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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028956 ID=TCONS_00028956|Name=TCONS_00028956|organism=Clytia hemisphaerica|type=transcript|length=1299bp
ATGAAGCTTTTCAGACGATGCAAATGGAAATGGCTTGCCAAAACCGACCT
TTTCATACCATCAAGGTTACCAACGTTAGAACGAATAGCAAttccaaaat
aattttgaagCTTATCAATAACACGTTTTGTCAATATTCCTCTACCACCC
AGACCTTTCACGCGTTTCTTCAATTCTCGAAGACGATATCCAATGCGTTT
TTGAACGTGGCCTATACATTCtcgttttttaacttttaatccAGGATACG
TGTTCTCAACTGTAGGGTGGCTTTTCGAGTCCCCATCTCCATAAAATTCT
GTGTATCCAAGTTTGTATTCTTTAACAGATCTTTCAAACATAGTCTTAGC
ACCCTCACATTCCACGGCTCCGGAAGATCCAACATTATTTATTATGCAAA
TGTGGGTACTTTTCCAGGCTTCGTAAGCCTTAGAATCAGTCTTTTTGAGC
TTTTCCTTGAGAGCACATTGTTGACAGTGTTTGGTTTGGGGATGCGTATC
AATAACTTTTCCACAGTTGTTACACCATTTAATGAAGAATATCCACGGCG
CTGCCAGGATGCGTCGATCGACACACCAATATCAACAGTTTCATCCACAG
GAGCGTCTTTACGGGCTTCGTTGATTGCATCAACCATAGTTTTCTTTGCA
ACAGTCTTGGCTGCATTCTTTAGCCTTaatttttcgagagctttcaaaaa
atatacaacaggtctctattttctgaagctaaaattttcattaatttttg
accctataatttttgcctgagaccgtcatatttgtccgaaaagttatttt
gattcccctaccccttagccttccaaaaatgtataacaagtgctttgact
aaaaaaagcgagcgattttacaaatttttcccTACGACTTTTAGCAAGTG
ANataacaagtgctttgactaaaaaaagcgagcgattttacaaatttttc
cttACGACTTTTAGCAAgtgaaaattttggatttttaacaggCAAAAATG
GCCATTCCGTTTTAACtgcaatgaaataattttgaaaaaacggcACATCA
TACATGGTATTGCGTTTATGTTGGCTCCAAATTGCAAATCTTATTGGAAC
CGTGCAAGATGCGTTGTGGATAAGTGCCTcgcgttttctttttaaactgt
ATCTGGTTGGAATTTCCTCGATTACTGAATCAGCTAAAATCAGAATATCT
CTCCACATTGACAAAATCTCTAACTGTTTGGTCGATTGCTTTGTTGATTG
TTTGGTAATGGAGGTTGACTCCTGAATTAAATCTTTGACTCTGTTAAAC Run BLAST on NCBI protein sequence of TCONS_00028956-protein >TCONS_00028956-protein ID=TCONS_00028956-protein|Name=TCONS_00028956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
FNRVKDLIQESTSITKQSTKQSTKQLEILSMWRDILILADSVIEEIPTRY
SLKRKREALIHNASCTVPIRFAIWSQHKRNTMYDVPFFQNYFIAVKTEWP
FLPVKNPKFSLAKSRKEKFVKSLAFFSQSTCYXTC Run BLAST on NCBI transcript from alignment at sc0000716:773..2071 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028956 ID=TCONS_00028956|Name=TCONS_00028956|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at sc0000716:773..2071 (Clytia hemisphaerica)
GTTTAACAGAGTCAAAGATTTAATTCAGGAGTCAACCTCCATTACCAAAC
AATCAACAAAGCAATCGACCAAACAGTTAGAGATTTTGTCAATGTGGAGA
GATATTCTGATTTTAGCTGATTCAGTAATCGAGGAAATTCCAACCAGATa
cagtttaaaaagaaaacgcgAGGCACTTATCCACAACGCATCTTGCACGG
TTCCAATAAGATTTGCAATTTGGAGCCAACATAAACGCAATACCATGTAT
