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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029034 ID=TCONS_00029034|Name=TCONS_00029034|organism=Clytia hemisphaerica|type=transcript|length=1708bp
CTTTATTTAAGCATGATTTATATCATATTATTTGAATGACTTCTGTTTTT
TCAATATATCAGACACAATTAaatgatattcaaaattttacaaaaatata
tactATAAAGAACATCACTGAAATCAAGCAAGCATTATCATTTCAAGTTC
ATAAACTGATAGTTGGTTTACAAATTTAAAAGGTTCCTGGGGGAGGGGTA
CTTGTTTTGCGAGGTGACAGGTATGTCCAAGCTTAAAATcgaaatcgacc
cttagagagagaaagatttgacgtttttgggacccttagagcttttttta
tcaaaattttcgtcgaaatttttgtccaaattattgaaaatcacTTCTCT
TTAAGGGAGGAACTCTTTTCTTGACCtggattttcgtgaattttggacCC
TCAGAGAGACTCAGGgactcaatttgctttttaattgtttttgtacccct
ttgagagactttcggcAGTGTGAAAAAGGGATCCTTATGGCTCACGCATA
CCCGGCAACAATTTTTGGTAAGGTTTCAAGTAGGAAAATGTTCAATTAAT
TAATGTAGTCTGACCGAAGCACAAGTGTTCCAGACTTGAGATGTTTGCTC
ACAATCCCATCTGAAAGATAAAACATATTCTCCTTCTTCCAAATCTTTGG
GAATCTCCACCAAATCAATGATGGAGaatggaaaatgttttttgggTTCT
CTGAAATAGAAACCATGTCCTTCAAGGTTAGGGCCAGGTGGAGGGAACTG
GGTACCATTAATACATGGAGGATTAAGATAGTTACTACCTCCATGGATAC
CATTGCATGATGGGATTGGGTTTTTGGTCCATTGAGAGTCAGGAGGGAAA
GTACCCTTATCGGTTCGAACAGCAGGGAATTCGAATCTTGTTGATCTGTC
TTCGCCGAATTGCACCCATTGTTTATTGCCAACAAAACGAAGCGGTGTTT
GTTGAAAACATTCTTCAGTTAAAGCTTTGCGTCCTTCGTTCGGGATTTTA
CACAACCTATATGAATATCCACCACCATGATTGGCACGAATTCCCCAAGC
GACTTCCACGTGGTCACCACGTGTCCAATCGGTCACGTGTATATCATGAG
CAAATTCGAATTCTGTTGCTTTCGGACCAAGCTGATAGCCACCGTTATCG
TTTCCACATTCTTTATCACCAAAGCATCCATAAGGGTTACCACCAGCGGC
TCCACAAGGTGTCGCTACAGGTGCAAAACCAGGTGCTCTCCAAGGGTTGT
GTAAAATTTGATCTTCATACCCTGTATGTGCGTAGGTACGAAGTTTAGGA
TCAAACAGTGTTGGCTTCTCTATAAAAGTATAATTAGTGAACCAAAAACA
GGCTAATCCAATATGCTTGTTCAGCAAACCTTCACAATGTTCAGGATTGG
GACACACTCTGTGCTTAGGTATATCAGCACCTGGCGTACACATTTGTTGT
GATTTCATACCCACAAAACCGTACTCGTACCCATGCTCCATTTCAACCCA
TTGTGGATGGTCAAACCAATTGTAAGGAATCACCATTGCTCCGTGTCCAA
AAACATTAGCAGGGAAAAGATGAAACACAAAAAAGCAAAATATAAATGAT
CCAAACTTCATTTTTAAACGTGTTATTGCTACAACGGACTacaacattca
gtcttttttacttgataaaccTTCCTCTTATTAGCCTCTAGATAGAGCTT
TGGTTTTG Run BLAST on NCBI protein sequence of TCONS_00029034-protein >TCONS_00029034-protein ID=TCONS_00029034-protein|Name=TCONS_00029034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MKFGSFIFCFFVFHLFPANVFGHGAMVIPYNWFDHPQWVEMEHGYEYGFV
