TCONS_00028881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028881
Unique NameTCONS_00028881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028881 ID=TCONS_00028881|Name=TCONS_00028881|organism=Clytia hemisphaerica|type=transcript|length=1421bp
CGTCAACGAGTATTTGAACTAAAAAGGTTCataaattacaataaaaaata
tCTAGTAAAGAAGCTGGACCAATCgggaagaaaataaatatttcctaCTT
TATTGTTTATTATGGTTTCTCCAACTTCTTTAAAGTCAATTTCAAGCATC
TCAAAATATGGATTAATTTTCGGGTCATTGCAAGTCCTTCGCTATGAATC
AGTTCGTGTTTCACGTCGTAAATATGAGCTTTTAATTGACCCTTGTCGCG
TGATTGTAGCCGTATTTTCCCTCGCATTCGAATAGAAGTTTTTAAGAACT
CACTGTTCAAAGAAGGCCTTACATTTCTGACCATCTTTCCACAAAAAGGA
CAAGGCTTTTTCTCAGGTTGTTTTCTCGACCAATACGtcatttttggaga
attttCAAGATTAATATCATTTTCCTCTGAGTCAATAATTATATCATTAT
TCTTATCGGTTACTGAGTCTACAATTACGTCATCCTTTGATTCAGTCATT
ACGTCATCAATGGTAGGTATTTCCATTTCGACCGTTTCGCACAGTTCAAC
AGTATTTACGTCATTTTTCGAATGATCGATTACGTCATCAATCATCGTAC
CTTCACTTTTAGAATCGATAATTTCAACTTCGTTCATCGCAGATTCGGTT
ATTTCTTCTTCGATTGATTTATTCATCGTCTCATTATCCGATGATTCAAT
TGTTCTATCATTTTCcaatatgacgtcatttttctcaCTAACAGTTACGT
CATCTTTCATTTCGATTACGTCACCATCTGTATATTCTGTTGATGCATTC
TTTCCAGTTTCGTTACTATCCAAAGTCTTCGGATCAGTCATCTCTTCTTC
TGTGGTCAAAACATTCGATGATTCTACTTGACAATCCGTCTCGATGTCCA
TAGGTGTTTCTGCCTCGATGTCCCTAGGTGTTTCTGTCTCGATGTCCCTA
GGTGTTTCTGTCTCGATGTCCCTAGGTGTTTCAGTCTCGATGTCCCTAGA
TTTTTCAGTCTCGATGTCCCTAGATGTTTCAGTCTCGGTGTCCCTAGATG
TTTCAGTCTCGATGTCCCTAGATGTTTCTGTTTCGGTGTCCCTAGATGTT
TCAGTCTCGATGTCCCTAGATGTTTCTGTTTCGGTGTCCCTggatgtttt
tggttgttttgaaagtatttcAAGCTGAAATGATTTCTCCTGTTCAGTGA
CAGATTCTTCGTTTCCCTGTTCACTAGTATATGAGTGAGTAGGATTTATT
TCTTCATCTTGGTTAGAGACCTCGTTAGATTCTTCGTCAAACTTTCGATC
AGAAGATATGGAGACTTTGTCTTCGTGTTTTAGTTCTGTTGGCTTCTTTT
CTGCTTCGTCGTCATCATTATCGTTCCCTTGAAGACGTATTTTCGAAAGC
GTGGAGGGCGATAATGGTGCT
Run BLAST on NCBI

transcript from alignment at sc0000714:87821..89337+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028881 ID=TCONS_00028881|Name=TCONS_00028881|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at sc0000714:87821..89337+ (Clytia hemisphaerica)
CGTCAACGAGTATTTGAACTAAAAAGGTTCataaattacaataaaaaata
tCTAGTAAAGAAGCTGGACCAATCgggaagaaaataaatatttcctaCTT
TATTGTTTATTATGGTTTCTCCAACTTCTTTAAAGTCAATTTCAAGCATC
TCAAAATATGGATTAATTTTCGGGTCATTGCAAGTCCTTCGCTATGAATC
AGTTCGTGTTTCACGTCGTAAATATGAGCTTTTAATTGACCCTTGTCGCG
TGATTGTAGCCGTATTTTCCCTCGCATTCGAATAGAAGTTTTTAAGAACT
CACTGTTCAAAGAAGGCCTTACATTTCTGACCATCTTTCCACAAAAAGGA
CAAGGCTTTTTCTCAGGTTGTTTTCTCGACCAATACGtcatttttggaga
