TCONS_00028952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028952
Unique NameTCONS_00028952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028952 ID=TCONS_00028952|Name=TCONS_00028952|organism=Clytia hemisphaerica|type=transcript|length=912bp
AACAAGAGCAGCCATTTgctaggaaAACTTCACGACCTATGTGGCTATGT
ATCATTTGTATCGGgtatcaaaataccaaaaaatcctGAAAAGTCAAAAG
CACCCTACTTCGAGATGTATGTTGCACTTGAGAACAAGGAAGAAAGAATT
GCCTCATGGAACATTGATGATCAACCAACCCTTTTAAACAAACTGCATCA
AGGAATCAACATAACTGGattatcaaaatcatcagaTGGTCAAGGTTTTT
CCTTCATTAGTCAAACTAAGTTTATGGATAAAAGGCCAAATTTTGCATAT
GTACAAGTTAATGTCGAACCAACACCTTTAAATGAAGCATTGCAACAGCC
TCTTTACTCCAGAGTTACTCTAGAGGCTTACATACATGACTTTGAACAAG
TTTAATGGTGTGCGTGTGTTCAAAGCATCTGACCTTACAAGTTTCGCTCC
TTCTATCAATGAGATTGCGGCTCCAATGGCAGAAACAAACATCTTCATTG
GTCAGGTCCACAGTGTTGTGATGTCATCATTGGCCACATTCTACAAATGT
CCTCACTGTGGGGAAACATTAGATAGTAATGGCTCCTCAGCAATGTGCCC
TAATACAAACTGTGGCGTAGGTCTCTCCACGAATGCAATTGTTAGTgtta
aagaaatcaaatttaCTGTTCGCAGTGATAGCAATATCGtaagaaatttc
aaatgtaGCCATCAACTTGTTGAAGCAATTGATCAATCAATCAGTCGAAA
ACAAAAtggtatttttccaaaaatttattgacactaaagTTGTAGTAACT
TTTGAAGAAGCAAGTGGTGATGTTGTATCAATTGAAGAGACCTTCTTCTA
ATTTAATTTACCAGATTTTATTTACCAGATTTTATTTGATTCCTGATTTG
ATTTATTCCAGC
Run BLAST on NCBI

transcript from alignment at sc0000716:125066..126901-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028952 ID=TCONS_00028952|Name=TCONS_00028952|organism=Clytia hemisphaerica|type=transcript|length=1836bp|location=Sequence derived from alignment at sc0000716:125066..126901- (Clytia hemisphaerica)
AACAAGAGCAGCCATTTGCTAGGAAGTATGAAATATCTGTTTTGGGGTCC
TTTTTTCCTGGAAAAATATCAACTGTTCTAGGAAAAAATGGGACTCCTAG
AAAATGTATACTTGTTCAATCAATAAAAATAATACGGTGCTGCTGGAAAA
GTATAACAGCTTTTCTCTGAGAAAGTTATGTTGCCCCTGGAAATATTAGT
GTTTTTGCAACTTAGCTCCTCAATTTTTGAACAGATTGTCTGCTGGAAAA
TTGTACGTGTTTTTCATTAAAATGTGCTCCTGGATTTTTAGAACAGAGGT
ATTAGGCTTAGATGCCCTCCGGATCATTGCATACCATTTAGAAAATGGAT
GGCAAATGTATATAAATAATAAAGTTTCGAACACTTTGACATAGGCACCA
CCAAATTTTTTATCTTGACATGATTTTTCATATTGTTTGAAGCAAATAGT
ACGCTGTATATGAAATTGATATAGTCAAAAGTTCATTCAAACAAAAACAT
CTCAAAAAAGCAAGAAAACCAACTTATTTAAAGGATTTTTTCCAGGAGCA
ATTTGATCAATGAGCAGAGATGTTTATTTTCATTTAAATTTTCTTTGTTT
GCTTTAGAACTTCACGACCTATGTGGCTATGTATCATTTGTATCGGGTAT
CAAAATACCAAAAAATCCTGAAAAGTCAAAAGCACCCTACTTCGAGATGT
ATGTTGCACTTGAGAACAAGGAAGAAAGAATTGCCTCATGGAACATTGAT
GATCAACCAACCCTTTTAAACAAACTGCATCAAGGAATCAACATAACTGG
ATTATCAAAATCATCAGATGGTCAAGGTTTTTCCTTCATTAGTCAAACTA
AGTTTATGGATAAAAGGCCAAATTTTGCATATGTACAAGTTAATGTCGAA
CCAACACCTTTAAATGAAGCATTGCAACAGCCTCTTTACTCCAGAGTTAC
TCTAGAGGTACGTATCACTAAATTGCACCAAGGTGGTATTTCCTATGANA
