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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028995 ID=TCONS_00028995|Name=TCONS_00028995|organism=Clytia hemisphaerica|type=transcript|length=1596bp
CCAGGCTTCAGGTACCCCCAATAAAATTAGGTACCCCCAAcgatttaggt
acccccaaagtTGTTTGGATTCTTAGGTAGCCCCCAGGATTTGGTACCCC
CattaaattatgttttttagGTACCCCTTTTATTACGTAGCCGATtagaa
gaatttcttttttttgcattctattCTCTGTAATGATAATTTTGTGTcat
ttgttgaaagtattcaaaGAACACACAAGAGTAAGACATGTCTTTTCCCA
CAAATCCATGTGAAGAAACAAATATCCAAAATAGGTGAAAATTATTAATA
TGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATACATAT
TAAACTAGGCTATGTACATTTTATATAGTTGaccttagtattttgttctc
aGACCTTTCTTTTGAATCACCAATCTCAATCTTTTGGGCATAGAGTTGAT
CAGATTGTTTACGGTTTGCACAGGGAACTccataaaagttttttcaatcc
TGGTGGTAAACTCATCATAACTTGCCTTagttatgttttgatttttggcg
tCTTCGGCAAGTTTTTTGCGAATAAGGTGGAACAAGTTCTCAATTATATT
CAGATCAGGTGATCTAACGGGAATCTTCACAAGCCCATAATCTTTACTTT
ACCAAGTGTCCCTACACAAGGCGGCGTTTTGTTTTGGACATCCATCCATT
AAGAAGGTACGTTGTCCATCCTTGGCCCCACAGTTGTCAAAAGCTTTGGG
AAATTCCTGtctaattaaatttgaaaagtttttaccATTGATGGTCCACG
TGTGGGGGTGACACATTACAACACCTTTTCCATAGGAGACAGCAACAAAG
AACTTTGCAACTTTTCCTCCACTCCCCTCTTTCCTTCCTTCTGTTGTTAT
TTTGAGCCCCTCGTCTGGTCTTCGCCATGTCATAGATGTTACAGCCCGAG
CTTCCCCGGCAGGGTTTGATTTGTGTGAGAAGCCCACACCGTCCAAGTAA
AACCATACTTCATTCTGCCAATAAGACAACGGTAGACGGATTTTCTCTTT
CGCCCATGTAACGCGCAGCTTCTTATTCTTAACACTTAGAAGGCCCTTCT
TGCGGGACTGCAAATATCTATAATTGTTCCTGCGTAAGCACCGAGCAATA
TCCCTTCCATGTATTCCTGCCTGCTGCAATCCAGTCTCTTCCAAAATCTT
TCCTGCCGTGAAAGCAGCACCATCAACACGGAGCTTCAAGAGCGCTCTGA
GGATTATTCGTTCCTTTCGGGCATCTAATTTCTTTGGCCGGCCTGGATTG
TTATGTCGGGCATCCATGGAAGCAGTTGGCTGATCCAATGGTTTTTTTGC
ATGCCGGCATATTGTTCTCGGTGAAACTTTCAATTTATGGAAACGTTGTA
TCAGTTCGGGGCAACTTACACCATGCTCTTGATGGAGGACGGCCTGCTTA
ATTGAATCTCTTGCCGATATCTTCTGATAcgtctttttataatttttcac
gTTCATTACGTTATTtttgtatatgattgttttcaactttttattatcta
aagataaacaaatgagaGTTATAACAGTGAAATGAAAATGTCTATA Run BLAST on NCBI transcript from alignment at sc0000719:137801..139703- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028995 ID=TCONS_00028995|Name=TCONS_00028995|organism=Clytia hemisphaerica|type=transcript|length=1903bp|location=Sequence derived from alignment at sc0000719:137801..139703- (Clytia hemisphaerica)
CCAGGCTTCAGGTACCCCCAATAAAATTAGGTACCCCCAACGATTTAGGT
ACCCCCAAAGTTGTTTGGATTCTTAGGTAGCCCCCAGGATTTGGTACCCC
CATTAAATTATGTTTTTTAGGTACCCCTTTTATTACGTAGCCGATTAGAA
GAATTTCTTTTTTTTGCATTCTATTCTCTGTAATGATAATTTTGTGTCAT
TTGTTGAAAGTATTCAAAGAACACACAAGAGTAAGACATGTCTTTTCCCA
CAAATCCATGTGAAGAAACAAATATCCAAAATAGGTGAAAATTATTAATA
TGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATACATAT
TAAACTAGGCTATGTACATTTTATATAGTTGACCTTAGTATTTTGTTCTC
AGACCTTTCTTTTGAATCACCAATCTCAATCTTTTGGGCATAGAGTTGAT
CAGATTGTTTACGGTTTGCACAGGGAACTCCATAAAAGTTTTTTCAATCC
TGGTGGTAAACTCATCATAACTTGCCTTAGTTATGTTTTGATTTTTGGCG
TCTTCGGCAAGTTTTTTGCGAATAAGGTGGAACAAGTTCTCAATTATATT
CAGATCAGGTGATCTAACGGGAATCTTCACAAGCCCATAATCTTTACTTT
ACCAAGTGTCCCTACACAAGGCGGCGTTTTGTTTTGGACATCCATCCATT