GMKSQQMCTPGADIPKHRVCPNPEHCEGLLNKHIGLACFWFTNYTFIEKP
TLFDPKLRTYAHTGYEDQILHNPWRAPGFAPVATPCGAAGGNPYGCFGDK
ECGNDNGGYQLGPKATEFEFAHDIHVTDWTRGDHVEVAWGIRANHGGGYS
YRLCKIPNEGRKALTEECFQQTPLRFVGNKQWVQFGEDRSTRFEFPAVRT
DKGTFPPDSQWTKNPIPSCNGIHGGSNYLNPPCINGTQFPPPGPNLEGHG
FYFREPKKHFPFSIIDLVEIPKDLEEGEYVLSFRWDCEQTSQVWNTCASV
RLH Run BLAST on NCBI transcript from alignment at sc0000720:75786..77493 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029034 ID=TCONS_00029034|Name=TCONS_00029034|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at sc0000720:75786..77493 (Clytia hemisphaerica)
CAAAACCAAAGCTCTATCTAGAGGCTAATAAGAGGAAggtttatcaagta
aaaaagactgaatgttgtAGTCCGTTGTAGCAATAACACGTTTAAAAATG
AAGTTTGGATCATTTATATTTTGCTTTTTTGTGTTTCATCTTTTCCCTGC
TAATGTTTTTGGACACGGAGCAATGGTGATTCCTTACAATTGGTTTGACC
ATCCACAATGGGTTGAAATGGAGCATGGGTACGAGTACGGTTTTGTGGGT
ATGAAATCACAACAAATGTGTACGCCAGGTGCTGATATACCTAAGCACAG
AGTGTGTCCCAATCCTGAACATTGTGAAGGTTTGCTGAACAAGCATATTG
GATTAGCCTGTTTTTGGTTCACTAATTATACTTTTATAGAGAAGCCAACA
CTGTTTGATCCTAAACTTCGTACCTACGCACATACAGGGTATGAAGATCA
AATTTTACACAACCCTTGGAGAGCACCTGGTTTTGCACCTGTAGCGACAC
CTTGTGGAGCCGCTGGTGGTAACCCTTATGGATGCTTTGGTGATAAAGAA
TGTGGAAACGATAACGGTGGCTATCAGCTTGGTCCGAAAGCAACAGAATT
CGAATTTGCTCATGATATACACGTGACCGATTGGACACGTGGTGACCACG
TGGAAGTCGCTTGGGGAATTCGTGCCAATCATGGTGGTGGATATTCATAT
AGGTTGTGTAAAATCCCGAACGAAGGACGCAAAGCTTTAACTGAAGAATG
TTTTCAACAAACACCGCTTCGTTTTGTTGGCAATAAACAATGGGTGCAAT
TCGGCGAAGACAGATCAACAAGATTCGAATTCCCTGCTGTTCGAACCGAT
AAGGGTACTTTCCCTCCTGACTCTCAATGGACCAAAAACCCAATCCCATC
ATGCAATGGTATCCATGGAGGTAGTAACTATCTTAATCCTCCATGTATTA
ATGGTACCCAGTTCCCTCCACCTGGCCCTAACCTTGAAGGACATGGTTTC
TATTTCAGAGAAcccaaaaaacattttccattCTCCATCATTGATTTGGT
GGAGATTCCCAAAGATTTGGAAGAAGGAGAATATGTTTTATCTTTCAGAT
GGGATTGTGAGCAAACATCTCAAGTCTGGAACACTTGTGCTTCGGTCAGA
CTACATTAATTAATTGAACATTTTCCTACTTGAAACCTTACCAAAAATTG
TTGCCGGGTATGCGTGAGCCATAAGGATCCCTTTTTCACACTgccgaaag
tctctcaaaggggtacaaaaacaattaaaaagcaaattgagtcCCTGAGT
CTCTCTGAGGgtccaaaattcacgaaaatccaGGTCAAGAAAAGAGTTCC
TCCCTTAAAGAGAAgtgattttcaataatttggacaaaaatttcgacgaa
aattttgataaaaaaagctctaagggtcccaaaaacgtcaaatctttctc
tctctaagggtcgatttcgATTTTAAGCTTGGACATACCTGTCACCTCGC
