TCONS_00029027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029027
Unique NameTCONS_00029027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029027 ID=TCONS_00029027|Name=TCONS_00029027|organism=Clytia hemisphaerica|type=transcript|length=1365bp
TGCCCTCCAGCCAGCCTCTAGTAATCGCATTTACTTTTTTCACGAAGACC
AATTAAAAACACATTTTCACGGTGTGAAAGCGCTgaaataaaaatggaaa
aaagaagTCGATTATTTGTAGAGTAATTACGGCACGGCGGAGTTTGTTTG
ATTCGGAATGTTGTTTGAATGTTAGATTGACCAATTACgtcatgttttga
ttttcttttttttgatctGCACTGAACCAATTTCACATAAAAATAGCGTT
TAAACATGATGAAGCAGAGTGCTAACTGCTGGTAAACAAATATTTAAAAG
AGTTAACAAGTTCGGcaaaaaataagagaaaaaaaagtcgaaccggggaa
aattttatgaaagttCAGATGAGATTgaagggaaaataagaaacactTTA
TATCAGCGATTGTGAAGGAGCTGCTGTTTTGTTTAAGGTATAGAGAAAAA
GGAAAACGTGTTCGTGAGAAAGgttttttgattgattgaaaatgTCTACG
TTAGCTTCTGTGAGCATCGTGGCACCTACACTTTCAGTACCACGCCAAAA
TAATCAGCGTCGACCTGATTTGTACGCGGTTTATACGGAGAACGGCTTTC
AAAGAAATTCAACTTTCAATCGTAGCACTCGGAGACCCATGAAGACAGAC
AGACGTAAATGTTTTATGTTGGTGTTGGGTGTGTTACAAATCTTACTTGG
ATCGTTATTTCTTTCACTTGGTTTATGGTCTGTCATGATCGTGCGTTCTG
CTCTCTACGCCACTGGGCTCTCACCATTCTTCCTCGCTGTACTTAGTTAT
GTTGGAGGAGGATTGACAGTTTATGGACCTCGAAGTACCAACAATAATTT
AGTCATGCTTGTTATTGGTGTCTCAACCTTTACTTGTTTCCTCTCTTTAT
CATTGGGTTGTTGGATGTTCATCAGTCTAATGCATTCGTCAGCACCCAAC
ATTACTTCATACAAGAGCTTCTTAATGGGTTTGAATGTTTTCTTGATGTT
GGATACAGGAATCATCGCATCAAGCACGTGGACGTTAAAAGAAACTGTTC
GGCGAAGGAGGAATCGAAATAGGCCAACAGATCCACTACGAGATCCACCA
CCGGCTTATTTCCCACCCGGTACCGCCGCAACATCAACCTCATCGTCCAA
TGACACGCCACGGATGGTGTACACTGGTGAAACCGTAACTCAAATCAATA
ATGAATCACCCCCTCCCTATGAACCATGAGTCAATGAAAGATGTATTAAA
GGATATATTGGCTTGAGTGGATCCTGCATTTCTATCAGACATTAAGGACA
AACTATTCTTTCGTATCATTGAAACAATAGCAGAAGGGCAAAGTATTGGA
TGATATGACAAGGGC
Run BLAST on NCBI

transcript from alignment at sc0000720:148691..155435-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029027 ID=TCONS_00029027|Name=TCONS_00029027|organism=Clytia hemisphaerica|type=transcript|length=6745bp|location=Sequence derived from alignment at sc0000720:148691..155435- (Clytia hemisphaerica)
TGCCCTCCAGCCAGCCTCTAGTAATCGCATTTACTTTTTTCACGAAGACC
AATTAAAAACACATTTTCACGGTGTGAAAGCGCTGAAATAAAAATGGAAA
AAAGAAGTCGATTATTTGTAGAGTAATTACGGCACGGCGGAGTTTGTTTG
ATTCGGAATGTTGTTTGAATGTTAGATTGACCAATTACGTCATGTTTTGA
TTTTCTTTTTTTTGATCTGCACTGAACCAATTTCACATAAAAATAGCGTT
TAAACATGATGAAGCAGAGTGCTAACTGCTGGTAAACAAATATTTAAAAG
AGTTAACAAGTTCGGCAAAAAATAAGAGAAAAAAAAGTCGAACCGGGGAA