AAGAAGGTACGTTGTCCATCCTTGGCCCCACAGTTGTCAAAAGNTATTCA
AATTGAACCACTCCACGTCCGTGGGCAAACTACAAATTTCTATTTATAAA
AAAAAAACAAAAAAAAATCGTTGAATTTTAATCTCCTTCACTGGGGTTAC
TGTAAAATGTAAAGGACACAAGAAAGAAAAAGTAGTAAAAACGAAGGGTT
TGGTTGAAAATTNACAAGGCGGCGTTTTGTTTTGGACATCCATCCATTAA
GAAGGTACGTTGTCCATCCTTGGCCCCACAGTTGTCAAAAGCTTTGGGAA
ATTCCTGTCTAATTAAATTTGAAAAGTTTTTACCATTGATGGTCCACGTG
TGGGGGTGACACATTACAACACCTTTTCCATAGGAGACAGCAACAAAGAA
CTTTGCAACTTTTCCTCCACTCCCCTCTTTCCTTCCTTCTGTTGTTATTT
TGAGCCCCTCGTCTGGTCTTCGCCATGTCATAGATGTTACAGCCCGAGCT
TCCCCGGCAGGGTTTGATTTGTGTGAGAAGCCCACACCGTCCAAGTAAAA
CCATACTTCATTCTGCCAATAAGACAACGGTAGACGGATTTTCTCTTTCG
CCCATGTAACGCGCAGCTTCTTATTCTTAACACTTAGAAGGCCCTTCTTG
CGGGACTGCAAATATCTATAATTGTTCCTGCGTAAGCACCGAGCAATATC
CCTTCCATGTATTCCTGCCTGCTGCAATCCAGTCTCTTCCAAAATCTTTC
CTGCCGTGAAAGCAGCACCATCAACACGGAGCTTCAAGAGCGCTCTGAGG
NAATCTTTCCTGTCGTGAAAGCAGCACCATCAGCACGGAGCTTCAAGAGT
GCTCTGAGGATTATTCGTTCCTTTCGGGCATCTAATTTCTTTGGCCGGCC
TGGATTGTTATGTCGGGCATCCATGGAAGCAGTTGGCTGATCCAATGGTT
TTTTTGCATGCCGGCATATTGTTCTCGGTGAAACTTTCAATTTATGGAAA
CGTTGTATCAGTTCGGGGCAACTTACACCATGCTCTTGATGGAGGACGGC
CTGCTTAATTGAATCTCTTGCCGATATCTTCTGATACGTCTTTTTATAAT
TTTTCACGTTCATTACGTTATTTTTGTATATGATTGTTTTCAACTTTTTA
TTATCTAAAGATAAACAAATGAGAGTTATAACAGTGAAATGAAAATGTCT
ATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028995-exon-sc0000719-1575043694:139015..139703 | TCONS_00028995-exon-sc0000719-1575043694:139015..139703 | Clytia hemisphaerica | exon |
| TCONS_00028995-exon-sc0000719-1575043694:138205..138766 | TCONS_00028995-exon-sc0000719-1575043694:138205..138766 | Clytia hemisphaerica | exon |
| TCONS_00028995-exon-sc0000719-1575043694:137801..138145 | TCONS_00028995-exon-sc0000719-1575043694:137801..138145 | Clytia hemisphaerica | exon |
| TCONS_00028995-exon-sc0000719-1510915933:139015..139703 | TCONS_00028995-exon-sc0000719-1510915933:139015..139703 | Clytia hemisphaerica | exon |
| TCONS_00028995-exon-sc0000719-1510915933:138205..138766 | TCONS_00028995-exon-sc0000719-1510915933:138205..138766 | Clytia hemisphaerica | exon |
| TCONS_00028995-exon-sc0000719-1510915933:137801..138145 | TCONS_00028995-exon-sc0000719-1510915933:137801..138145 | Clytia hemisphaerica | exon |
| TCONS_00028995-exon-sc0000719-1491911889:139015..139703 | TCONS_00028995-exon-sc0000719-1491911889:139015..139703 | Clytia hemisphaerica | exon |
| TCONS_00028995-exon-sc0000719-1491911889:138205..138766 | TCONS_00028995-exon-sc0000719-1491911889:138205..138766 | Clytia hemisphaerica | exon |
| TCONS_00028995-exon-sc0000719-1491911889:137801..138145 | TCONS_00028995-exon-sc0000719-1491911889:137801..138145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000719 | supercontig | sc0000719:137801..139703 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011991 | WHTH_DNA-bd_dom |
Blast
The following BLAST results are available for this feature:
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