TCONS_00029151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029151
Unique NameTCONS_00029151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029151 ID=TCONS_00029151|Name=TCONS_00029151|organism=Clytia hemisphaerica|type=transcript|length=5080bp
gtgAAAATAGTATAAAAGGATGAAgaataacaaattaaaaacattgaaat
aatgGCAAGATATGATGATTCAGCATACAATGGAAAGCGTTCTTTGAGAA
GCATATTACAAATTGAATCATCAGATACGATTGCTATACAATATTATGAT
ACAAATGAGAGTGAGAGCAAAAATATCACCTACAACGAATTCATTCGAAT
ATCCAATGCCATACAAAAGGAATTATCAACTTTGGTTAAACCTTGCATAA
GTGATGGTGATTCGCGCATTTGTCTTGGGATATCGAGCCAACCAACACCT
CATTTACCCATATTAGTGTACTCGATTATCCAAACTGGTAATTTGGTCTT
AAGACCAGTGTTTATAACTACTGACACCTTTGAAGGTTTGATTATGGAAT
TTTTACGAACTCGAACCAAATACCTAATTTTGACCCATCAAGAATTACTT
TTATTGCCAACACTGACAAATACTCAATTGATCGAATCAAAACATCAAAT
AATATCTTGTCCAGATTGTTGGCTTGTAACTTTTCAATCGTCTCTGGAGT
ATTACCCAAATGAAGTAGCTTATATAATTGAAACATCTGGGACCACACGA
CAGGCTAAAGAAAATGGAACGAAGGCTAGAGGGGAACTAATACATGCTAC
AGGGCAGTCAATCATACCAAACATTCTAGATTTGAGTCACGTGACGTCAt
tctgctgacatcagcaatcACTTTCGATGCATCTCTCCTGCTAATGTTCT
TATCCTGGCATTCGCACTGTACGCTCTTAGTGATGTCGAGAGATGTCGTG
TACAAACCAACATCGCTCGTTCAATGTTTGGAAAAAGTCACTGTGCTTCA
GTGTACTCCATCATTCCTCCAAATGGTTGGCTCCAAACCTCTCAAAGAAC
GCATCTTCTCCGCTCAAAGTGCATTGCGCATCTTGGCTCTCGGTGGTGAA
ATGTTTTTAACGAAATCCACTTTCAACAGATATCTTCAACATGCCCCAAG
TAACTTGAgagttttcaatatttttgggatCAGTGAGCTGTCCTCTTGGG
CGTCTATTTATGAAGTCAACATAAAACGCCTTGCTAACGCCCCAAACCAC
CCTTGCGAGGGCGTATCTTGTGATTGGTTACCCATAGGAGAAGCTTTATC
AGAAACTCGTCTGGGAGTTTGGAATGATGATAACGAGGCGATTGTACCAC
CGAGAGAAGGAGTTGGAAACCTTGTTGTGGGAAGCGATACGCGACTGTGT
TATATTGAAGATGATGGAGGTGATGGAGAATATGACATGAAGTATTGCCA
GGAGAAAACTCAAGAAATGAGGTTCACTGGAGATTTGGCTTTCATCACTG
CGAATGGTCAAATATATTTGTGTGGTCGGAAAGATGATAAAATCAAACGG
ATGGGTCAGTTTGTGTCCCTTGCCACTCTCAACAAAATGGTAGAAGATAT
TCCCTTTGTAGAGCAATGTTGTACTGTGTACCATGATAGATCTTTGATCA
CATTTGTTAAACTTGCTGAAGACAACGGAGACAACACTCTCGTTGATAGT
ATCAATGATAGGCACATAAGTAATGGAGACACTGTAATCGCGACGTCCAA
AACTCGTGAAATTGAGAAAGTTGGCAACAAAGCTGAACAAAGAGTTAATT
CACCGTTGTCTAATAAAAATGTCACACTTGAAGCTGATATAAAGAGGTTT
GTCCGAAGCAAATTACCGTCCTCGTATCTCCCTGATGTCATTCAGTTAGT
TGATATTATCCCGATTAACAAAAACGGGAAATCGGATTCAAAAGTTCTTA
TCCGTGATTACCTAAATCGGAAAAAGGGAAATAGTACGGAGAATAGTAGT
ATCAGAAGTTCTTTAGAGGATATTTATTGCCTAGCTTTGAATCTAGGATC
TAATGTTCTGGAGAAAAACGACACGACTTTTGCTGAGCTTGGTGGAGATT
CGTTTGCTGCTTTGTATGTGGTAAATACCCTTGTTTATCAATATTTCCAA
ACTGAAATTGATGGCAATCTCTACGAGgagattttcaacaaaattttaac
ATTAAATTATCGAGACTTTTATGAATATTTCGAACAACTGACTGATTCAT
TTACTTTAGTGGAACTGATGAATGGTGACGAAATCGGCACTTTAAATGAT
