TCONS_00028994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028994
Unique NameTCONS_00028994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028994 ID=TCONS_00028994|Name=TCONS_00028994|organism=Clytia hemisphaerica|type=transcript|length=217bp
CAAAAGATACAAGGGAGGGGAGCATACAAAAAGTTCATGGCAAATGGTCG
AAATGGGGCTCATGGGGAAAGTGCAGTTCATCTTGTGGTGGTGGTCGGCA
AACTAGAACAAGAACATGTACCAATCCTGCACCTCGAAACGGTGGATTGG
ATTGTACAGACTTTGATACTGATATTCAGAAATGCAATACTAACATATGT
CCAAGTAAGAAATGCGA
Run BLAST on NCBI

transcript from alignment at sc0000719:4976..5783-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028994 ID=TCONS_00028994|Name=TCONS_00028994|organism=Clytia hemisphaerica|type=transcript|length=808bp|location=Sequence derived from alignment at sc0000719:4976..5783- (Clytia hemisphaerica)
CAAAAGATACAAGGGAGGGGAGCATACAAAAAGGTAAACAGGGAGTAAAA
GCATCTATTATGATATATTTTCTTTTTAGCATCTGGCGTCAAGGCTAAAA
ATGGGGCACTGAGAAGAGTACAAGCTTTTCCAAGTTTTTACCATTAATAT
CTAGACAATATATACATGAAGGAAATCAGAAAGAAATTTATGCTCACCTT
CTTCTCAAGTCAAGATAGGAATGGTTTGGATTTCCATGTGTTTCAGCTTC
TTTCTCCACCCTTCTTCTTCTCCTTATGGGAAAGACAATAAATTCAGCAC
ACATGAGAGAAACTCAGGCAGTCCTCTGAGCTTTACACACAATCATTTAT
TTTATGAAACGCTGGTAAAAACAAACCCCTACCATATTTTGATATTTTGA
TAGAAGGATACTATTTTTTTCCCCGCTAAACCTTCGCGACGATTTTTAGT
CACGTGACTGAAGAGCCTAGTCATAATGTGCAGCACGAATAAAGAAAACA
TTAACATCGAAAATGGAAGAAGAAACGGAAAAAGGCCGTTTTAAAAAATA
TTCCCCTATAGTAGGGAAATATTTAATTATAACGTAAATATATAGCAGTA
TTTTTTTATTTCATAAATTTTCAGTTCATGGCAAATGGTCGAAATGGGGC
TCATGGGGAAAGTGCAGTTCATCTTGTGGTGGTGGTCGGCAAACTAGAAC
AAGAACATGTACCAATCCTGCACCTCGAAACGGTGGATTGGATTGTACAG
ACTTTGATACTGATATTCAGAAATGCAATACTAACATATGTCCAAGTAAG
AAATGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016478XLOC_016478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028994-exon-sc0000719-1575043694:5751..5783TCONS_00028994-exon-sc0000719-1575043694:5751..5783Clytia hemisphaericaexon
TCONS_00028994-exon-sc0000719-1575043694:4976..5159TCONS_00028994-exon-sc0000719-1575043694:4976..5159Clytia hemisphaericaexon
TCONS_00028994-exon-sc0000719-1510915933:5751..5783TCONS_00028994-exon-sc0000719-1510915933:5751..5783Clytia hemisphaericaexon
TCONS_00028994-exon-sc0000719-1510915933:4976..5159TCONS_00028994-exon-sc0000719-1510915933:4976..5159Clytia hemisphaericaexon
TCONS_00028994-exon-sc0000719-1491911889:5751..5783TCONS_00028994-exon-sc0000719-1491911889:5751..5783Clytia hemisphaericaexon
TCONS_00028994-exon-sc0000719-1491911889:4976..5159TCONS_00028994-exon-sc0000719-1491911889:4976..5159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000719supercontigsc0000719:4976..5783 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2554	6.31877	13.2061	12.9201	24.4672	11.0482	31.6568	21.8376	8.73657	9.46895	11.8167	16.3988	13.7903	7.16069	19.1329	11.056	16.5387	13.9602	9.64336	15.8574	11.277	3.66701	8.91546	2.70182	54.2647	55.8807	17.77	9.48233	14.384	13.1895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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