AATTTTATGAAAGTTCAGATGAGATTGAAGGGAAAATAAGAAACACTTTA
TATCAGCGATTGTGAAGGAGCTGCTGTTTTGTTTAAGGTATAGAGAAAAA
GGAAAACGTGTTCGTGAGAAAGGTTTTTTGATTGATTGAAAATGTCTACG
TTAGCTTCTGTGAGCATCGTGGCACCTACACTTTCAGTACCACGCCAAAA
TAATCAGCGTCGACCTGATTTGTACGCGGTTTATACGGAGAACGGCTTTC
AAAGAAATTCAACTTTCAATCGTAGCACTCGGAGACCGTAAGTAATTTAA
CGGAACTTCTAGTTTATTCTAATGTCATACACGTTTTTTTTTATATAAGG
AACCTTAACTTTGCTCTGAGCCTGGAGTTCCTTATTTTTACAGAAAATTT
CAGCCTCAAAGTTCCTTTTGAGTTCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTCTTATTCTTAGCCTGAGCAGTTCCTTAACAA
TTCCTTATTTTTTGGACTACTTTCAGCCTCGAGTTCCTTATAAACGTGTT
CCTTATAAAAAAAAAACGTGTATGAGAAGGAGTAGAGTTATGGTTGAAGT
AAATAGTGGCTTCCTTAAGTGTGAGCGAATCGAAATAAAACAAACAATCT
GAGGCTTAGAATGCCAGAAGATAAAGAGTTAAAGGTTTTATTTTTACATA
AGTGTTTCCGTTTCATATCAGACATATATTTCATATCAGGACAGTGTCTT
ACTATTGTTATATTATGCTGATATAAGCATGAAATTGTTTTTATTTTCCT
CTTTCTGATCAATCTTGCTTCGCATCTGCGTGTCAATCCAATGTGAAAAA
GCTTTTGAATTTAAATTGATGAGTAAGCAAACGATATCACTCTTATTTAA
AAACAAAATCTTTAATTTTAGAAGAAAACACCCCTGTCTCATAGCCCTGG
TGGAGTTTTTTTTCCACAGTAGGGATAATTCCAAAAAGGATAAAAATTTT
TTGTTCCAGAAGCACAGAAAAGCCAGTAGGGATGGTTTTGGAGTATAATT
TTTAACATTGAATTTTGAATGGGGTTGAAATCAAAGTCATTTTCCCAGCA
GGGCTGAAATTGTAGAATACAGTATTCTCCCAACCGGCGCAGGGAAATTG
TTAAGGTTTCAAAAGTGTTTTTTTACATTTTTTACAATGAATTTCATCGT
TGGTTTCAAAATACTCAGAAATGAGACAAAAAAGTTTAGTTTAAGATCCG
GTACTAAATTTTCGAATGCATTAGCACATAAAAAAATTTTTAAGAAAATT
TGCATCTCATTTTCTCTTTTCAGCATGAAGACAGACAGACGTAAATGTTT
TATGTTGGTGTTGGGTGTGTTACAAATCTTACTTGGATCGTTATTTCTTT
CACTTGGTTTATGGTCTGTCATGATCGTGCGTTCTGCTCTCTACGCCACT
GGGCTCTCACCATTCTTCCTCGCTGTACTTGTAAGTACCTTTACAGGTTT
TTTTTATAAGGAGCCTTAAGTCTTGGCACCGAGCCTCAACTTTCTTATTT
TTCCTGATAATCTCAGCCTCAAAGCTCCTTATATAGTTCCTTATACTGTA
TGCGTTTACCTTATAAAAAAAGACGTGTATATTTTACATTTATCGTACTA
AATAGAAAAACATTTTATACAAATTCCCACTAACATTAAAAAAAGGCTGA
AAACCCATCTATCACTTCACTGCGGAAATCTCGAAAAAGAACTCTTTGTT
CAGCAGCTATCCACTTTATAAGATAAGGGAAATTTATCCAGAATTTCTTG
GCAGAAAAGATACATTTTTGAATCATTTAATTTTACTACTTTGTGACTTT
GGTATAATTAAAAAAGGTAGTAAACTATAGAATCTGAAAACTGAAAAAAG
CTTTGTTAAGAATGATGGTCCTATTTTAAGAAGCCCCTTGGTCCTAAATT
TACCGAAAATAAACAAAATTTCTTGTTTACTTTATTGCCAGAAATAGTAC
AAATCTGAACTGTTTGTTTGTTTTACAGAGTTATGTTGGAGGAGGATTGA
CAGTTTATGGACCTCGAAGTACCAACAATAATTTAGTAAGTCTACTGTAG
CCGACATTCGCCTGTTTTCGTGACTCTATAATATGGAACTTTGTCATTAT
ACTACAGCCACGGTGGAATATTTCCCCAAACGGGGATCAAAATTTCTATT
GAAATCTCAATAGGGATAGAAATTATTGTTCAAAGCTTAAAAAATCCAGT
GGGGATGGTTTCAGATTGTAATTTTTAAACATTGAATTTCGAATGGGGGT