AACTCACCAACTTCCAATAGTGTAATTCCAGAGAGCCGTAAAGAAATATC
GAATCGTAAAAATGGAGAATCTCTTCAACACCAGTTATCAGTTACTGAAA
AGAATCAGTTTTACGCTATCACGAGTCAAAATAAAGTTTTCTGTTCTGAT
ACTCTGGTGGAAAGTGAAATTCAAATTCCATCCAGCAAGACTATCACACC
TGATCCAACAAATCTTACCAATTTTCCCATTAAAGACAAACACAATCCTT
GTATCAACCTAAAAGTTAAACGTAAACACAATCTTGGCAAATGTATTGAT
GCTTCCCCATTGGTTGTTTATAGTCACGTGTTGGACGAACCTCTCGTACT
GATTGGTTGCCATTCAAAACGATTCGTTGCCTTGACGACTGAAGGTGTTT
TGAAATGGGAATTGGAAACGAATGGTCGTATTGAATCTTCGGCAACGTTG
ACTGCAGATGGACGATTCTGTGTTTTCGGCTGTCACGATGGTTTTATTTA
TTTCGTCGACATCAAATCAGGCGAAAATTATTGGAAATACAAAACAAACG
ACATTGTCAAATCTTCACCAGTGTCTTACAATACTACATCCACAAACGGC
TACGAATACTGTGTCACTAGCATTGCTTGTCACGACAAATTTCTTTACTC
GTTGGATCATATCAACAAAAAGGTCTTGTGGAAAGTACCTACAAACAGTC
TTTGTTGCTCTTCACCGCTTGTCAATCCAACGGAGAACACTTTATACGTC
ACTCTGTTGTCAGGTAAGTTGACCGCTTTCGATAGCGTGTCAGGACGGAA
AAAATGGGAGTTTAATACAGGTAAACCTATATTTACTTCACCTACGTTTA
GTCGCTCCAAAACTCAAATCGTATTCGGATGCGTGGACAACGTCTTGTAT
TGCGTGAGTTCGGAAGACGGTAACCTCGtttggaaatttgaatcagagGG
TCATATTTTCTCGTCACCCATCTGCGTAAAACACCCTCGAAATCCAGACG
TGGAATGCATATGTTTTTGCTCCAATGATGGTTCACTATACGTACTAAAC
GATACAGGAGAtttgatttggaaaactttACCATGTCCGACAACTATTGT
TAGCAGTCCCGCTGTTTTGTATGTCTGGTGCTATAAAAGACTACGGAAAC
GCCATCTTGCGGACATCATCGATAAACATCATGACAAGAGCGGGAAGAAC
CTTTCGGCAACGGATTATGAAAGCACGAGTAAGTCTTTGAAACGAGGCGA
CACAGAGTCATCGAAACAAGATTTGAAGCAAACCAAAGAGTCATCATCGG
AACAAGATAACGAaaacttcaaaaacttcaacaaGTTTTTGACTTCAGGC
TCAAAGATATTGAACACACTATCAAAAGAATGCAGTGTAGGATCAAAGGC
CATTACAATATCGTCATCAGATGACCTGATAGTACCGCTTCTTTTTTCAG
TTACTACAAAAGGGGAATTCAATATGTATGATCTGGAGACAGGTAAGCGA
GTCGAGATCACTGGATTGTTGAAATGTGAAGGAGAAGTTTTCTCATCTCC
TGTTGTTATTGGTAACAGAATTGTTGTCGGTTGTAGAGATGATTTTCTAT
ATTTTATTGACGTTTCTTAATACACACAATGACggtgttaatttttcgaa
cttCTGGACACCGGACACATGTATCAAAAATAATGCACACTGTTCGTAAA
GTCCGGTTCGTCGGCAGGTTCGTACACAATGTTGTTTATGGATATTTTTC
AGGTTCGGTTAAGTTACATGATTCTAGCCATTATGTTTCTTAATGTATAC
CATATTGTCTTTCTTTTGGCACTTTGGTTCTCAAAAGAATGCTTTCATCC
TTTAGTTGCTTGAAAATCAACAATCCCAGTTTCTGCTTTGTTCTCAGttt
gtcttatttttttgacgaatttgAGTCACGTTGTTCTTACGAAATTGTTc
ccataaaaaaacttttaaggtACGAGTAAAGAAGTTGGGTAAAATAAAAG
TTTGATATTAATTAAGTTTATATCAAAGTCCATTCCAAAATTATTATGAT
ACTCTTCGCCTTTGGAATAGTTTGTTACAATGTTAGTTTTCAAAACTTGT
TTTATACAGAGAAAACCCCATAAAACCTGACGTTGAAACTTCCCACACTC
GTCACTTCTCAAAAATCCTGTGAACTTTCACCGCTCCTATCAATAAGGGA
AAGTAACAGTGTACCGCTATTTCCTTCATCATCTTTGTGAAGTAGTATTG
TTTACTGAGAAACCTTCTCTTAATTAGTTAATGATGGTTGAGCAGTCTCA
TTAGTAATTACTACATACAACGTAATTGAATTATGCACAGCGATAACGAA
TTACGGagtaatcaaaatttttttagttGTTGGGATTTTTAAACTTACTC
GATATTGTGTAcataaaattggtaaaatgctgTTGAAGTTTTAGATGTCG
