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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029050 ID=TCONS_00029050|Name=TCONS_00029050|organism=Clytia hemisphaerica|type=transcript|length=1547bp
GCGTTTTCATGTAATACATGAATACTATGAAGTGTAAGCTTTCTTTATAA
TGACGTAATGTTCTGAACAAAggaaatctgattggttgatgcTTTTTGAG
AGCGAAAACGAAATCGGATCATGGCGCTGAAGGCGGCGGCGGCCCCCTGG
AGCTGGGAGCCCTGCCTTATTACCCCTCCAGCAGGGAGAAACAATGGGGC
TCATTTGGGGGTCATACAACTGTATTTATTTCCAATTTGGTTCAATGaat
ttcaatcaattGGGATCAAATTGGTTCAATATATACATCTTTGGGTGAAG
GCAATAATTGTGATGCAAGTTTGCGTATGTCTCATCATGACGCTTCTACA
TCTCATCATAGCGATTCAATGTATCATCATGCAGCAGCATGACACTTAAA
GGCTTCATCATGGTGCTCCTATGTCTCATCAAGGCGCTCCTACGTCTCAT
CGAGGCCCTCCAACATAACATCGAAGTGCTCCtacgtctcatcatggcgc
cCCTATGTATCATTATGGTGCTCCAACGTCTCATCAAGGTACTCCTATGT
TTCATCATAGCGCTCCtacgtctcatcatggcgctcTCATCTCTGATCTC
ATCATGGTTGGTCGCACATCTACCCTTTGACCTCACAATTCAACCCTCCG
ACGTCACATCTCaaatcaagtttaaagttttGGAAAGCTTAAAACTACTT
GAAAATGAAGTTTTACCGAACGATTGGTTTGGTTCAAGTAAGGTTTGatg
attttattgcttaaacaaGTCTTTTATGAGATTAACTTGAGACGAGTGAA
GTTTccccaatcaaaatttccaaaatttatggtTTTCCCCCGTCAAATTT
CATTCTCGTCAGgattttttagccatttgaacTACCTTCGAAGGGCATGA
TGTACTCCAATATTAAGGGTTTCAGTGCagtgtttgatatttttttagat
aTGATATTTATAGTTactggttttatttttaatatttgtttaaCATTGCT
TTTCACTTCGCCTAAACTGAACATCATACTTCTCATTAGAACCCCTTTct
tgcaaaattttcaaaatatatatccCCATCATCAAAAACAAAAGGGGACA
CTATGTTCTTTTAGCACAAGACACTAATCTCAGTCATTACATTTTCAAGA
CTTTATTTGCACCCCCCTTATTATTCCATTACTAATTTCTAATGTTTGCC
CAACGAATCTAGGTTTTATGtctcttttatagtattttccCATCCCTTCT
CTATCAAGTTCAAATTGATTTGTCTCTTTTTTGAAGCTCAGTCTataatt
aacttttatttttagtgATCTCTCTTTTGATAATCTTGTGAAATGTATCA
TTTAAAATAACTACAAgctgcatttaaaaaaataaggaGCCACAATATCT
TGCAAAGAATCACATTGTTAATGTTGTTTTAAGAATTTATTAGTTATGTT
ATATGAAAGTTAGGAATGATATCAGTaatttatcatttgtttttaacTGT
ATTTTGTAGGTCTGTCATCttgtgaaaaattaaaaaaacaattctaC Run BLAST on NCBI protein sequence of TCONS_00029050-protein >TCONS_00029050-protein ID=TCONS_00029050-protein|Name=TCONS_00029050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MTLKGFIMVLLCLIKALLRLIEALQHNIEVLLRLIMAPLCIIMVLQRLIK
VLLCFIIALLRLIMALSSLISSWLVAHLPFDLTIQPSDVTSQIKFKVLES
LKLLENEVLPNDWFGSSKV Run BLAST on NCBI transcript from alignment at sc0000723:158992..163778+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029050 ID=TCONS_00029050|Name=TCONS_00029050|organism=Clytia hemisphaerica|type=transcript|length=4787bp|location=Sequence derived from alignment at sc0000723:158992..163778+ (Clytia hemisphaerica)