GATGTgccgttttttcaaaattatttcattgcaGTTAAAACGGAATGGCC
ATTTTTGcctgttaaaaatccaaaattttcacTTGCTAAAAGTCGTaagg
aaaaatttgtaaaatcgctcgctttttttagtcaaagcacttgttatNTC
ACTTGCTAAAAGTCGTAgggaaaaatttgtaaaatcgctcgcttttttta
gtcaaagcacttgttatacatttttggaaggctaaggggtaggggaatca
aaataacttttcggacaaatatgacggtctcaggcaaaaattatagggtc
aaaaattaatgaaaattttagcttcagaaaatagagacctgttgtatatt
ttttgaaagctctcgaaaaattAAGGCTAAAGAATGCAGCCAAGACTGTT
GCAAAGAAAACTATGGTTGATGCAATCAACGAAGCCCGTAAAGACGCTCC
TGTGGATGAAACTGTTGATATTGGTGTGTCGATCGACGCATCCTGGCAGC
GCCGTGGATATTCTTCATTAAATGGTGTAACAACTGTGGAAAAGTTATTG
ATACGCATCCCCAAACCAAACACTGTCAACAATGTGCTCTCAAGGAAAAG
CTCAAAAAGACTGATTCTAAGGCTTACGAAGCCTGGAAAAGTACCCACAT
TTGCATAATAAATAATGTTGGATCTTCCGGAGCCGTGGAATGTGAGGGTG
CTAAGACTATGTTTGAAAGATCTGTTAAAGAATACAAACTTGGATACACA
GAATTTTATGGAGATGGGGACTCGAAAAGCCACCCTACAGTTGAGAACAC
GTATCCTggattaaaagttaaaaaacgaGAATGTATAGGCCACGTTCAAA
AACGCATTGGATATCGTCTTCGAGAATTGAAGAAACGCGTGAAAGGTCTG
GGTGGTAGAGGAATATTGACAAAACGTGTTATTGATAAGcttcaaaatta
ttttggaaTTGCTATTCGTTCTAACGTTGGTAACCTTGATGGTATGAAAA
GGTCGGTTTTGGCAAGCCATTTCCATTTGCATCGTCTGAAAAGCTTCAT Coding sequence (CDS) from alignment at sc0000716:773..2071 >TCONS_00028956 ID=TCONS_00028956|Name=TCONS_00028956|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000716:773..2071 (Clytia hemisphaerica)
TTTAACAGAGTCAAAGATTTAATTCAGGAGTCAACCTCCATTACCAAACA
ATCAACAAAGCAATCGACCAAACAGTTAGAGATTTTGTCAATGTGGAGAG
ATATTCTGATTTTAGCTGATTCAGTAATCGAGGAAATTCCAACCAGATac
agtttaaaaagaaaacgcgAGGCACTTATCCACAACGCATCTTGCACGGT
TCCAATAAGATTTGCAATTTGGAGCCAACATAAACGCAATACCATGTATG
ATGTgccgttttttcaaaattatttcattgcaGTTAAAACGGAATGGCCA
TTTTTGcctgttaaaaatccaaaattttcacTTGCTAAAAGTCGTaagga
aaaatttgtaaaatcgctcgctttttttagtcaaagcacttgttatNTCA
CTTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028956-exon-sc0000716-1491911889:773..2071 | TCONS_00028956-exon-sc0000716-1491911889:773..2071 | Clytia hemisphaerica | exon |
| TCONS_00028956-exon-sc0000716-1510915933:773..2071 | TCONS_00028956-exon-sc0000716-1510915933:773..2071 | Clytia hemisphaerica | exon |
| TCONS_00028956-exon-sc0000716-1575043694:773..2071 | TCONS_00028956-exon-sc0000716-1575043694:773..2071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000716 | supercontig | sc0000716:773..2071 . |
Blast
The following BLAST results are available for this feature:
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