GAGAAGGAGTATTATTAAAGTATATCGTATTAGGACTTGCTCTTTCTGTT
AAGTTTGTTTTTGGGGAATGTTCATTTTATTGTGGTTTGCATTGCTCATT
TTGATTGAAGCAACTGTTCACTTGAGCTGCAATCTTAATTTGTATATTCA
TGAATTATAAAGGatgtttgaattttgaaaaaaaactcaggttttaagaa
ttttcaagccaatgaattgaaatttaaaagcAAAAGAATTTTATTTCCTA
GTTTGCTCTACTCATTTTTATCTTCTCAGTATTACTCGATATTTTTTACC
TAGatattattttctattttttgttaTATTAATTTTTTATGTCTACGTTA
TTTTTCTCTTGGCTTTTCCCCGggtgatattttgaaatattgtatGTTGT
ATGACGTGGAGTAGTTGGGGGTTGATCTCTAGTGGGCTTATCTAGATGGT
GGTTTATTTAGAGGTACAAGGATGTGTCAA
Run BLAST on NCBI

transcript from alignment at sc0000726:113307..120984-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029151 ID=TCONS_00029151|Name=TCONS_00029151|organism=Clytia hemisphaerica|type=transcript|length=7678bp|location=Sequence derived from alignment at sc0000726:113307..120984- (Clytia hemisphaerica)
GTGAAAATAGTATAAAAGGATGAAGAATAACAAATTAAAAACATTGAAAT
AATGGCAAGATATGATGATTCAGCATACAATGGAAAGCGTTCTTTGAGAA
GCATATTACAAATTGAATCATCAGATACGATTGCTATACAATATTATGAT
ACAAATGAGAGTGAGAGCAAAAATATCACCTACAACGAATTCATTCGAAT
ATCCAATGCCATACAAAAGGAATTATCAACTTTGGTTAAACCTTGCATAA
GTGATGGTGATTCGCGCATTTGTCTTGGGATATCGAGCCAACCAACACCT
CATTTACCCATATTAGTGTACTCGATTATCCAAACTGGTAATTTGGTCTT
AAGACCAGTGTTTATAACTACTGACACCTTTGAAGGTTTGATTATGGAAT
TTTTACGAACTCGAACCAAATACCTAATTTTGACCCATCAAGAATTACTT
TTATTGCCAACACTGACAAATACTCAATTGATCGAATCAAAACATCAAAT
AATATCTTGTCCAGATTGTTGGCTTGTAACTTTTCAATCGTCTCTGGAGT
ATTACCCAAATGAAGTAGCTTATATAATTGAAACATCTGGGACCACACGA
CAGGCTAAAGAAAATGGAACGAAGGCTAGAGGGGAACTAATACATGCTAC
AGGGCAGTCAATCATACCAAACATTCTAGATTTGAGGTAAGTTTTTTGTA
TATTAAACATGGCCAGATTATAATTTCGATACGCTTTTAACTGTCAAGGA
ACCGTCATCAAAATCAAACCCTAATTTACATCATTTCCCTCTTGTTTGCA
GATCTTTTTTGCACGTTCAGTCTTTTAGAATCTAGAATTTTTTTAACTTT
TATTTGAACCAGGAAAATATAAAACTTTCTCGTCTTAGACACTAAATAAA
TCTCTCCTAGCAACGAATTCTGGTAGTTTTCATAATTTCTTCATTTCATT
ATGGAAGAGGTGCGAGATTTCTGATTAATTAGGTGATAAAACATTAAACC
GGCATTTCTTCTCTATTGCTATGGACGTGGTATTCAACTATTGGTCCAAT
AAAATCACATCGAATACGAAATTAGGAGGACAAAAAATATCTATAATTTT
TAGTTCAGATATGATTTAATGTAAGGTGTCTCCCTCGTTGAGCTATTAAC
GGGCTTTGTTTTTCTATGAACTCTTTGAAATCTTCAATTCCATTTCTTTC
TCCCATAAATACAGGGCATTGTTTTCCTTACAGTCACGTGACGTCATTCT
GCTGACATCAGCAATCACTTTCGATGCATCTCTCCTGCTAATGTTCTTAT
CCTGGCATTCGCACTGTACGCTCTTAGTGATGTCGAGAGATGTCGTGTAC
AAACCAACATCGCTCGTTCAATGTTTGGAAAAAGTCACTGTGCTTCAGGT
ATAAATCACTCGTATTTTCAATGTTTTCAATTTCAAGGTTAACTTTCGGG
TATTACAAATCAATTTAGTTTCGAACAACAAAGATCGCTCAAGTTATTTA
TTCAAGATATTTCTTATAGTTCGTAGAGATAACTGACATCTCCGAACACA
CAGAAAATAAAACATTTTAAACTGCCTCGCACCTTCATGTACTGTCAGTT
TGTTCATTAATCTTGGAATAATGTAACAAAATTTACAAACAATACACGGG
