TCONS_00028913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028913
Unique NameTCONS_00028913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028913 ID=TCONS_00028913|Name=TCONS_00028913|organism=Clytia hemisphaerica|type=transcript|length=1532bp
ACGTCAATGAGATGGCATCCTGTTATGATACGTTGGGCTTTGAGCCTATA
TCTACGAAGTCCAGgTACATACGAACAACTACGAAGTAGTGGATTCTTGC
AACTACCATGTAAATCTACTTTGAATCTGTATACTGGTTTTACTGATATC
AGATCGTCCTACAACCCAGATATCATTCGTAAACATGCAACTGATTTAAA
GGTTTCAGAACTTAAACCTTTCGAACGAAGCTGTGGAATCTTATTTGAcg
aaatgaaaatcaaatcaGGTCTTGTTTTCAGTCGAAATACTGGACAACTG
GTTGGATTCACAGAGCTTGGTCAGATTAGTGAAGAGATATCTGTTTTGGA
GAGAAGTTTGGATGGTGCTCTAAAAGAAAAACCCCTAGCAACACACATGC
TTTGCATCATGATCAGAGGTCAATGGTCAGCATTTATCATGGAATCAGAT
TCGTTTTGTCTATGAGCTTGATCTTAATAAGAATTCCCTGTCACCTGGAT
TGCGGAAACTACCACGATTAACTAATGATCACATTCGACTTGGTCCTCGA
ACACGCATGAGAGTTAATCTTGCTGCTCAGGTACTCAGCACCAGCATGGC
AAATGCTTTAAAGAAACAAGGATTTAGCACCACTAAGGAGCTTGAAAAAT
TCATCAGAATGATTGATAAATTCTTTGACATCATGAATGTTCAAGATACT
TATTCAGGCACGTCTACCAACAAACCATGGCTTATCGAATTTAGACTTGA
TGAAATTGAAATAGACGAAACTATCACACACAACACTCAGACTGATGCTA
CAGCTACAACACACAATCAAACTGCTGCTACAGCCACAACACACAATCAG
ACTGATGTTACAGTCACAACACACAATCGGGCTGCTTCAGTCATAACGCA
CGATCAGACTACTGCTACAATCACAACACACAATCAGACTGCTGCTACAG
TCACAACACACGATCAGACTGCTGCTTCAGTCACAACACACAGTCAGACT
ACTGCTACAATCACAACACACAATCAGAATGCTGCTACAGTCACAGCAAA
CAACACTCAGACTGTTGCTACATCCAATCAGACTGCTGACGATAAAGCTA
AAAAGGAGAACAGATTGAAGTGGCTCGAAGACGTTTTCTTGAAGTATTTC
GAAGACTgggaaaaagaaacaaaagcctTGCCGTTTCCACCAAAGGAACA
AGCAAAACATTGTATCAGTACACAGACACTCAATGGATTAAGAATAACAG
ttCGTTCATTCGTTGAGTTAGTTCCATTGCTACTACGTATGGATGGTGTC
GAATATTTCCTGTCCGATAAGATCAATCAGGACCCCGTTGAAGAACATTT
CTCCAAGCACAGGGCTCGACTAGGTGGATCAGACAACCCAACTGTGGAAC
AGTACATGttaacagaacgaaaattggtgGTTGCGAAATCAGAACTCATA
CTTTCGTTAAGAGGTAATTTTCGTGGTAGAAAACGAAAGCAGATAACCAT
AGATATCAACGATGAAAGAACTCTTcctaaaa
Run BLAST on NCBI

transcript from alignment at sc0000715:142071..145967+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028913 ID=TCONS_00028913|Name=TCONS_00028913|organism=Clytia hemisphaerica|type=transcript|length=3897bp|location=Sequence derived from alignment at sc0000715:142071..145967+ (Clytia hemisphaerica)
ACGTCAATGAGATGGCATCCTGTTATGATACGTTGGGCTTTGAGCCTATA
TCTACGAAGTCCAGGTATACATACGAAAATTTGTTATTTGGTATTATATT
TACTGATATAATATTTTAAATCACAATTCGGAGCAATTTTATAAATCTGA
TGCAATTTGATATGTCACTGACCCAGTGTTGGTCTGCTTCTTTTTAAAAG
GGGCTTATCTCCTCTACCATCAAAAGTTCTAAATAAAGTCAAGATTTCTC
ATCCTTTTAGGgccaaaattatgaaaaattggatttgaaatgaaaaaaat
tgaataagtttggaacaTTTGACAGTTTTGTCAAATCTGCTAAAATTAGT
ACAAAAAAGGTAGAATATCTAGCAGTTTGTTTGTGTCCATGTACTTCTTT
GTCCCTAATTGTAGGGGGGGGGTCACTTggcaatttttcagatttttcac
tcCCACTCACCACACactcttcttttttataagaaccatgaaATTTGAGT
TGAGGCTGAAGCTGTTCTTAAAACCTTTAGCACTTTCAGCcttctgttct
tatttttttaggtattttaggTTATATTTTCTATCTTTCTGTATTTGTGA
CCCTGCCCCATTTTGTGGATTTTTTCCCAGAACTCTCAAAGTCAGTTTCT
CATTTTTATACGaccatttcaaattttatggTGTTTACGATTTTTCAATT
ATTATACCCCTGACTATCCAGATGCCTTGGGTGAggggaaaaaaaattgt
taaccATATTTTATATTTATGATGCTGCAGTAATATGATTTTAGGAATTC
TTTAAGAAGGAAAATTCTATGGCATGGGCAACTAATACTAATAGTCTTGG
