TCONS_00028895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028895
Unique NameTCONS_00028895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028895 ID=TCONS_00028895|Name=TCONS_00028895|organism=Clytia hemisphaerica|type=transcript|length=437bp
AAAAAGAAAGTTACGGTATTTTaagataaacaaacatttttgaaCCTAAA
ATGATTGACAAAATTACAgattatataatataaaaacaaataaatcacAG
ATCGATGATTTTTAAAGGGTGTCCACATTTTATGTACATGATACAAAGTC
TTTATTGACCGAAAAATTGCGAGTGTCATTTCATTCTTTCCCTCTCAAAG
ATGAAGTCTGGTTTTGTCAACTTGACATTAGATCTATCGACCGCGAATGC
ACAGTATCAAAGAATAATGTTGTTTTCTCTCACTCATTTTATTTGTTTCT
AAAGGTCCTCATCTTTTCCCCTTGTTGTCTTTCCCTTTACTGTTTTGGTT
GCGTGGTGGCGTAATAGGGCGCCCAGTGTTCAAACCACTATATTGGTATT
TCGCTTTCTTCTCTGCCGGTTTCAGGATCTGTAAAGA
Run BLAST on NCBI

transcript from alignment at sc0000714:134682..135175-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028895 ID=TCONS_00028895|Name=TCONS_00028895|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at sc0000714:134682..135175- (Clytia hemisphaerica)
AAAAAGAAAGTTACGGTATTTTAAGATAAACAAACATTTTTGAACCTAAA
ATGATTGACAAAATTACAGATTATATAATATAAAAACAAATAAATCACAG
ATCGATGATTTTTAAAGGGTGTCCACATTTTATGTACATGATACAAAGTC
TTTATTGACCGAAAAATTGCGAGTGTCATTTCATTCTTTCCCTCTCAAAG
ATGAAGTCTGGTTTTGTCAACTTGACATTACTTTAGATCTATCGACTGGG
CNCAAAGATGAAGTCTGGTTTTGTCAACTTGACATTAGATCTATCGACCG
CGAATGCACAGTATCAAAGAATAATGTTGTTTTCTCTCACTCATTTTATT
TGTTTCTAAAGGTCCTCATCTTTTCCCCTTGTTGTCTTTCCCTTTACTGT
TTTGGTTGCGTGGTGGCGTAATAGGGCGCCCAGTGTTCAAACCACTATAT
TGGTATTTCGCTTTCTTCTCTGCCGGTTTCAGGATCTGTAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016404XLOC_016404Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028895-exon-sc0000714-1575043694:134950..135175TCONS_00028895-exon-sc0000714-1575043694:134950..135175Clytia hemisphaericaexon
TCONS_00028895-exon-sc0000714-1575043694:134682..134892TCONS_00028895-exon-sc0000714-1575043694:134682..134892Clytia hemisphaericaexon
TCONS_00028895-exon-sc0000714-1510915933:134950..135175TCONS_00028895-exon-sc0000714-1510915933:134950..135175Clytia hemisphaericaexon
TCONS_00028895-exon-sc0000714-1510915933:134682..134892TCONS_00028895-exon-sc0000714-1510915933:134682..134892Clytia hemisphaericaexon
TCONS_00028895-exon-sc0000714-1491911889:134950..135175TCONS_00028895-exon-sc0000714-1491911889:134950..135175Clytia hemisphaericaexon
TCONS_00028895-exon-sc0000714-1491911889:134682..134892TCONS_00028895-exon-sc0000714-1491911889:134682..134892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:134682..135175 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
127.316	101.934	319.225	333.184	139.305	76.8165	100.802	90.6865	47.1091	62.1772	59.0476	42.4303	52.771	43.4275	49.8462	52.0608	83.5063	79.9562	74.8902	97.3289	81.6471	87.3286	142.53	124.447	15.8372	46.0594	139.831	124.827	108.335	103.554
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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