TTGCAAATTAAAAAGTCTGAAGACAAATCACGCTTTTACTCGAAATTTCT
ATGTGCTCATTACATTTTTTTCTGATTGGTTTGAATTTATTGACACTAAT
AAAGTTATCAGCTGTAAGTTGTAAAGCAAGTAATGTTGGAATAAAATCAT
GTGAACTTTTTCGAGTAATCACATGTTTTGACAGCATTGATATAATTTTA
CAGCCGGTTTATTTTGTTTGAATTTACTTTGATGTTTTAGTGTACTCCAT
CATTCCTCCAAATGGTTGGCTCCAAACCTCTCAAAGAACGCATCTTCTCC
GCTCAAAGTGCATTGCGCATCTTGGCTCTCGGTGGTGAAATGTTTTTAAC
GAAATCCACTTTCAACAGATATCTTCAACATGCCCCAAGTAACTTGAGAG
TTTTCAATATTTTTGGGATCAGTGAGCTGTCCTCTTGGGCGTCTATTTAT
GAAGTCAACATAAAACGCCTTGCTAACGCCCCAAACCACCCTTGCGAGGG
CGTATCTTGTGATTGGTTACCCATAGGAGAAGCTTTATCAGAAACTCGTC
TGGGAGTTTGGAATGATGATAACGAGGCGATTGTACCACCGAGAGAAGGA
GTTGGAAACCTTGTTGTGGGTAAGACTTTATTTTAAGTGATTTGTAAGTT
AATACAGTTTTGAAGATCTTCCGTTCCAGTGAAGTATATAAGGAGGCTTT
TCCGTCTCAAAATTCTGCATGATTCACTAAACATTCAAGAATATGTACTT
ATATTTTGCTGTATAAAATCGACATTTTCCGTCTCATACGAAAAACCTTG
CTTCGACCACTGTCAAAGAAACTTCAAACCCCAATCCATATTAAGAGCTT
TTATGCTTGGTGGTTGTCTCGTCAAAAATGCACCCACGCATAATTTAGCT
CATATGTACCGAAATTTATGAAAAGTCTATTAGCCAACGACTTTTAATTT
AGCCAGGATTCGGTAATTTATTGAACGCATAGGCCCGAGAAAGTGTTTCT
ATAAACTGTTCTTTCTCTCTACATTTTCCTATCAGGAAGCGATACGCGAC
TGTGTTATATTGAAGATGATGGAGGTGATGGAGAATATGACATGAAGTAT
TGCCAGGAGAAAACTCAAGGTAAGGAAAGAATACATTCGACTTTCTATCA
GATAACCACTACAAAGGAATCTGATTGAATAGGTTTGAAGATTAACAAGC
TGTCACCACATTCCCAGATTTTTATCAACAATTTCGGTTATGATGTCCTG
CATGATGTCTTTTATATATAAATAAATTAGGGATTTCTATAGGTACCTCT
TGATCAGTGAAAACTTTTTTTAAACAGAAGAACTGCATAACTACTAGAGT
CAGAAAGATAAAGTATAAGAAAGACGTGTTAATTTCATTTTCTTTTTTTA
TAAATCACCAGAAATGAGGTTCACTGGAGATTTGGCTTTCATCACTGCGA
ATGGTCAAATATATTTGTGTGGTCGGAAAGATGATAAAATCAAACGGATG
GGTCAGTTTGTGTCCCTTGCCACTCTCAACAAAATGGTAGAAGATATTCC
CTTTGTAGAGCAATGTTGTACTGTGTACCATGATAGATCTTTGATCACAT
TTGTTAAACTTGCTGAAGACAACGGAGACAACACTCTCGTTGATAGTATC
AATGATAGGCACATAAGTAATGGAGACACTGTAATCGCGACGTCCAAAAC
TCGTGAAATTGAGAAAGTTGGCAACAAAGCTGAACAAAGAGTTAATTCAC
CGTTGTCTAATAAAAATGTCACACTTGAAGCTGATATAAAGAGGTTTGTC
CGAAGCAAATTACCGTCCTCGTATCTCCCTGATGTCATTCAGTTAGTTGA
TATTATCCCGATTAACAAAAACGGGAAATCGGATTCAAAAGTTCTTATCC
GTGATTACCTAAATCGGAAAAAGGGAAATAGTACGGAGAATAGTAGTATC
AGAAGTTCTTTAGAGGATATTTATTGCCTAGCTTTGAATCTAGGATCTAA
TGTTCTGGAGAAAAACGACACGACTTTTGCTGAGCTTGGTGGAGATTCGT
TTGCTGCTTTGTATGTGGTAAATACCCTTGTTTATCAATATTTCCAAACT
GAAATTGATGGCAATCTCTACGAGGAGATTTTCAACAAAATTTTAACATT
AAATTATCGAGACTTTTATGAATATTTCGAACAACTGACTGATTCATTTA
CTTTAGTGGAACTGATGAATGGTGACGAAATCGGCACTTTAAATGATAAC
TCACCAACTTCCAATAGTGTAATTCCAGAGAGCCGTAAAGAAATATCGAA
TCGTAAAAATGGAGAATCTCTTCAACACCAGTTATCAGTTACTGAAAAGA
ATCAGTTTTACGCTATCACGAGTCAAAATAAAGTTTTCTGTTCTGATACT
