TCONS_00028943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028943
Unique NameTCONS_00028943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028943 ID=TCONS_00028943|Name=TCONS_00028943|organism=Clytia hemisphaerica|type=transcript|length=307bp
gtaaaacagtTATTTAACTCGAAAGATAAAAATCCACACCCAGCGTGTAA
AATTTACGAAGGCACGTGTTCTTGTGGATTGAATTATATCGGCGAAACCC
AACGTAATGTTGAAACCAGGTGGTCagaacaaaataattttgagcACAAC
TCTGAACCTGCAAAGTATCTTAAAAACCACCCTGACCACGAATTCTTatg
gaaaataattttaaacgCTCCCACGAATACCCGATTAAGAAAAAATCTGG
AAGCCGCATTAATTGCCCTTAAGAGACCACTTCTTAATGACCAACTCGAC
TCTGCTC
Run BLAST on NCBI

protein sequence of TCONS_00028943-protein

>TCONS_00028943-protein ID=TCONS_00028943-protein|Name=TCONS_00028943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
VKQLFNSKDKNPHPACKIYEGTCSCGLNYIGETQRNVETRWSEQNNFEHN
SEPAKYLKNHPDHEFLWKIILNAPTNTRLRKNLEAALIALKRPLLNDQLD
SA
Run BLAST on NCBI

transcript from alignment at sc0000715:159122..159428

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028943 ID=TCONS_00028943|Name=TCONS_00028943|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at sc0000715:159122..159428 (Clytia hemisphaerica)
GAGCAGAGTCGAGTTGGTCATTAAGAAGTGGTCTCTTAAGGGCAATTAAT
GCGGCTTCCAGATTTTTTCTTAATCGGGTATTCGTGGGAGcgtttaaaat
tattttccatAAGAATTCGTGGTCAGGGTGGTTTTTAAGATACTTTGCAG
GTTCAGAGTTGTgctcaaaattattttgttctGACCACCTGGTTTCAACA
TTACGTTGGGTTTCGCCGATATAATTCAATCCACAAGAACACGTGCCTTC
GTAAATTTTACACGCTGGGTGTGGATTTTTATCTTTCGAGTTAAATAact
gttttac

Coding sequence (CDS) from alignment at sc0000715:159122..159428

>TCONS_00028943 ID=TCONS_00028943|Name=TCONS_00028943|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000715:159122..159428 (Clytia hemisphaerica)
AGCAGAGTCGAGTTGGTCATTAAGAAGTGGTCTCTTAAGGGCAATTAATG
CGGCTTCCAGATTTTTTCTTAATCGGGTATTCGTGGGAGcgtttaaaatt
attttccatAAGAATTCGTGGTCAGGGTGGTTTTTAAGATACTTTGCAGG
TTCAGAGTTGTgctcaaaattattttgttctGACCACCTGGTTTCAACAT
TACGTTGGGTTTCGCCGATATAATTCAATCCACAAGAACACGTGCCTTCG
TAAATTTTACACGCTGGGTGTGGATTTTTATCTTTCGAGTTAAATAactg
ttttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016435XLOC_016435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028943-exon-sc0000715-1491911889:159122..159428TCONS_00028943-exon-sc0000715-1491911889:159122..159428Clytia hemisphaericaexon
TCONS_00028943-exon-sc0000715-1510915933:159122..159428TCONS_00028943-exon-sc0000715-1510915933:159122..159428Clytia hemisphaericaexon
TCONS_00028943-exon-sc0000715-1575043694:159122..159428TCONS_00028943-exon-sc0000715-1575043694:159122..159428Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028943-proteinTCONS_00028943-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000715supercontigsc0000715:159122..159428 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.70561	1.22892	1.60308	0.975796	2.69881	1.86057	1.30638	0.304876	0.377638	2.19927	1.44571	5.05296	4.74778	1.43807	1.10233	0.271597	0.278378	1.53838	6.4392	0.699604	0.511864	0.82965	0	1.94221	2.08005	1.48827	1.05888	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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