TCONS_00029113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029113
Unique NameTCONS_00029113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029113 ID=TCONS_00029113|Name=TCONS_00029113|organism=Clytia hemisphaerica|type=transcript|length=798bp
AAAGACAAAAGCTGATTATGCACATAAAGAAACAGCTCATATCATGATTC
CAAAGAATATAAAATCATTGGCGGCATTGAAAAGAACCCTCACGGAACAA
GCTGGTGTGAGAGATATAGCAAAGACATTACAATGGTCAGATTGCGAAGT
GCTTCTTTCAAGAGGAGTAAAAGGCCCATCTGGAACCGTTACCTTTGCCA
TTCGCACGGATAGTCAACTAAAGATTGAGCTACCAAGTGTCATGTTTGGG
AACGACAGGTTACATGCAACGGTGTATCCTATCGAAGCTAGATTCCGATC
GAAGGCTCCAGTCATTTCAATCGAAGTTTTGCCATCATCTTCAAATGCGG
TTGAAACCTCTGAAATCCGAATTAATGCAGGCGAACTCGAAGATAAAGAA
TATTTGATAACAGAACTTGGAAAATTGTCAGGAAGTTCATTGAATGCTGT
AGAAGGTAATCGACCTGTGAAGTTTAGAAAAGAATCCCGGGTATGGCCAT
GGGATGTCATTTGTGGGCGTTGCAAGACGAAAGTTATGTTACGTTTCGAC
GCGAAAACTGCCGGACGGATAGAATACTTCAAGAAAAagCATTATGATGC
GTGTACTCAGCGTGCTGAAAAGAACAAGAAAGGAAAACGACAGATGACGA
TTAAACATTCCTTGAATAGAACGAAAAAAGTCCGTGTTGCTGTCGACTCC
GACATCGAAATTGAAAGCGATGATGAAGACTTGAGCAAGtaatcaaacat
ttttttaactATTTTATGTAAATACTGTAGTTTTAGTTCACGAAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000725:167950..170613-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029113 ID=TCONS_00029113|Name=TCONS_00029113|organism=Clytia hemisphaerica|type=transcript|length=2664bp|location=Sequence derived from alignment at sc0000725:167950..170613- (Clytia hemisphaerica)
AAAGACAAAAGCTGATTATGCACATAAAGAAACAGCTCATATCATGATTC
CAAAGAATATAAAATCATTGGCGGCATTGAAAAGAACCCTCACGTAAGCA
ACAATATTTTTAATTTCTAACGCATAGGGTTCGATAAATAGACTAAGCTG
CCCTGGGCAAAATTGGGTACGGGAAATAAGAAAATTTTTTAATTTTTGTC
TTCTTCTATTCATTTTTGCCACTTTTCAGGACGAACTTTCTGAAAGCTTT
CCAACGGCGGTTACAGAAGGTACTGAAAATTAATGACGGAGAGTGTTTCT
TTTGTTATTATTCCTGTTATGGGAGTAATTGCTCTCCACTAAAAACACTG
AGTTCCTTCTGTAACCGCCGTTGCCTTCAGCAGCATGTTTTCTAAAGTTT
TTCTCGGTAATATCTTGTCCAAGGTCGGCGGAACAACCGTATTTTTGTGA
GTTTTTTTCGATTTCAAAGTTTTACTTTTTAAAGAATTTGTCGCCGCGAA
TTACCCTGTTAAAAAATTTTAAAGAACCTTTTTAGCGTAAGCCGAAATTA
GGCAGTGGCGACATTCAAAAATCTTCAGAAAAAGATAATGTTATGTTTCA
TTATATTCAAGGGAACAAGCTGGTGTGAGAGATATAGCAAAGACATTACA
ATGGTCAGATTGCGAAGTGCTTCTTTCAAGAGGAGTAAAAGGCCCATCTG
GAACCGTTACCTTTGCCATTCGCACGGATAGTCAACTAAAGATTGAGCTA
CCAAGTGTCATGTTTGGGAACGACAGGTTACATGGTATGTCTAATTTAAA
CTTAACCTTTTTTAAATCCAAAAACCTTCGCTGCACTAGCTCACCACGCG
AGTTTTTGATCAGTTTGTTGAGAACGGTGCAAGCAATACTGCACTTTTAC
CGGATTGGGATACATAAAATTCGATTTCTATTTTTACTATCCTGTATAAA
AAAACTGCGTAAGCATTTTTAACCTACTGGCTGTGCAAAAATTTAAGGAA
AAATTCTTGCCTAAAGTTTCTCTCGGCAAATTTTGAAATCCTTTGGTCAA
AAGTTTCTAAATTTGTTATTCTTTTTAAGGTTTCTTTTTCCCTTTTCCCA
CAATTTCCCCCTTTTTTCATTTGAAAAACGTGGATACGCTTTTTGATATG
AAACGATCAATTTTTCCCCAATCAGGATAGGTATCCCGATCTTGCCACAT
TGGCAGAAGAGGCCAATGGGAGAAGTTTTATACACGCTGAATAGAATCGC
TTTTTGTCCTCACAGGTTTTTTAACTTAAAGTTAAAATTATTTCATTCTA
GCAACGGTGTATCCTATCGAAGCTAGATTCCGATCGAAGGCTCCAGTCAT
TTCAATCGAAGTTTTGCCATCATCTTCAAATGCGGTTGAAACCTCTGAAA
TCCGAATTAATGCAGGCGAACTCGAAGATAAAGAATATTTGATAACAGGT
ATTTTATGTTACAGTGAAATCTTGACTTTCCGGATCAAATTTTAAAGAAT
TTTCCTGCTGAAATATAGTTCCCTTTTATTTTAGTTTTTATTCTTTACTT
TCCTAATCAGGAGATTTGTGAACATGTGGGATAAGGGTTAAAAAGATAGC
ATTTTTTTGTCGTATTATTTGTTTACCCAGCAACTAATTTGCACAAAAAG
TGGGGTCTTCAGCCTCTCCACTTACATCAGGGCTGGAAATTCCGAAAAAA
AGGTAACATAACGATAACGTTGTGCCAACTTGATATACGAAGCGAATATA
TCTTGAAATACGGAACCTTTGTATGATATTGGTTTTGGTATTCACTGGGG
TAAAAGTTTTTACTAATAGTATAATATGTAAAGAATATCTTTTCGCTAGT
TTTATTTTTGTTCTCATGATTTCAGAACTTGGAAAATTGTCAGGAAGTTC