CTGGTGGAAAGTGAAATTCAAATTCCATCCAGCAAGACTATCACACCTGA
TCCAACAAATCTTACCAATTTTCCCATTAAAGACAAACACAATCCTTGTA
TCAACCTAAAAGTTAAACGTAAACACAATCTTGGCAAATGTATTGATGCT
TCCCCATTGGTTGTTTATAGTCACGTGTTGGACGAACCTCTCGTACTGAT
TGGTTGCCATTCAAAACGATTCGTTGCCTTGACGACTGAAGGTGTTTTGA
AATGGGAATTGGAAACGAATGGTCGTATTGAATCTTCGGCAACGTTGACT
GCAGATGGACGATTCTGTGTTTTCGGTAAGTTACACCCTAGATAGGCTAA
AGGCTTACAGATTTCCTTTGGAAGTGTGTCCATTTTTGAAGTCAACTAGT
GAAGTCAACGCCATATTTTTTTCTAATTTACTTTAAATCTTCGAACGTTC
GAAGAATTAAATTTAAAGAGTATATAATAAAGCAATTTTAAGAATTAAAG
AATTTCAAAAGTTGAAAACAAGATGGCGGACTAATCAGCTCTAAAATTGG
ATACGCTCCCTTCTTTATGGAAAGCCTGATCAATTCAAGTAGTTAGAGGA
GTTGTAGTACTCTACAATGTCATAATGGTAGGAACCAAATACATGGTTTC
TCACAAGAAACCATTTATAAAAATACGAGGCTCGATTTTACCAAAACCTA
AAAAAATAAATTACCTTAAGTGGATTAATTTTCGCGTGGACAAAATTTCG
CGAATGAAAGATTGAAAATTTTCGCGTGGACTAAATTTCGCGATTTGGCC
TATTTTTTTCCTAATTTCTTTCATTTTCCTAGGGGTTTTGGCAAAAATTG
CAATTCTAAAAATTTCGCGTGGACAAAATTTCGCGAAAATGGCCAAAATA
CGCGAAAATCGCGAAAATTAATCCACGCGAAAATTAATCCACTTAAGGTA
GAACAACCTCTGATTTCGAAACAGCTGTGATTCGGTTAAAATTTACTGTT
TCATATAAAGCGTTTACCTTTACCAATAACAAACACATTCCGGATGAACT
TTCATTTCTTCTTCGAGAACCCATATTTAATAGATTGCTCTGAAGAGAAG
ATAAACAAGGAAACGATAATAGAATAATATCTGTCATGAAATTACATCAA
TCACAGTAATTCGTATGGTTTTTTAGGCTGTCACGATGGTTTTATTTATT
TCGTCGACATCAAATCAGGCGAAAATTATTGGAAATACAAAACAAACGAC
ATTGTCAAATCTTCACCAGTGTCTTACAATACTACATCCACAAACGGCTA
CGAATACTGTGTCACTAGCATTGCTTGTCACGACAAATTTCTTTACTCGT
TGGATCATATCAACAAAAAGGTCTTGTGGAAAGTACCTACAAACAGTCTT
TGTTGCTCTTCACCGCTTGTCAATCCAACGGAGAACACTTTATACGTCAC
TCTGTTGTCAGGTAAGTTGACCGCTTTCGATAGCGTGTCAGGACGGAAAA
AATGGGAGTTTAATACAGGTAAACCTATATTTACTTCACCTACGTTTAGT
CGCTCCAAAACTCAAATCGTATTCGGATGCGTGGACAACGTCTTGTATTG
CGTGAGTTCGGAAGACGGTAACCTCGTTTGGAAATTTGAATCAGAGGGTC
ATATTTTCTCGTCACCCATCTGCGTAAAACACCCTCGAAATCCAGACGTG
GAATGCATATGTTTTTGCTCCAATGATGGTTCACTATACGTACTAAACGA
TACAGGAGATTTGATTTGGAAAACTTTACCATGTCCGACAACTATTGTTA
GCAGTCCCGCTGTTTTGTATGTCTGGTGCTATAAAAGACTACGGAAACGC
CATCTTGCGGACATCATCGATAAACATCATGACAAGAGCGGGAAGAACCT
TTCGGCAACGGATTATGAAAGCACGAGTAAGTCTTTGAAACGAGGCGACA
CAGAGTCATCGAAACAAGATTTGAAGCAAACCAAAGAGTCATCATCGGAA
CAAGATAACGAAAACTTCAAAAACTTCAACAAGTTTTTGACTTCAGGCTC
AAAGATATTGAACACACTATCAAAAGAATGCAGTGTAGGATCAAAGGCCA
TTACAATATCGTCATCAGATGACCTGATAGTACCGCTTCTTTTTTCAGTT
ACTACAAAAGGGGAATTCAATATGTATGATCTGGAGACAGGTAAGCGAGT
CGAGATCACTGGATTGTTGAAATGTGAAGGAGAAGTTTTCTCATCTCCTG
TTGTTATTGGTAACAGAATTGTTGTCGGTTGTAGAGATGATTTTCTATAT
TTTATTGACGTTTCTTAATACACACAATGACGGTGTTAATTTTTCGAACT
TCTGGACACCGGACACATGTATCAAAAATAATGCACACTGTTCGTAAAGT
CCGGTTCGTCGGCAGGTTCGTACACAATGTTGTTTATGGATATTTTTCAG