TCATCAGATGGTCAAGGTTTTTCCTTCATTAGTCAAACCAAGTTTATGGA
TAAAAGGCCAAATTTTGCATATGTACAAGTTAATGTCGAACCAACACCTT
TAAATGAAGCATTGCAACAGCCTCTTTACTCCAGAGTTACTCTAGAGGTA
CGTATCACTAAATTGCACCATGGTGGTATTTCCTACGATGGGCTTGCATC
CAGGTCAGCTGAAGTTATTGATAACAGTGTCAACCAGCCTCGCGAAATAA
CACTTTACGGTAATCTTACAACAATGATTGAATTAAATAGTGCCTACAGG
CTTACATACATGACTTTGAACAAGTTTAATGGTGTGCGTGTGTTCAAAGC
ATCTGACCTTACAAGTTTCGCTCCTTCTATCAATGAGATTGCGGCTCCAA
TGGCAGAAACAAACATCTTCATTGGTCAGGTCCACAGTGTTGTGATGTCA
TCATTGGCCACATTCTACAAATGTCCTCACTGTGGGGAAACATTAGATAG
TAATGGCTCCTCAGCAATGTGCCCTAATACAAACTGTGGCGTAGGTCTCT
CCACGAATGCAATTGTTAGTGTTAAAGAAATCAAATTTACTGTTCGCAGT
GATAGCAATATCGTAAGAAATTTCAAATGTAGCCATCAACTTGTTGAAGC
AATTGATCAATCAATCAGTCGAAAACAAAATGGTATTTTTCCAAAAATTT
ATTGACACTAAAGTTGTAGTAACTTTTGAAGAAGCAAGTGGTGATGTTGT
ATCAATTGAAGAGACCTTCTTCTAATTTAATTTACCAGATTTTATTTACC
AGATTTTATTTGATTCCTGATTTGATTTATTCCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016443XLOC_016443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028952-exon-sc0000716-1575043694:126877..126901TCONS_00028952-exon-sc0000716-1575043694:126877..126901Clytia hemisphaericaexon
TCONS_00028952-exon-sc0000716-1575043694:125945..126294TCONS_00028952-exon-sc0000716-1575043694:125945..126294Clytia hemisphaericaexon
TCONS_00028952-exon-sc0000716-1575043694:125066..125602TCONS_00028952-exon-sc0000716-1575043694:125066..125602Clytia hemisphaericaexon
TCONS_00028952-exon-sc0000716-1510915933:126877..126901TCONS_00028952-exon-sc0000716-1510915933:126877..126901Clytia hemisphaericaexon
TCONS_00028952-exon-sc0000716-1510915933:125945..126294TCONS_00028952-exon-sc0000716-1510915933:125945..126294Clytia hemisphaericaexon
TCONS_00028952-exon-sc0000716-1510915933:125066..125602TCONS_00028952-exon-sc0000716-1510915933:125066..125602Clytia hemisphaericaexon
TCONS_00028952-exon-sc0000716-1491911889:126877..126901TCONS_00028952-exon-sc0000716-1491911889:126877..126901Clytia hemisphaericaexon
TCONS_00028952-exon-sc0000716-1491911889:125945..126294TCONS_00028952-exon-sc0000716-1491911889:125945..126294Clytia hemisphaericaexon
TCONS_00028952-exon-sc0000716-1491911889:125066..125602TCONS_00028952-exon-sc0000716-1491911889:125066..125602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000716supercontigsc0000716:125066..126901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00238318	0	0	0.223612	0	0	0	0	0	0	1.61304	0	0.0581136	0.391966	0.032716	1.24449e-07	0.0811366	0	0.17911	0.297949	0	0	0	0.0526064	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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