GCGTTTTCATGTAATACATGAATACTATGAAGTGTAAGCTTTCTTTATAA
TGACGTAATGTTCTGAACAAAggaaatctgattggttgatgcTTTTTGAG
AGCGAAAACGAAATCGGATCATGGCGCTGAAGGCGGCGGCGGCCCCCTGG
AGCTGGGAGCCCTGCCTTATTACCCCTCCAGCAGGGAGAAACAATGGGGC
TCATTTGGGGGTCATACAACTGTATTTATTTCCAATTTGGTTCAATGGTA
AGTAAGTTACTCTTGTTTATTCCATTAGCTAgctattttcaaactcaaca
atGCTTAAAATTGGAATTTCAGTCTGATTAAAAGTACTGCAGCTGGACCT
TACTTTCTGATATTAAATATATTTTGTAGCTATATTGCGTGTTTGAATAG
TTGTTTAGGAGAAGTTACCCACATAAATTACTTTCCCTCGGCCAGTTAAA
AAATGATGATAGATTATCTTGTAACTTAAAGGTAACTGCTGCGGTTATAT
ATCCAAAAGAACGTTGCGCTCTACTACCAGGTCACTAGTCAACTGTTGTT
GTGTCGtctgattgagattcgattgtcgaatgcaatcgaatctcaaccac
aattttcagattcaattgatattcgattgtgttcgattgagattcgatta
cgttctattgcccagacgatctcaatcgaacggaatcgacaatcgaacca
gtcgaaccaaatcgaacgcaatcgaccgattgaaattcgattgtcgaacg
caatcaaatctcaatcgaatattaccgcaattttcagattcgattgatga
ttcgattgcgattcgaatgatgttcgattgcgatcgattgcgttcgatcg
tcgcttcgttgacccccggattgttcctggcataatttctacgggaaatc
gaaagtaatttcatttggcttgtgatgtttgagaccttggatgttggaaa
gctgcaagaataaagccagacgatctcaatcgaacggaatcgacgatcga
acctgtcgaacaacaatcaaaccaatcgaatattacccagaattttgacg
ttcgattgagattcgattgcgttcgacaattgaatttcaatcggtcgatt
gcgttcgatttggttcgactggttcgatcgtcgattccgttcgattgaga
ttgtctggNCTACCACTAGCTAGTCAACTGTTGTTGTGTCGtctgattga
gattcgattgtcgaatgcaatcgaatctcaaccgcaattttcagattcga
ttgatattcgattgcgttcaatttagattcgattacgttctaTTGCGCGG
TGCTGGCGGTTGCGTCATGACTCCCGTTCTTTTGCTTGGTTAACATTGAA
GCGCTTCTTTTTTTGCACGGgaaaacatgtggttttgaaCCGTGACCTAA
GGATTCGGCCCGAAGCGAATAAGGGCGGGATAAGAAAAGCAAGTGAAGTG
TCTGGAAGTGTTATCATGAGGGCAGAAGGACAAATTGCCGAATTAGGTCA
CGTGACGAATCATATCCTTTCCATACGGTTGAGAAAGTATGACGAAAGTG
GTGGATTGTATGTTTTCAAGACATCAGAGGGGGTCAAACACTCTTCTTTG
ATTTACGATGGAAAATCAGCCTTCTTTAGAGCATCGAGCAATCAAACGCA
GTCGAAAGACGATTAAACGGCAATCGAACGCAGTCGAACGACAATCGAAT
GCAgtcaaacaacaatcgaaccaattgaatattacccagaattttgacgt
tcgattgagattccaTTGCGTTccacaatcgaatttcaatcggtcgattg
cgttcgatttggttcgactggttcgatcgtcgattccattcgattgagat
tgtctggataATTACctgtttcatgcatattgtaataattatgcatgggt
gtatcattgtttttctactggactacataattattcaacagggtggcctc
tttgaaaaaaggtctattcgtgGCTGCCCCCAATACGGCACTACTGGAAA
AATGATTGGATTGTATGTTATCTCACACTGAACAATAATGTCCGGTGCAT