GTTCGGTTAAGTTACATGATTCTAGCCATTATGTTTCTTAATGTATACCA
TATTGTCTTTCTTTTGGCACTTTGGTTCTCAAAAGAATGCTTTCATCCTT
TAGTTGCTTGAAAATCAACAATCCCAGTTTCTGCTTTGTTCTCAGTTTGT
CTTATTTTTTTGACGAATTTGAGTCACGTTGTTCTTACGAAATTGTTCCC
ATAAAAAAACTTTTAAGGTACGAGTAAAGAAGTTGGGTAAAATAAAAGTT
TGATATTAATTAAGTTTATATCAAAGTCCATTCCAAAATTATTATGATAC
TCTTCGCCTTTGGAATAGTTTGTTACAATGTTAGTTTTCAAAACTTGTTT
TATACAGAGAAAACCCCATAAAACCTGACGTTGAAACTTCCCACACTCGT
CACTTCTCAAAAATCCTGTGAACTTTCACCGCTCCTATCAATAAGGGAAA
GTAACAGTGTACCGCTATTTCCTTCATCATCTTTGTGAAGTAGTATTGTT
TACTGAGAAACCTTCTCTTAATTAGTTAATGATGGTTGAGCAGTCTCATT
AGTAATTACTACATACAACGTAATTGAATTATGCACAGCGATAACGAATT
ACGGAGTAATCAAAATTTTTTTAGTTGTTGGGATTTTTAAACTTACTCGA
TATTGTGTACATAAAATTGGTAAAATGCTGTTGAAGTTTTAGATGTCGGA
GAAGGAGTATTATTAAAGTATATCGTATTAGGACTTGCTCTTTCTGTTAA
GTTTGTTTTTGGGGAATGTTCATTTTATTGTGGTTTGCATTGCTCATTTT
GATTGAAGCAACTGTTCACTTGAGCTGCAATCTTAATTTGTATATTCATG
AATTATAAAGGATGTTTGAATTTTGAAAAAAAACTCAGGTTTTAAGAATT
TTCAAGCCAATGAATTGAAATTTAAAAGCAAAAGAATTTTATTTCCTAGT
TTGCTCTACTCATTTTTATCTTCTCAGTATTACTCGATATTTTTTACCTA
GATATTATTTTCTATTTTTTGTTATATTAATTTTTTATGTCTACGTTATT
TTTCTCTTGGCTTTTCCCCGGGTGATATTTTGAAATATTGTATGTTGTAT
GACGTGGAGTAGTTGGGGGTTGATCTCTAGTGGGCTTATCTAGATGGTGG
TTTATTTAGAGGTACAAGGATGTGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016582XLOC_016582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029151-exon-sc0000726-1575043694:120299..120984TCONS_00029151-exon-sc0000726-1575043694:120299..120984Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1575043694:119587..119751TCONS_00029151-exon-sc0000726-1575043694:119587..119751Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1575043694:118716..119094TCONS_00029151-exon-sc0000726-1575043694:118716..119094Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1575043694:118216..118299TCONS_00029151-exon-sc0000726-1575043694:118216..118299Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1575043694:116610..117923TCONS_00029151-exon-sc0000726-1575043694:116610..117923Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1575043694:113307..115758TCONS_00029151-exon-sc0000726-1575043694:113307..115758Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1510915933:120299..120984TCONS_00029151-exon-sc0000726-1510915933:120299..120984Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1510915933:119587..119751TCONS_00029151-exon-sc0000726-1510915933:119587..119751Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1510915933:118716..119094TCONS_00029151-exon-sc0000