AGCACTCGAGAAAAATTACCCAAATTTCCCCCTCCAGATCTACAAGTAGG
GTTAGATACCAGACCAAACCAGGCAAATAATTTaatcattttactttttt
caggTACATACGAACAACTACGAAGTAGTGGATTCTTGCAACTACCATGT
AAATCTACTTTGAATCTGTATACTGGTTTTACTGATATCAGATCGTCCTA
CAACCCAGATATCATTCGTAAACATGCAACTGATTTAAAGGTTTCAGAAC
TTAAACCTTTCGAACGAAGCTGTGGAATCTTATTTGAcgaaatgaaaatc
aaatcaGGTCTTGTTTTCAGTCGAAATACTGGACAACTGGTTGGATTCAC
AGAGCTTGGTCAGATTAGTGAAGAGATATCTGTTTTGGAGAGAAGTTTGG
ATGGTGCTCTAAAAGAAAAACCCCTAGCAACACACATGCTTTGCATCATG
ATCAGAGGTTACTTTAAGCATTTCAACCTGCCAATAGGTCTTTACCCAAC
TAACAGTGTTGATTCTGAACAGCTTTTCACAATTATCTGGGAGGCAGTGC
ATGTAACCGAAGCTATTGGCTTGAAAGTCCACTCCTTTGTCAGTGATGGT
GCTTCAGCCAATCGAAAGTTTTACGAGATGCATAAGATGGATGATGGGTC
AAACGTTTCGAAAGAAGGTCTCGTGTACTGGGCCTGGAACAGATACGATC
TCGGCAGGAAGATATATTTCTTCAGTGACCCTCCACATCTTCTCAAAACA
CTGAGAAATAATCTTGAGAATTCAGGTGGTAACAAAGGAACAAGAAATCT
TATGGTAAGTGAAAGCTCAATCTGCCAAGCTGGCCTGAAGATTATAATAC
TGGTCTTGTCAAGATTATGACAAATTTTGATccatgaaagttttttttgg
tgcaattgattttatttttcaaataaaattttttcctaattttgaaAACC
TcttcattgaaattttttgataattttttcattaaatctACTCAtgatta
tctttccaatgaaTATTAAATCACAatcaaaaattcagaaatataAACCc
tcttcatttttgaaattttttagtatttttttttgcatataaTAATCCAC
TCacgattatctttccaacaagtattaaatcaattcaaattatattaaaa
gttacagccttttctGTTTCCACTATCAGTTATTTTGAGACATACTTCAG
TTTTGATATAATATGTTTCTTTATAGAAGATCAAGAAGATCTCAAGATGA
GTTATTGTATTTTGCATTTCAGGTCAATGGTCAGCATTTATCATGGAATC
AGATTCGTTTTGTCTATGAGCTTGATCTTAATAAGAATTCCCTGTCACCT
GGATTGCGGAAACTACCACGATTAACTAATGATCACATTCGACTTGGTCC
TCGAACACGCATGAGAGTTAATCTTGCTGCTCAGGTGCCTATTTTCTACT
ACATTTATTTTTAAGTTTGCACATTTCGCCATTTTCAgagaaagattttg
aattttatattttgaaaattatgatgtccaaaaaattgcaaaaataaatt
tgctgAAAAGTTTTGCACTGACCTCCCCTCCTTGTTGGACCCTTTATTCT
GGTcttattttagtttttagttaATGTTCTTTCAATAATTATAATTGTGA
GCTTTGTAATTTATTATTGAAGCTTCTTTTTATGTTCTCTTTTCAGGTAC
TCAGCACCAGCATGGCAAATGCTTTAAAGAAACAAGGATTTAGCACCACT
AAGGAGCTTGAAAAATTCATCAGAATGATTGATAAATTCTTTGACATCAT
GAATGTTCAAGATACTTATTCAGGCACGTCTACCAACAAACCATGGCTTA
TCGAATTTAGACTTGATGAAATTGAAATAGACGAAACTATCACACACAAC
ACTCAGACTGATGCTACAGCTACAACACACAATCAAACTGCTGCTACAGC
CACAACACACAATCAGACTGATGTTACAGTCACAACACACAATCGGGCTG
CTTCAGTCATAACGCACGATCAGACTACTGCTACAATCACAACACACAAT
CAGACTGCTGCTACAGTCACAACACACGATCAGACTGCTGCTTCAGTCAC
AACACACAGTCAGACTACTGCTACAATCACAACACACAATCAGAATGCTG
CTACAGTCACAGCAAACAACACTCAGACTGTTGCTACATCCAATCAGACT
GCTGACGATAAAGCTAAAAAGGAGAACAGATTGAAGGTTTGTTTAAATTT
GATTATCGtaagttttacaaaaatttcctTATAAACGTCACTTTTTGTTG
TTCGTTTCATTAAATTGGCTACCACTTCTCAGTTAAATCAGATCGAACTT
AGATATGTGATAAACTGTATTGattatgaaattgaaaaaacaacaaatgt
tTGGATGACTAAAgttttgataccattttctTATTTAGTGGCTCGAAGAC
GTTTTCTTGAAGTATTTCGAAGACTgggaaaaagaaacaaaagcctTGCC
GTTTCCACCAAAGGAACAAGCAAAACATTGTATCAGTACACAGACACTCA
ATGGATTAAGAATAACAGGTATATTTTCAATGTCTAACTCATAATTCTTC
CATATGGGTCTTAATTTTCACCCACCTATCCTTTTTTCTGATTAATTTCT
GTTAATACAGAGTTCAATGCATTACTCTCAGACATGTTATATCAGATGTA
ATCTTGGGTCAAAAGTCTTCTAGGGTCTATTTATGTTGTAACATCTTgtg
atattattttttcagttCGTTCATTCGTTGAGTTAGTTCCATTGCTACTA
CGTATGGATGGTGTCGAATATTTCCTGTCCGATAAGATCAATCAGGACCC
CGTTGAAGAACATTTCTCCAAGCACAGGGCTCGACTAGGTGGATCAGACA
ACCCAACTGTGGAACAGTACATGttaacagaacgaaaattggtgGTTGCG
AAATCAGAACTCATACTTTCGTTAAGAGGTAATTTTCGTGGTAGAAAACG