attttCAAGATTAATATCATTTTCCTCTGAGTCAATAATTATATCATTAT
TCTTATCGGTTACTGAGTCTACAATTACGTCATCCTTTGATTCAGTCATT
ACGTCATCAATGGTAGGTATTTCCATTTCGACCGTTTCGCACAGTTCAAC
AGTATTTACGTCATTTTTCGAATGATCGATTACGTCATCAATCATCGTAC
CTTCACTTTTAGAATCGATAATTTCAACTTCGTTCATCGCAGATTCGGTT
ATTTCTTCTTCGATTGATTTATTCATCGTCTCATTATCCGATGATTCAAT
TGTTCTATCATTTTCcaatatgacgtcatttttctcaCTAACAGTTACGT
CATCTTTCATTTCGATTACGTCACCATCTGTATATTCTGTTGATGCATTC
TTTCCAGTTTCGTTACTATCCAAAGTCTTCGGATCAGTCATCTCTTCTTC
TGTGGTCAAAACATTCGATGATTCTACTTGACAATCCGTCTCGATGTCCA
TAGGTGTTTCTGCCTCGATGTCCCTAGGTGTTTCTATCTCGATGTCCCTA
GGTGTTTCTGTCTCGATGTCCCTAGATGTTTCAGTCTCGGTGTCCCTAGA
TGTTTCTATCTCGATATCCCTAGGTGTTTCTGTCTCGATGTCCCTAGGTG
TTTCTGTCTCGATGTCCCTAGGTGTTTCAGTCTCGATGTCCCTAGATTTT
TCAGTCTCGATGTCCCTAGATGTTTCAGTCTCGGTGTCCCTAGATGTTTC
AGTCTCGATGTCCCTAGATGTTTCTGTTTCGGTGTCCCTAGATGTTTCAG
TCTCGATGTCCCTAGATGTTTCTGTTTCGGTGTCCCTggatgtttttggt
tgttttgaaagtatttcAAGCTGAAATGATTTCTCCTGTTCAGTGACAGA
TTCTTCGTTTCCCTGTTCACTAGTATATGAGTGAGTAGGATTTATTTCTT
CATCTTGGTTAGAGACCTCGTTAGATTCTTCGTCAAACTTTCGATCAGAA
GATATGGAGACTTTGTCTTCGTGTTTTAGTTCTGTTGGCTTCTTTTCTGC
TTCGTCGTCATCATTATCGTTCCCTTGAAGACGTATTTTCGAAAGCGTGG
AGGGCGATAATGGTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016396XLOC_016396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028881-exon-sc0000714-1491911889:87821..88747TCONS_00028881-exon-sc0000714-1491911889:87821..88747Clytia hemisphaericaexon
TCONS_00028881-exon-sc0000714-1510915933:87821..88747TCONS_00028881-exon-sc0000714-1510915933:87821..88747Clytia hemisphaericaexon
TCONS_00028881-exon-sc0000714-1575043694:87821..88747TCONS_00028881-exon-sc0000714-1575043694:87821..88747Clytia hemisphaericaexon
TCONS_00028881-exon-sc0000714-1491911889:88844..89337TCONS_00028881-exon-sc0000714-1491911889:88844..89337Clytia hemisphaericaexon
TCONS_00028881-exon-sc0000714-1510915933:88844..89337TCONS_00028881-exon-sc0000714-1510915933:88844..89337Clytia hemisphaericaexon
TCONS_00028881-exon-sc0000714-1575043694:88844..89337TCONS_00028881-exon-sc0000714-1575043694:88844..89337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:87821..89337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.370112	0.105843	1.66915	2.58229	0	0	0	0.44758	0	0	0.319271	0	0	0.0942578	0	0	1.5411e-06	0	1.48125e-09	0.00237956	5.18162	4.5031	0	0.0831862	0	4.68253e-10
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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