726-1510915933:118716..119094Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1510915933:118216..118299TCONS_00029151-exon-sc0000726-1510915933:118216..118299Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1510915933:116610..117923TCONS_00029151-exon-sc0000726-1510915933:116610..117923Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1510915933:113307..115758TCONS_00029151-exon-sc0000726-1510915933:113307..115758Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1491911889:120299..120984TCONS_00029151-exon-sc0000726-1491911889:120299..120984Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1491911889:119587..119751TCONS_00029151-exon-sc0000726-1491911889:119587..119751Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1491911889:118716..119094TCONS_00029151-exon-sc0000726-1491911889:118716..119094Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1491911889:118216..118299TCONS_00029151-exon-sc0000726-1491911889:118216..118299Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1491911889:116610..117923TCONS_00029151-exon-sc0000726-1491911889:116610..117923Clytia hemisphaericaexon
TCONS_00029151-exon-sc0000726-1491911889:113307..115758TCONS_00029151-exon-sc0000726-1491911889:113307..115758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000726supercontigsc0000726:113307..120984 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28063	1.14214	0.490622	0.500369	2.25193	1.84563	3.058	2.15216	1.67626	2.24394	2.16115	1.83692	1.5851	2.04167	1.45259	2.03538	2.62436	2.28085	1.56689	1.9001	2.8013	1.92831	1.83055	1.53259	1.79157	2.44905	1.68958	0.743808	1.613	1.08905
Blast
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BLAST of TCONS_00029151 vs. Swiss-Prot (Human)
Match: ACSF4 (Acyl-CoA synthetase family member 4 OS=Homo sapiens GN=AASDH PE=1 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 4.504e-81
Identity = 259/892 (29.04%), Postives = 410/892 (45.96%), Query Frame = 3 
Query:  690 RDVILLTSAITFDASLLLMFLSWHSHCTLLVMSRDVVYKPTSLVQCL---EKVTVLQCTPSFLQMVGSKPLKERIFSAQSALRILALGGEMFLTKSTFNRYLQHAPSNLRVFNIFGISELSSWASIYEVNIKRLANAPNHPCEGVSCDWLPIGEALSETRLGVWNDDNEAIVPPREGVGNLVVGSDTRLCYIEXXXXXXEYDMKYCQEKTQEMRFTGDLAFITA-NGQIYLCGRKDDKIKRMGQFVSLATLNKMVEDIPFVEQCC-TVYHDRSLITFVKLAEDNGDNTLVDSINDRHISNGDTVIATSKTREIEKVGNKAEQRVNSPLSNKNVTLEADIKRFVRSKLPSSYLPDVIQLVDIIPINKNGKSDSKVLIRDYLN----RKKGNSTENSSIRSSLEDIYCLALNLGSNVLEKND-TTFAELGGDSFAALYVVNTLVYQYFQTEIDGNLYEEIFNKILTLNYRDFYEYFEQLTDSFTLVELMNGDEIGTLNDNSPTSNSVIPESRKEISNRKNGESLQHQLSVT-----EKNQFYAITSQNKVFC------------------SDTLVESEIQ------IPSSKTITPDPTNLTNFPIKDKHNPCIN-----LKVKRKHNLGKCIDASPLVVYSHVLDEP--LVLIGCHSKRFVALT-TEGVLKWELETNGRIESSATLTADGRFCVFGCHDGFIYFVDIKSGENYWKYKTNDIVKSSPVSYNTTSTNGYEYCVTSIACHDKFLYSLDHINKKVLWKVPTNSLCCSSPLVNPTENTLYVTLLSGKLTAFDSVSGRKKWEFNTGKPIFTSPTFSRSKTQIVFGCVDNVLYCVSSEDGNLVWKFESEGHIFSSPICVKHPRNPDVECICFCSNDGSLYVLNDTGDLIWK 3224
