtgggttt
tttataatttctacAAAGTTTAACCAATCGTAGGGgtagatgaaaaatga
attagGGACTTTCGGAAAAATTCGTTGCATTGGCATCCAAAAGTCTAATG
GACAAGTATTCTTTCCTCCATAACCACATTGGATAATGATATCCCAGGAG
CGTTCATTCTGAAGTCTCTTTAAAAGCTTATACTGTTCAGTTTCATCGGA
ATTATAATATGTCATAGATGTCATATAAACAAGTGTTTGTTTTGACGCGT
TTTCGTCCATCAGCTTCTGATTTAAAAATCTTAAGGTCTTGTATGGTTCT
ATACTTTCTATATACGGATAATCATCAGCATCAAAAAACATCTCCAGTTG
AGTGTCATTTCCCTTCCGAAGTCGAATGGAATTATCGTAATCCTTCTGAT
AAACGTATACAGCATAACAGGCCTCGTTTTCAATCACATCATCAAGAAGA
GAAGTTAATCGATACAAATTTCTCCTTGATAAATTATTGATAATTAAAGT
GATGTTTCTTTGTTCAGAGCATTCCAGCATCTTGAAATCTCTTACTTGAA
ACAAATCTGCATTAGAGCAAGACATCCATGTACAACATAGAAATGCGAAC
GAAActagaaatattttaaaattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028873-exon-sc0000708-1491911889:176523..178423 | TCONS_00028873-exon-sc0000708-1491911889:176523..178423 | Clytia hemisphaerica | exon |
| TCONS_00028873-exon-sc0000708-1510915933:176523..178423 | TCONS_00028873-exon-sc0000708-1510915933:176523..178423 | Clytia hemisphaerica | exon |
| TCONS_00028873-exon-sc0000708-1575043694:176523..178423 | TCONS_00028873-exon-sc0000708-1575043694:176523..178423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:176523..178423 . |
Blast
The following BLAST results are available for this feature:
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