GAAATCAAAGTCAATTTCCCAGTGAGGCTGAAATTGAAGGTTGTTTTTCC
CACCGGGGAAGAAAGGGTGTCATTAGCATCTGAACGGGCGTCTTTAAAAG
TGACCTAAAGGCGAGCTATTCGTCACTATCTTTGATCGTTCACCTTGTTA
AACTTTGAATGTCATCATTTTTTTTTCTCGATAATCTGTGATAAGTGATA
AATACAGTGAAGTCTCCATAACTGGAAGCTTTATAACTCCATGTCTCCTC
AACTCGAACAAAGTTCCTGGTCCCGTCTATTAACAATTCCTTATAAACCT
ACCTCAATGACTTGAAATTACCATAACCCGAACAGATATACGTTTTCCTT
GTAGGTTCAAGTTATAGAAACTGAACTATATCAAGCTTCTCAAAGAATTC
TAGGTGTTCAATCTGTCTTTACCCTTGATTAAACGTTAGTGTTGATTCTC
TACTGAATGAAAACCATGAAAACTAACCATTTGTAATATTTCCTCTTACT
TCATCAGGTCATGCTTGTTATTGGTGTCTCAACCTTTACTTGTTTCCTCT
CTTTATCATTGGGTTGTTGGATGTTCATCAGTCTAATGCATTCGTCAGCA
CCCAACATTACTTCATACAAGAGCTTCTTAATGGGTTTGAATGTTTTCTT
GATGTTGGATACAGGAATCATCGCATCAAGCACGTGGACGTTAAAAGAAA
CTGTTCGGCGAAGGAGGAATCGAAATAGGGTATGATTGCAACTTTATATT
TAAGACAAGAAGCCCGTTAGGCGTGAAGGCCCAGCAAAAGCGAAATTTAC
GCGATTTTCGCGAATTTCGGGATTTCTAAAAATTCCAAAAAATGTTTAAC
AAGATTTCAAATTCCCCCCAGGAAAGGGGTGGCCAAAGAATTTAAATTTC
ACTGCGTCGAGCAAAACAAAATGAAAAATAAGTCGACAAGGATAATTCTC
CCTTTCTTCATTTCTTAGAACAGGGAAGTGAAAAAATAAACGAAACATAA
TGTAGTCAATCAAAAATGAATTGAATGTTGAAAGCTCGAAACTCTCCACC
CGAAGGTAAACAATCAAATTCAAAATATCATCAAATTCAACTTCCATAAA
AAACAACATCATTGCATGAAAAAAGTTCCAATCTTGTTCAAATTTACACA
TGAGCTGCATTTTAGTCTCCATTTACCATGTCCATATTCCATTTAAAATT
AGTATTTATAATAATTCTGTGTCGAGTTTGAAAAATCAAGCCGCCAATTC
GTAAAACACAACAGATCCAGAAACAACCATATTCACACGTAGGTAGCATC
ATAGAAAAAGTTCCAATCTTGTTCAAATTTACACATGAGTTGCAGTTTAG
TCTCCATTGCCATATTCCATTTAATCGGTATTTGAAATAGTTCTGTGTCG
AGTTTGAAAAATCAAGCCACCAATTCGTCAAACGAGACAGATCTAGAAAT
ATATAACCATTTTCACACGTAGCGTCATGGAAAAAGTTCCAATCTTGTTC
AAATTTACACATGAGCTGCACTTTAGTCTCCATTGCCATATTCCATTTAA
TCGGTATTTGAAATAATTCTGTGTCGAGTTTGAAAAATCAAGCCACCAAT
TCGTTAAACGAGACAGATCTAGAAATATATAACCATTTTCACACGTAGCG
TCATGGAAAAAGTTCCAATCTTGTTCAAATTTACACATGAGCTGCACTTT
AGTCTCCATTGCCATATTCCATTTAATCGGTATTTGAAATAATTCTGTGT
CGAGTTTGAAAAATCAAGCCACCAATTCGTTAAACGAGACAGATCTAGAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATTCCATTTAAAATTAGTATTTATAATAATTCTGTGTCGAGT
TTGAAAAATCAAGCCGCCAATTCGTAAAACACAACAGATCCAGAAACAAC
CATATTCACACGTAGGTAGCATCATAGAAAAAGTTCCAATCTTGTTCAAA
TTTACACATGAGCTGCACTTTAGTCTCCATTGCCATATTCCATTTAATCG
GTATTTGAAATAATTCCATGTCGAGTTTGAAAAATCAAGCCACCAATTCG
TTAAACGAGACAGATCTAGAAATAACCATTTTCACACGTAGCATCATTGA
AAAAGTTCCAATCTTGTTATAATTTACACATGAACTCCATTTTAGTGTTC
ATCAGCAAATTCCAGAATCAGTTTACTTGAAATGATTCTGTGTCGAGTTT
GAAAATCATGCTAGATACGTCCTAGCCACATCCCATTGTCACTGACCTTT
