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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029105 ID=TCONS_00029105|Name=TCONS_00029105|organism=Clytia hemisphaerica|type=transcript|length=1655bp
CAATTTTTGGACAACCGGGTTATAATGATATGTGTGCGTCGGGATGCGTT
GTAATTTCATAATGATTTCATATAGCGCGTCGGCGTTATTGCATCAGCCG
TTATCTCCCTTATATTGCGCCACCTCTTCCGAAGCGTACTGTGGACAATT
TTCTGAAATGTTTGAGTAGATTCGCAGTAGTAGCTGGCTAAGTTGTTTCA
CAAACGTGATGGTTGAATGGCTGGAAGAAGAGTTCAAGCAGTCTCAACTT
TCATCATATCTTGAGGTTGAGGTGAGAGTTTATTGATTCCTTgtcaaagt
tattttcaaaaaagatagcaTATTCAtagtttatattttcttttttgcat
attataaatcaaaatttactaAAAATGAACACTCAAATCTCTCTGTTGAT
TGACAAAAGACAGAAAGAATAATGGACAAAATGTATATATGAATGAATTT
GGtgttgaaatgaaaatgttggTAATTCGTTGATTGTTTATTGTTGTTTT
AGTATCTGGTGTTACATGTTTATAGTATCGAAGAAGTCCATGGCTTTACA
TCGTCCTTGAGCTTGGTATTACCATCGCCtttctgtttttgttgttgGTT
CGTTTCTTCACACCTGAATACTGCACCGAAAGAGTTCATAAAAGTGATAG
ATATGCTATGCCGGGATCAATCAATAACCAAATAAAGACCCTGTCGACGC
ACCAGACTTAACGAACACGGGACATGCGAAAGTCcagtgtaaaatgagaa
ttttttttaccaccggacaatctctacaccggacttaaggaagtcggatg
tctagtgtcggagaaggatatttttttccaccggacaatcaaaacaccgg
caAGaaattcAATCGGCGACCAtctatttgcaaaattttaacgCCACTAT
TATGCTGGTATAATTGAAAATGCACATGTTCACGTATCCTACTAAACACT
ATCACGTTTCACGATTAGATTGACCAATGTTTTTTCAAAGCTTATTCGTT
ATTGGACTATTATGATGCTGCAATGGATTTTTGGTTCAGTATACCTATCC
TGTATCTAATTCAATGTCTTGTTATTGGAATTATTGCTGTTGGAATAACG
TTGGTATTGGACAATAATTAAAGACTTTATTTCAACTAAAGAGTATTACA
TATTTCAAATGTATTGCAAAGAAGTAATTAATATTGTACAATAGTAATAT
TGTTAATATTTATAGACAATTATATGATTATCTAAAACAAGattgttcaa
aatttatgttaaaaatgaatttttttcaaaccttgttacacatttttttt
ataagcaactccatttTTCGGGCCAGGCCTGGAGTTGCTAAGGGTTTTTT
GAAATCCAGGCTCAAAGTTTGCTTAAAGATTTTCAAGCacgtttttgcat
ttttaacaatttttcaattttgaatgggcAGTAGAGgcatttttcgaaga
ttttcaaGTTGTGTCAAAGTTCTTTTTTAttgctgaggaaaaaagttgct
AATTTGGATTTGAGGCCTCAGGGTTGCTAAGCAAGGTCCTTATTTTTTGG
GCCATATTGAGGCCTGAGCCCTAATcaactcggttgcttataaaaaaaat
gtgtaatcgaCCCTGACAAAATGTTGACGATTtttgcacccattttgcct
aagcc Run BLAST on NCBI transcript from alignment at sc0000724:108368..110788- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029105 ID=TCONS_00029105|Name=TCONS_00029105|organism=Clytia hemisphaerica|type=transcript|length=2421bp|location=Sequence derived from alignment at sc0000724:108368..110788- (Clytia hemisphaerica)
CAATTTTTGGACAACCGGGTTATAATGATATGTGTGCGTCGGGATGCGTT
GTAATTTCATAATGATTTCATATAGCGCGTCGGCGTTATTGCATCAGCCG
TTATCTCCCTTATATTGCGCCACCTCTTCCGAAGCGTACTGTGGACAATT
TTCTGAAATGTTTGAGTAGATTCGCAGTAGTAGCTGGCTAAGTTGTTTCA
CAAACGTGATGGTTGAATGGCTGGAAGAAGAGTTCAAGCAGTCTCAACTT
TCATCATATCTTGAGGTTGAGGTGAGAGTTTATTGATTCCTTGTCAAAGT
TATTTTCAAAAAAGATAGCATATTCATAGTTTATATTTTCTTTTTTGCAT
ATTATAAATCAAAATTTACTAAAAATGAACACTCAAATCTCTCTGTTGAT
TGACAAAAGACAGAAAGAATAATGGACAAAATGTATATATGAATGAATTT
GGTGTTGAAATGAAAATGTTGGTAATTCGTTGATTGTTTATTGTTGTTTT
AGTATCTGGTGTTACATGTTTATAGTATCGAAGAAGTCCATGGCTTTACA
TCGTCCTTGAGCTTGGTATTACCATCGCCTTTCTGTTTTTGTTGTTGGTT
CGTTTCTTCACACCTGAATACTGCACCGAAAGAGTTCATAAAAGTGATAG
GTAAGCTAAAGGTCTCTTTTTGATCCATCAAAATTTGCTAACGCAGACAC
TTTAACGTGTGTTTCTAGGTATATCTTAGAAAGCAATCATTTTATAGTCC
TTCCATTTTCATTTGAATAATGTCTTTTTACGAGGTTCAATTATTCGTCC
AGCCATCTCTCAAAGAACGTTAAAAATCTATGATAGTCTTTTGTCTCAAT
GAAAGAATAAAAGGGATTTGTTAGCTAGTTTGCAAGCGTTCTGTTTCATT