TTACAGAATACTTTTCTCCACCAGACAAAACACCGGTGCGTCGTCAGGGT
TGTCTGGATGGAAAATCAGATAAGCATGTTACTAGTACCTCGGGACGAGG
AGCAATTAATACGAGCAAATGAAATTGgttcaatcgaacgtaatcgagcA
ACACTTTTTCGATTGAGATCAATTGATTCAACTTTTGGTTCGTTCAATTG
ACACTGTCTGGTCAGAACGGGTAATAGTTGTTTAAGAGAACGTGACgtta
ttttgaataactaattactcctaGGGACAATTGATCATTTATCACGTTTT
TACTGGCTGAGAGCAGACAATTATGTGGAGTAATTTTTTGTTCAATAGAG
TGTCGCGTTCTCCTAAACAACTATATGGAATAATCGATTGAACGTAATAA
ATGTTAGCCAGGATTAGTGTTCAATTAGGTGTCCATTGAAGAATTATTAT
GTTTGCGTCACTCGCTTGCATCATATTTTCCACTAATTTTCCAATGCAGA
AAAGCAGGAAAAAATTTGGAAGAAAGAAATTGTAACAgaattgaaacaaa
acatcaaatctAGGGAGGAATGATAAGAAAACTGTGTGTTCAAATcaaac
gaacaaacgaacacaCAGCTGAAATTTCGCTGATAAATTAGATTGAAACT
ACTGGTTAGTTTAGCTATACCTTTTGTAGTCTGGACCCATACAAAGTTTT
AATCCATTTCACAAAGCTCACATGAGATAAAAATTAGTATGGTAGAattg
gagattttgaatttgccaccagaaaaaaaaacgtttgaAAACTGGCTAAT
CAgaattttgttgcataaatttttCGGGAGAACAATATACTAATCGGCCA
ATCAGAAGCGTTTCTACaaaaaattgtagaaatttttgtccaaaactacC
CGTCTACTATCGAGTTCAGAAAAAATCGTGAGTAGACGGGGCCCCATCTA
TACCTTTTGATGTTTTGTTCCAATTATGTTACAATTTCTTTCTTCCAGAT
TAGCGTTTTCTCTAGCTCTTCGCCCAGAACACGCACacataaaataaatg
aaatttcaCTAATTAATTATATTGAAACTACGGGGAAGAATAGTGTTAGT
TTAGCTATACCTTGGAAGAATACAACAGATACCATCAGAAATAGAAAATT
GGCTTACTgatgtgatttaaaaaaacGCAGAAATCTTTTCGTCTGCCCGC
CCGCATGTATTTTTAACAACCGCTACAACGCAAACAGAATAATTTTTATA
TGAACGTCTTACTCTGGTCACATTGGATCAATCAACCatcaattgaattg
aaatttaattttcataaaattaaaCCTGCATTGAAGGTGTATAAAACAGA
GATGTATAAGAGTCTACGTTTAGTATCTTCAATAATGGAGAAAATTACAA
TTAAATTAGATAGTTACAATTTTGTTCCACAAtttagaatttcaatcaat
tGGGATCAAATTGGTTCAATATATACATCTTTGGGTGAAGGCAATAATTG
TGATGCAAGTTTGCGTATGTCTCATCATGACGCTTCTACATCTCATCATA
GCGATTCAATGTATCATCATGCAGCAGCATGACACTTAAAGGCTTCATCA
TGGTGCTCCTATGTCTCATCAAGGCGCTCCTACGTCTCATCGAGGCCCTC
CAACATAACATCGAAGTGCTCCtacgtctcatcatggcgccCCTATGTAT
CATTATGGTGCTCCAACGTCTCATCAAGGTACTCCTATGTTTCATCATAG
CGCTCCtacgtctcatcatggcgctcTCATCTCTGATCTCATCATGGTTG
GTCGCACATCTACCCTTTGACCTCACAATTCAACCCTCCGACGTCACATC
TCaaatcaagtttaaagttttGGAAAGCTTAAAACTACTTGAAAATGAAG
TTTTACCGAACGATTGGTTTGGTTCAAGTAAGGTTTGatgattttattgc
ttaaacaaGTCTTTTATGAGATTAACTTGAGACGAGTGAAGTTTccccaa
tcaaaatttccaaaatttatggtTTTCCCCCGTCAAATTTCATTCTCGTC
AGgattttttagccatttgaacTACCTTCGAAGGGCATGATGTACTCCAA
TATTAAGGGTTTCAGTGCagtgtttgatatttttttagataTGATATTTA
TAGTTactggttttatttttaatatttgtttaaCATTGCTTTTCACTTCG