GTTAACAGTGACATACTGACAGATCCAGAAGTAACCTTGTGTAGCATCAA
GAAATATGTTCCAATCGTATTCAAATTTACACATGAGCTGCATTTTTGTT
TATTTATTTTTATATTAGAAGCCATTATTTCCTAAGAATAAAGTCTAAAA
CAAGAAACTAAAAGGGAAAGTGATTTAAGGTAGAATTTTCACTCAGAAAG
CTTTATGAAAACTATAATATATGACAGAATGTTGAAAAAGTTTACAAAGA
AAAATCACTTCAAAGTTTCTTCGGTTTGAAAGTCTCTTGCCCACTAAAGC
AAAGAAAATGTTCAAGAAAGTATGAATCAACACATGAAATCAATCTCCTC
GCTTCAACCGCCATCTTGTTTTGTTTTGAAAACGTTTGTTGTTTAAGGAG
CGCGGAATCAGAAAATATATCTTTTTTAGCCAGTACCCGACTTTCGCAAG
CTTTTCCCTTTCGAGACGGCAAAAAGTGTGTTACTGGTATTAAGCGCCGT
TTCTGCCAAAACGGACAGACAGAAGGAAACACGGACAAAAAAATAGTGAC
ACTCTCTTTAAAGGCCCACTCGCTACGCTGGGCCAATTAGGTTAATCATT
TTCCAATATAATAACGGGTTTATGCATTTATATTTTTGAGGATAGAGTGC
CTAAAGCGATTTGGAAAAAACTCGCAGTTTTGACCCGCAAAGTCGATGAC
GGTAAAAGTGCTGATTTACCGTTGTCCTCAGTCAGGATTAGAAGCTCACA
ATCTTCGTCGCAAAAAAAACATGGATAGATAAACTCGCTAATACTGTATT
CCCCAAAAAACAGAGCCTACACCACTAAGAACGACATCAGTAATAATGCT
TAACTGCTCAAGTAAAAAAAATAGAAGTTAGGGTGCAGGGTCTGTATATA
ATCTGTTGATTTCACAGTGCACTGGTTATGAAGGCTTTGTTGGCAAAATT
GAAATTGTTAAAAGGCACGAATTTAAAGTTTTTATTCTGGAAAGGTATTC
TTTACATTACGTTCAGTTAAACTGCACTTTTAAGCATACACTTTTGCTGT
TCTAACTAAGTACACATTGTTTTATAGGAACTTCTTGAATTATAAACCTA
AGAATGCTCTAAAGTACTGTTCTTAATTTCACCATTTTGTGCAATTCCCT
AAAAAATCGGATTGTTTAGGGCTCATAAAACCTTAAAATGTTTTCTTGAA
TTGTTCCTACTTTTTTAGCAATTGAAGAGCCTCGTGTTCTCATATATTTT
GCTCTTATAAAAAATGTGTACCTGTCTTTTTATCATAGCCAACAGATCCA
CTACGAGATCCACCACCGGCTTATTTCCCACCCGGTACCGCCGCAACATC
AACCTCATCGTCCAATGACACGCCACGGATGGTGTACACTGGTGAAACCG
TAACTCAAATCAATAATGAATCACCCCCTCCCTATGAACCATGAGTCAAT
GAAAGATGTATTAAAGGATATATTGGCTTGAGTGGATCCTGCATTTCTAT
CAGACATTAAGGACAAACTATTCTTTCGTATCATTGAAACAATAGCAGAA
GGGCAAAGTATTGGATGATATGACGAGGGTGGTATTAAGACATGACAAGG
GCACATCAAGACATGACAAGGGCGGTATCAAGACATGACAAGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016503XLOC_016503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029027-exon-sc0000720-1575043694:154799..155435TCONS_00029027-exon-sc0000720-1575043694:154799..155435Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1575043694:153456..153612TCONS_00029027-exon-sc0000720-1575043694:153456..153612Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1575043694:152851..152907TCONS_00029027-exon-sc0000720-1575043694:152851..152907Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1575043694:151907..152128TCONS_00029027-exon-sc0000720-1575043694:151907..152128Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1575043694:148767..149047TCONS_00029027-exon-sc0000720-1575043694:148767..149047Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1575043694:148691..148701TCONS_00029027-exon-sc0000720-1575043694:148691..148701Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1510915933:154799..155435TCONS_00029027-exon-sc0000720-1510915933:154799..155435Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1510915933:153456..153612TCONS_00029027-exon-sc0000720-1510915933:153456..153612Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1510915933:152851..152907TCONS_00029027-exon-sc0000720-1510915933:152851..152907Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1510915933:151907..152128TCONS_00029027-exon-sc0000720-1510915933:151907..152128Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1510915933:148767..149047TCONS_00029027-exon-sc0000720-1510915933:148767..149047Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1510915933:148691..148701TCONS_00029027-exon-sc0000720-1510915933:148691..148701Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1491911889:154799..155435TCONS_00029027-exon-sc0000720-1491911889:154799..155435Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1491911889:153456..153612TCONS_00029027-exon-sc0000720-1491911889:153456..153612Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1491911889:152851..152907TCONS_00029027-exon-sc0000720-1491911889:152851..152907Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1491911889:151907..152128TCONS_00029027-exon-sc0000720-1491911889:151907..152128Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1491911889:148767..149047TCONS_00029027-exon-sc0000720-1491911889:148767..149047Clytia hemisphaericaexon
TCONS_00029027-exon-sc0000720-1491911889:148691..148701TCONS_00029027-exon-sc0000720-1491911889:148691..148701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000720supercontigsc0000720:148691..155435 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120142	0.121422	0.303304	0.140794	22.7852	19.0903	2.89398	3.14161	0.469101	0.79635	0.147841	0.352096	1.31388	1.21874	0.152695	0.422313	0.587038	0.579162	1.75625	1.19035	0.199517	0.189221	0	0.0303178	0.0354738	0.276063	0.0453046	0	0.137045	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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