ATTGAATGCTGTAGAAGGTAATCGACCTGTGAAGTTTAGAAAAGAATCCC
GGGTATGGCCATGGGATGTCATTTGTGGGCGTTGCAAGACGAAAGTTATG
TTACGTTTCGACGCGAAAACTGCCGGACGGATAGAATACTTCAAGAAAAG
TAAGTACATTATATATAGATATATTCGGCTGTCACAGAATAAAATCTATT
CACAGAAACTAAGAACAATGTGTTGACGAGAAACGTTTACTTGTTTTTAG
ATCCTTTACATAAATTTTAGTTGAAAACTTTTTTTCTAAATTCAGTCATC
CTCGAATCCTCCTTTGCGAGAGCCGTTTCTATAAATACAAATGTTTTGGT
GGATCTGAGGAAAGGTTTAAAATTTTATGATGGATAGTGTTGATTTCCAT
AAGGAATATTGATATTCATACTCTCCGCCATAAATTTTGAACTCCCTTCA
GATCCGCCACTGTAGCAGTAGTAGTAGTATCCGAATTTTTCAAAAACATT
TTGATGGTTTAAATGTTAAATCAACATTTCAAATATTGCAATTTTTCTTT
CAGAGCATTATGATGCGTGTACTCAGCGTGCTGAAAAGAACAAGAAAGGA
AAACGACAGATGACGATTAAACATTCCTTGAATAGAACGAAAAAAGTCCG
TGTTGCTGTCGACTCCGACATCGAAATTGAAAGCGATGATGAAGACTTGA
GCAAGTAATCAAACATTTTTTTAACTATTTTATGTAAATACTGTAGTTTT
AGTTCACGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016555XLOC_016555Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029113-exon-sc0000725-1575043694:170521..170613TCONS_00029113-exon-sc0000725-1575043694:170521..170613Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1575043694:169830..170002TCONS_00029113-exon-sc0000725-1575043694:169830..170002Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1575043694:169166..169312TCONS_00029113-exon-sc0000725-1575043694:169166..169312Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1575043694:168565..168738TCONS_00029113-exon-sc0000725-1575043694:168565..168738Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1575043694:167950..168160TCONS_00029113-exon-sc0000725-1575043694:167950..168160Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1510915933:170521..170613TCONS_00029113-exon-sc0000725-1510915933:170521..170613Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1510915933:169830..170002TCONS_00029113-exon-sc0000725-1510915933:169830..170002Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1510915933:169166..169312TCONS_00029113-exon-sc0000725-1510915933:169166..169312Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1510915933:168565..168738TCONS_00029113-exon-sc0000725-1510915933:168565..168738Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1510915933:167950..168160TCONS_00029113-exon-sc0000725-1510915933:167950..168160Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1491911889:170521..170613TCONS_00029113-exon-sc0000725-1491911889:170521..170613Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1491911889:169830..170002TCONS_00029113-exon-sc0000725-1491911889:169830..170002Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1491911889:169166..169312TCONS_00029113-exon-sc0000725-1491911889:169166..169312Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1491911889:168565..168738TCONS_00029113-exon-sc0000725-1491911889:168565..168738Clytia hemisphaericaexon
TCONS_00029113-exon-sc0000725-1491911889:167950..168160TCONS_00029113-exon-sc0000725-1491911889:167950..168160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000725supercontigsc0000725:167950..170613 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120468	0.0587375	0	0	0.139629	0.237852	1.13779	0.335094	0.177835	1.78802	0.473469	1.31891	0.410291	0.142599	0.136811	0.110114	0	0.149097	0	0.134005	0.0582375	0	0.069063	0	2.24201e-07	0	0	0	0.13371	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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