AAAGCAGATAACCATAGATATCAACGATGAAAGAACTCTTcctaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016419XLOC_016419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028913-exon-sc0000715-1491911889:142071..142134TCONS_00028913-exon-sc0000715-1491911889:142071..142134Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1510915933:142071..142134TCONS_00028913-exon-sc0000715-1510915933:142071..142134Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1575043694:142071..142134TCONS_00028913-exon-sc0000715-1575043694:142071..142134Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1491911889:143024..143377TCONS_00028913-exon-sc0000715-1491911889:143024..143377Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1510915933:143024..143377TCONS_00028913-exon-sc0000715-1510915933:143024..143377Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1575043694:143024..143377TCONS_00028913-exon-sc0000715-1575043694:143024..143377Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1491911889:144193..144354TCONS_00028913-exon-sc0000715-1491911889:144193..144354Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1510915933:144193..144354TCONS_00028913-exon-sc0000715-1510915933:144193..144354Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1575043694:144193..144354TCONS_00028913-exon-sc0000715-1575043694:144193..144354Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1491911889:144617..145156TCONS_00028913-exon-sc0000715-1491911889:144617..145156Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1510915933:144617..145156TCONS_00028913-exon-sc0000715-1510915933:144617..145156Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1575043694:144617..145156TCONS_00028913-exon-sc0000715-1575043694:144617..145156Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1491911889:145359..145488TCONS_00028913-exon-sc0000715-1491911889:145359..145488Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1510915933:145359..145488TCONS_00028913-exon-sc0000715-1510915933:145359..145488Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1575043694:145359..145488TCONS_00028913-exon-sc0000715-1575043694:145359..145488Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1491911889:145686..145967TCONS_00028913-exon-sc0000715-1491911889:145686..145967Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1510915933:145686..145967TCONS_00028913-exon-sc0000715-1510915933:145686..145967Clytia hemisphaericaexon
TCONS_00028913-exon-sc0000715-1575043694:145686..145967TCONS_00028913-exon-sc0000715-1575043694:145686..145967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000715supercontigsc0000715:142071..145967 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197152	0.506852	0.206969	0	0.322532	0.15253	0	0.259052	0.0971869	0.187368	0.222263	0.239416	0.0926127	0.118135	0.331983	0.366338	0.28488	0.285554	0	0.233581	0.157417	0.26397	0	0.0832771	0	0.10618	0.430683	0.430038	0.0889035	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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