ACTTTAACATACAAAATATTTGATAAAAAGTATACTGGTATAGGACTATA
CCTTAAGCAATTAATCATGAATGATCTAAGTTTTAAAGAGTGAAGTGATT
TTGTTCATGTTGTTATTATTATTTACCTGTGTATGGCACTTAAATATCTT
CATTGTTTTGTTGTAGATATGCTATGCCGGGATCAATCAATAACCAAATA
AAGACCCTGTCGACGCACCAGACTTAACGAACACGGGACATGCGAAAGTC
CAGTGTAAAATGAGAATTTTTTTTACCACCGGACAATCTCTACACCGGAC
TTAAGGAAGTCGGATGTCTAGTGTCGGAGAAGGATATTTTTTTCCACCGG
ACAATCAAAACACCGGCAAGGTATTATAAGCATTGAGTTTAGTGGCTTCA
CTTTTCCTTGTCCGANAATAGCGACACTACAAAAATCGAAACAAGGTACT
ATAAACATTGAGTTTAGTGGCTTTACTTTTCCTTGTCCGGGAAAGGTTAA
AGACTTTGCTCTAGCCCTTCAGGCTTTAAAATCACTGAAGCCTCAAAAGT
GACCTACATTAAAAGTTTGAATAGTGGTCAATTGATATTTTGATGAATAA
TATAATGTCAAAAAAGTGAGAGTTTACTACAATGATTACTTTATACATGC
TACCCTATCAATAAAGTCAACTCTTGTTTTTAATTTGAAGAAAATATTTT
AAAATATCTTTTTTTTACAGAAATTCAATCGGCGACCATCTATTTGCAAA
ATTTTAACGCCACTATTATGCTGGTATAATTGAAAATGCACATGTTCACG
TATCCTACTAAACACTATCACGTTTCACGATTAGATTGACCAATGTTTTT
TCAAAGCTTATTCGTTATTGGACTATTATGATGCTGCAATGGATTTTTGG
TTCAGTATACCTATCCTGTATCTAATTCAATGTCTTGTTATTGGAATTAT
TGCTGTTGGAATAACGTTGGTATTGGACAATAATTAAAGACTTTATTTCA
ACTAAAGAGTATTACATATTTCAAATGTATTGCAAAGAAGTAATTAATAT
TGTACAATAGTAATATTGTTAATATTTATAGACAATTATATGATTATCTA
AAACAAGATTGTTCAAAATTTATGTTAAAAATGAATTTTTTTCAAACCTT
GTTACACATTTTTTTTATAAGCAACTCCATTTTTCGGGCCAGGCCTGGAG
TTGCTAAGGGTTTTTTGAAATCCAGGCTCAAAGTTTGCTTAAAGATTTTC
AAGCACGTTTTTGCATTTTTAACAATTTTTCAATTTTGAATGGGCAGTAG
AGGCATTTTTCGAAGATTTTCAAGTTGTGTCAAAGTTCTTTTTTATTGCT
GAGGAAAAAAGTTGCTAATTTGGATTTGAGGCCTCAGGGTTGCTAAGCAA
GGTCCTTATTTTTTGGGCCATATTGAGGCCTGAGCCCTAATCAACTCGGT
TGCTTATAAAAAAAATGTGTAATCGACCCTGACAAAATGTTGACGATTTT
TGCACCCATTTTGCCTAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029105-exon-sc0000724-1575043694:110139..110788 | TCONS_00029105-exon-sc0000724-1575043694:110139..110788 | Clytia hemisphaerica | exon |
| TCONS_00029105-exon-sc0000724-1575043694:109519..109722 | TCONS_00029105-exon-sc0000724-1575043694:109519..109722 | Clytia hemisphaerica | exon |
| TCONS_00029105-exon-sc0000724-1575043694:108368..109168 | TCONS_00029105-exon-sc0000724-1575043694:108368..109168 | Clytia hemisphaerica | exon |
| TCONS_00029105-exon-sc0000724-1510915933:110139..110788 | TCONS_00029105-exon-sc0000724-1510915933:110139..110788 | Clytia hemisphaerica | exon |
| TCONS_00029105-exon-sc0000724-1510915933:109519..109722 | TCONS_00029105-exon-sc0000724-1510915933:109519..109722 | Clytia hemisphaerica | exon |
| TCONS_00029105-exon-sc0000724-1510915933:108368..109168 | TCONS_00029105-exon-sc0000724-1510915933:108368..109168 | Clytia hemisphaerica | exon |
| TCONS_00029105-exon-sc0000724-1491911889:110139..110788 | TCONS_00029105-exon-sc0000724-1491911889:110139..110788 | Clytia hemisphaerica | exon |
| TCONS_00029105-exon-sc0000724-1491911889:109519..109722 | TCONS_00029105-exon-sc0000724-1491911889:109519..109722 | Clytia hemisphaerica | exon |
| TCONS_00029105-exon-sc0000724-1491911889:108368..109168 | TCONS_00029105-exon-sc0000724-1491911889:108368..109168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000724 | supercontig | sc0000724:108368..110788 - |
Blast
The following BLAST results are available for this feature:
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