CCTAAACTGAACATCATACTTCTCATTAGAACCCCTTTcttgcaaaattt
tcaaaatatatatccCCATCATCAAAAACAAAAGGGGACACTATGTTCTT
TTAGCACAAGACACTAATCTCAGTCATTACATTTTCAAGACTTTATTTGC
ACCCCCCTTATTATTCCATTACTAATTTCTAATGTTTGCCCAACGAATCT
AGGTTTTATGtctcttttatagtattttccCATCCCTTCTCTATCAAGTT
CAAATTGATTTGTCTCTTTTTTGAAGCTCAGTCTataattaacttttatt
tttagtgATCTCTCTTTTGATAATCTTGTGAAATGTATCATTTAAAATAA
CTACAAgctgcatttaaaaaaataaggaGCCACAATATCTTGCAAAGAAT
CACATTGTTAATGTTGTTTTAAGAATTTATTAGTTATGTTATATGAAAGT
TAGGAATGATATCAGTaatttatcatttgtttttaacTGTATTTTGTAGG
TCTGTCATCttgtgaaaaattaaaaaaacaattctaC Coding sequence (CDS) from alignment at sc0000723:158992..163778+ >TCONS_00029050 ID=TCONS_00029050|Name=TCONS_00029050|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000723:158992..163778+ (Clytia hemisphaerica)
ATGACACTTAAAGGCTTCATCATGGTGCTCCTATGTCTCATCAAGGCGCT
CCTACGTCTCATCGAGGCCCTCCAACATAACATCGAAGTGCTCCtacgtc
tcatcatggcgccCCTATGTATCATTATGGTGCTCCAACGTCTCATCAAG
GTACTCCTATGTTTCATCATAGCGCTCCtacgtctcatcatggcgctcTC
ATCTCTGATCTCATCATGGTTGGTCGCACATCTACCCTTTGACCTCACAA
TTCAACCCTCCGACGTCACATCTCaaatcaagtttaaagttttGGAAAGC
TTAAAACTACTTGAAAATGAAGTTTTACCGAACGATTGGTTTGGTTCAAG
TAAGGTTTGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029050-exon-sc0000723-1491911889:158992..159238 | TCONS_00029050-exon-sc0000723-1491911889:158992..159238 | Clytia hemisphaerica | exon |
| TCONS_00029050-exon-sc0000723-1510915933:158992..159238 | TCONS_00029050-exon-sc0000723-1510915933:158992..159238 | Clytia hemisphaerica | exon |
| TCONS_00029050-exon-sc0000723-1575043694:158992..159238 | TCONS_00029050-exon-sc0000723-1575043694:158992..159238 | Clytia hemisphaerica | exon |
| TCONS_00029050-exon-sc0000723-1491911889:162479..163778 | TCONS_00029050-exon-sc0000723-1491911889:162479..163778 | Clytia hemisphaerica | exon |
| TCONS_00029050-exon-sc0000723-1510915933:162479..163778 | TCONS_00029050-exon-sc0000723-1510915933:162479..163778 | Clytia hemisphaerica | exon |
| TCONS_00029050-exon-sc0000723-1575043694:162479..163778 | TCONS_00029050-exon-sc0000723-1575043694:162479..163778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000723 | supercontig | sc0000723:158992..163778 + |
Blast
The following BLAST results are available for this feature:
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