AAAACAAGTACCCCTCCCCCAGGAACCTTTTAAATTTGTAAACCAACTAT
CAGTTTATGAACTTGAAATGATAATGCTTGCTTGATTTCAGTGATGTTCT
TTATagtatatatttttgtaaaattttgaatatcattTAATTGTGTCTGA
TATATTGAAAAAACAGAAGTCATTCAAATAATATGATATAAATCATGCTT
AAATAAAG Coding sequence (CDS) from alignment at sc0000720:75786..77493 >TCONS_00029034 ID=TCONS_00029034|Name=TCONS_00029034|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0000720:75786..77493 (Clytia hemisphaerica)
ATGAAGTTTGGATCATTTATATTTTGCTTTTTTGTGTTTCATCTTTTCCC
TGCTAATGTTTTTGGACACGGAGCAATGGTGATTCCTTACAATTGGTTTG
ACCATCCACAATGGGTTGAAATGGAGCATGGGTACGAGTACGGTTTTGTG
GGTATGAAATCACAACAAATGTGTACGCCAGGTGCTGATATACCTAAGCA
CAGAGTGTGTCCCAATCCTGAACATTGTGAAGGTTTGCTGAACAAGCATA
TTGGATTAGCCTGTTTTTGGTTCACTAATTATACTTTTATAGAGAAGCCA
ACACTGTTTGATCCTAAACTTCGTACCTACGCACATACAGGGTATGAAGA
TCAAATTTTACACAACCCTTGGAGAGCACCTGGTTTTGCACCTGTAGCGA
CACCTTGTGGAGCCGCTGGTGGTAACCCTTATGGATGCTTTGGTGATAAA
GAATGTGGAAACGATAACGGTGGCTATCAGCTTGGTCCGAAAGCAACAGA
ATTCGAATTTGCTCATGATATACACGTGACCGATTGGACACGTGGTGACC
ACGTGGAAGTCGCTTGGGGAATTCGTGCCAATCATGGTGGTGGATATTCA
TATAGGTTGTGTAAAATCCCGAACGAAGGACGCAAAGCTTTAACTGAAGA
ATGTTTTCAACAAACACCGCTTCGTTTTGTTGGCAATAAACAATGGGTGC
AATTCGGCGAAGACAGATCAACAAGATTCGAATTCCCTGCTGTTCGAACC
GATAAGGGTACTTTCCCTCCTGACTCTCAATGGACCAAAAACCCAATCCC
ATCATGCAATGGTATCCATGGAGGTAGTAACTATCTTAATCCTCCATGTA
TTAATGGTACCCAGTTCCCTCCACCTGGCCCTAACCTTGAAGGACATGGT
TTCTATTTCAGAGAAcccaaaaaacattttccattCTCCATCATTGATTT
GGTGGAGATTCCCAAAGATTTGGAAGAAGGAGAATATGTTTTATCTTTCA
GATGGGATTGTGAGCAAACATCTCAAGTCTGGAACACTTGTGCTTCGGTC
AGACTACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029034-exon-sc0000720-1491911889:75786..77493 | TCONS_00029034-exon-sc0000720-1491911889:75786..77493 | Clytia hemisphaerica | exon |
| TCONS_00029034-exon-sc0000720-1510915933:75786..77493 | TCONS_00029034-exon-sc0000720-1510915933:75786..77493 | Clytia hemisphaerica | exon |
| TCONS_00029034-exon-sc0000720-1575043694:75786..77493 | TCONS_00029034-exon-sc0000720-1575043694:75786..77493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000720 | supercontig | sc0000720:75786..77493 . |
Blast
The following BLAST results are available for this feature:
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