TCONS_00028975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028975
Unique NameTCONS_00028975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028975 ID=TCONS_00028975|Name=TCONS_00028975|organism=Clytia hemisphaerica|type=transcript|length=422bp
GAAGATCAGTGGAAGCAAGAAAAAGGAGAAACAAAAGGAAAAATGTAATC
GATAAGTCAAAGAAGAAGCAATCTCATGATCAACTTGAACAAAGACTTTG
CGCTGCAGAATCTTCCAATATGGagcttaaaaagaaaaataacattttaa
agAAAGTCGTAAAACCATCCAAGCTACCGTTAGCATCacaaaaacgtgta
ttcaatgGACCTTTGAACTACTCAATCAATCTTTTGAGATCATTCACTAA
CAAAGCATTGTCAATCACTCGGACGCTCAAAGAAGATGTTCCAGTGTTTG
cattctttgccacggaaagtcatgtgacatcttttNCCATCCATACCGGA
ACGTTGTGGTGGCGGTAGTCCGAAAAATAACTGTCCAATCTTGTCCAAAT
ACTGTccgaaaaaatattaaat
Run BLAST on NCBI

protein sequence of TCONS_00028975-protein

>TCONS_00028975-protein ID=TCONS_00028975-protein|Name=TCONS_00028975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
RSVEARKRRNKRKNVIDKSKKKQSHDQLEQRLCAAESSNMELKKKNNILK
KVVKPSKLPLASQKRVFNGPLNYSINLLRSFTNKALSITRTLKEDVPVFA
FFATESHVTSFXIHTGTLWWR
Run BLAST on NCBI

transcript from alignment at sc0000717:12293..12714

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028975 ID=TCONS_00028975|Name=TCONS_00028975|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0000717:12293..12714 (Clytia hemisphaerica)
atttaatattttttcggACAGTATTTGGACAAGATTGGACAGTTATTTTT
CGGACTACCGCCACCACAACGTTCCGGTATGGATGGNaaaagatgtcaca
tgactttccgtggcaaagaatgCAAACACTGGAACATCTTCTTTGAGCGT
CCGAGTGATTGACAATGCTTTGTTAGTGAATGATCTCAAAAGATTGATTG
AGTAGTTCAAAGGTCcattgaatacacgtttttgtGATGCTAACGGTAGC
TTGGATGGTTTTACGACTTTctttaaaatgttatttttctttttaagctC
CATATTGGAAGATTCTGCAGCGCAAAGTCTTTGTTCAAGTTGATCATGAG
ATTGCTTCTTCTTTGACTTATCGATTACATTTTTCCTTTTGTTTCTCCTT
TTTCTTGCTTCCACTGATCTTC

Coding sequence (CDS) from alignment at sc0000717:12293..12714

>TCONS_00028975 ID=TCONS_00028975|Name=TCONS_00028975|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000717:12293..12714 (Clytia hemisphaerica)
CTACCGCCACCACAACGTTCCGGTATGGATGGNaaaagatgtcacatgac
tttccgtggcaaagaatgCAAACACTGGAACATCTTCTTTGAGCGTCCGA
GTGATTGACAATGCTTTGTTAGTGAATGATCTCAAAAGATTGATTGAGTA
GTTCAAAGGTCcattgaatacacgtttttgtGATGCTAACGGTAGCTTGG
ATGGTTTTACGACTTTctttaaaatgttatttttctttttaagctCCATA
TTGGAAGATTCTGCAGCGCAAAGTCTTTGTTCAAGTTGATCATGAGATTG
CTTCTTCTTTGACTTATCGATTACATTTTTCCTTTTGTTTCTCCTTTTTC
TTGCTTCCACTGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016463XLOC_016463Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028975-proteinTCONS_00028975-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028975-exon-sc0000717-1491911889:12293..12714TCONS_00028975-exon-sc0000717-1491911889:12293..12714Clytia hemisphaericaexon
TCONS_00028975-exon-sc0000717-1510915933:12293..12714TCONS_00028975-exon-sc0000717-1510915933:12293..12714Clytia hemisphaericaexon
TCONS_00028975-exon-sc0000717-1575043694:12293..12714TCONS_00028975-exon-sc0000717-1575043694:12293..12714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000717supercontigsc0000717:12293..12714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.574019	1.67708	0.657015	0.446164	15.0494	10.8273	3.85456	4.4105	7.81025	7.82891	7.38096	4.0825	2.18797	1.55536	1.61945	0.98469	1.5834	1.53826	0.400414	0.197062	1.45962	1.23072	0.691712	0.732964	0.719425	1.43642	0.551298	0	0	0.635514
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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