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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028884 ID=TCONS_00028884|Name=TCONS_00028884|organism=Clytia hemisphaerica|type=transcript|length=1013bp
CTTTCCATTGCATTGCACTTGCACTTTTACCGAAGGAGTCAAAGCTAGCT
GTTCGAGAGGTGCGAGTGCTTGGTATCTCATTGGAACTCCATTGATACAT
CTGAAAGATATCCAAGGTCTTCAACACCTTCCTGACATCGTCTCGAAAAG
TCTTATCGATAACACTGTAGATAACGCCATTAACCGAACAATGTAAATAA
CGAACATATGTGAACGCTACCAACACATTCCAATTCATGTGGTGAATAAC
TAATTTCCAGTTATAAGCGTGGAGGTAAAGCCAGAGATAGGTAGGAAACC
AGAGAACGAAAAGAGCGACCGAGATAGCGTACAGAATGTGGATCTTCAGG
CGGATGGTTTTGGTGACTGGATGTGGAGCTCTGGTGATTGAGATCTTGGG
CTTCTTGGTGACCGAGGATCGACTTGTCTTCCAATTGTCTTGATGAAATA
AGATATGTAGAAATTTGACGACTTTGCTTTGAGAATTATTTGCTTCTTTT
ACATGAAATTCTTCTTGGGTGAAAGGGGTGGCTTCTTTGATGATTGGTGA
AATCAACATTCTTTCCTCTGAGAGGCCTTGGTAAGAGCATCTTCTTCCTT
CGCTGTAGTTTGAAATATCGCTTGGATCCAAGGAGCATTGTCTTGAAGCC
TTTCTTGACGTACCAATATCCCCAGTGCTGCAAGTCGATGTTTGTCTTGT
AGCTTTTCTCGGACGTTCACTATTTGTGCTTCCTGTCGAATGATGTCTGG
TTGCTTTCTTCTGAGCAATACCACCACCTGACTCGGATGGTTTGCAGAAT
GTTGGGTTATTGAAAAGCTGGGACGAACCATCGCATATAAGGGACATATT
CCGAACATGCGTTCTAATGAAATTGTAAAGCTTGTAGTGAAAGAAAATGG
TAGAAAGAAGAGGAATTACCAAAGTAACAATGAGGCGAAAATTGAGGTTC
ACTTTTTTCCACTGGCCGTTCAAAGGCATTGCACTGCATGTGTCCGGTAT
TGAGGTATAAGAG Run BLAST on NCBI transcript from alignment at sc0000714:148667..149748+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028884 ID=TCONS_00028884|Name=TCONS_00028884|organism=Clytia hemisphaerica|type=transcript|length=1082bp|location=Sequence derived from alignment at sc0000714:148667..149748+ (Clytia hemisphaerica)
CTTTCCATTGCATTGCACTTGCACTTTTACCGAAGGAGTCAAAGCTAGCT
GTTCGAGAGGTGCGAGTGCTTGGTATCTCATTGGAACTCCATTGATACAT
CTGAAAGATATCCAAGGTCTTCAACACCTTCCTGACATCGTCTCGAAAAG
TCTTATCGATAACACTGTAGATAACGCCATTAACCGAACAATGTAAATAA
CGAACATATGTGAACGCTACCAACACATTCCAATTCATGTNGATGCCATT
GACTGAACAATGCAAATAACGAACATATGTGAACGCCACCAGCACATTCC
AATTCATGTGGTGAATAACTAATTTCCAGTTATAAGCGTGGAGGTAAAGC
CAGAGATAGGTAGGAAACCAGAGAACGAAAAGAGCGACCGAGATAGCGTA
CAGAATGTGGATCTTCAGGCGGATGGTTTTGGTGACTGGATGTGGAGCTC
TGGTGATTGAGATCTTGGGCTTCTTGGTGACCGAGGATCGACTTGTCTTC
CAATTGTCTTGATGAAATAAGATATGTAGAAATTTGACGACTTTGCTTTG
AGAATTATTTGCTTCTTTTACATGAAATTCTTCTTGGGTGAAAGGGGTGG
CTTCTTTGATGATTGGTGAAATCAACATTCTTTCCTCTGAGAGGCCTTGG
TAAGAGCATCTTCTTCCTTCGCTGTAGTTTGAAATATCGCTTGGATCCAA
GGAGCATTGTCTTGAAGCCTTTCTTGACGTACCAATATCCCCAGTGCTGC
AAGTCGATGTTTGTCTTGTAGCTTTTCTCGGACGTTCACTATTTGTGCTT
CCTGTCGAATGATGTCTGGTTGCTTTCTTCTGAGCAATACCACCACCTGA
CTCGGATGGTTTGCAGAATGTTGGGTTATTGAAAAGCTGGGACGAACCAT
CGCATATAAGGGACATATTCCGAACATGCGTTCTAATGAAATTGTAAAGC
TTGTAGTGAAAGAAAATGGTAGAAAGAAGAGGAATTACCAAAGTAACAAT
GAGGCGAAAATTGAGGTTCACTTTTTTCCACTGGCCGTTCAAAGGCATTG
CACTGCATGTGTCCGGTATTGAGGTATAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028884-exon-sc0000714-1491911889:148667..148892 | TCONS_00028884-exon-sc0000714-1491911889:148667..148892 | Clytia hemisphaerica | exon |
| TCONS_00028884-exon-sc0000714-1510915933:148667..148892 | TCONS_00028884-exon-sc0000714-1510915933:148667..148892 | Clytia hemisphaerica | exon |
| TCONS_00028884-exon-sc0000714-1575043694:148667..148892 | TCONS_00028884-exon-sc0000714-1575043694:148667..148892 | Clytia hemisphaerica | exon |
| TCONS_00028884-exon-sc0000714-1491911889:148962..149748 | TCONS_00028884-exon-sc0000714-1491911889:148962..149748 | Clytia hemisphaerica | exon |
| TCONS_00028884-exon-sc0000714-1510915933:148962..149748 | TCONS_00028884-exon-sc0000714-1510915933:148962..149748 | Clytia hemisphaerica | exon |
| TCONS_00028884-exon-sc0000714-1575043694:148962..149748 | TCONS_00028884-exon-sc0000714-1575043694:148962..149748 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000714 | supercontig | sc0000714:148667..149748 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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