             DV+ L S +TFD S++ +FL+  S  +LL++   V   P+ L   L    +VTVLQ TP+ L+  GS+ +K  + SA ++LR+LALGGE F + +   R  +   +  ++FN++GI+E+SSWA+IY +  K L +     CE       P+   + E R     D N   +  +EG G + +G   R+C+++D+                 MR TGD  F+T  +G+I+  GRKD +IKR G+ +++  + ++ E++  VE C  T Y+   LI F                                                  + +K+ +++  I + ++  LPS  +PD + L+D +P   +GK D   L + YLN    + +   +    +   L+ ++   LNL  ++L   D + F   GGDS  ++ +++  + +   T + G     +   IL+ +  + Y +  Q     T+V     DE  T   +  T   +   +++E S    G SL  +  +T     E N F  ++  +++                    SD++ ++ IQ       P     + DP+ +    + ++  P I      L V+ + + GKC+DASPLVV     D+    V IG HS R  A+    G +KWE     RIESSA ++  G F V GC++G +Y +   SGE YW + T D VKSS     TT   G  Y    I  HD+  Y+LD   KK +WK        SSP +N   + LY   L G L A +  +G   W+ + GKP+F+SP        I  GCVD  L C  +  G  VW+F + G IFSSP       +P  + I F S+D  +Y  N  G L WK
Sbjct:  231 EDVLFLASPLTFDPSVVEIFLALSSGASLLIVPTSVKLLPSKLASVLFSHHRVTVLQATPTLLRRFGSQLIKSTVLSATTSLRVLALGGEAFPSLTVL-RSWRGEGNKTQIFNVYGITEVSSWATIYRIPEKTLNSTLK--CELPVQLGFPLLGTVVEVR-----DTNGFTI--QEGSGQVFLGGRNRVCFLDDEVTV----------PLGTMRATGD--FVTVKDGEIFFLGRKDSQIKRHGKRLNIELVQQVAEELQQVESCAVTWYNQEKLILF--------------------------------------------------MVSKDASVKEYIFKELQKYLPSHAVPDELVLIDSLPFTSHGKIDVSELNKIYLNYINLKSENKLSGKEDLWEKLQYLWKSTLNLPEDLLRVPDESLFLNSGGDSLKSIRLLSE-IEKLVGTSVPG-----LLEIILSSSILEIYNHILQ-----TVVP----DEDVTFRKSCATKRKLSDINQEEAS----GTSLHQKAIMTFTCHNEINAFVVLSRGSQILSLNSTRFLTKLGHCSSACPSDSVSQTNIQNLKGLNSPVLIGKSKDPSCVAK--VSEEGKPAIGTQKMELHVRWRSDTGKCVDASPLVVIP-TFDKSSTTVYIGSHSHRMKAVDFYSGKVKWEQILGDRIESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFTTEDAVKSSATMDPTT---GLIY----IGSHDQHAYALDIYRKKCVWKSKCGGTVFSSPCLNLIPHHLYFATLGGLLLAVNPATGNVIWKHSCGKPLFSSPQCCSQ--YICIGCVDGNLLCF-THFGEQVWQFSTSGPIFSSPC-----TSPSEQKIFFGSHDCFIYCCNMKGHLQWK 1013
The following BLAST results are available for this feature:
BLAST of TCONS_00029151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACSF44.504e-8129.04Acyl-CoA synthetase family member 4 OS=Homo sapien... [more]
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