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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029159 ID=TCONS_00029159|Name=TCONS_00029159|organism=Clytia hemisphaerica|type=transcript|length=1659bp
ATCGAGCACCCAACTGATGTGACCGTTGCCACCAACAAGAAACCCACAAC
CATGAGCCACCAACCATTCACGAAAAGTGGCTGGAAAAAGGCAAAGACAT
CCGACCATCCCAAATGTACCTTACCATTGCTATGAGGACATCTCCATCAA
AATCAACGGAGGTCACTGCTGTTGCAGATACAGGCGCCCAATCCAACCTG
TGGGCTTTGAATAACTTTCTTAAAGCAGGCTACAAGTTATCTGACCTATC
ACCCGTTTCGCTTTCCCTTAACGCAGCAAACAAGTCTCCTATTCATATAG
AAGGCGCATTCCGTGCCACTTTTACAGGACAATCCCTTAACGGGAGAAAA
GTACTATCTCATTCAGTTGTGTATGTGAGCCGTGATGTCACAACGCTATA
CCTATCATATGATACGATGGTTGATCTCGGAATCGTTAACCGCGACTTCC
CTCGAATTGGACAGTACTCTGCTAACTCAAAAGCTGAGCAGGTACCACTT
TCAACAATCCAAGACGCAAGTATATGTGGAGTGTCAAACGTTGATGGAAG
TCTATGTCAATGCCCAAAACGCACAGCAGTCCCTACACGTCCGAAAGTCC
TTCCGTTTCCGTGTACGCcagacaacaacaacaaaatgcgTAAATGGCTG
CTCGAGACTTATGGTAGCACCTCTTTCAACACGTGTCCCCATCAAACGTT
GCCTTCCATGGATGGACCACCAGTCGAAATACACATGAGAGATGATGCCA
TCCCCGTTGCACGTCACAAGGCAATCCCAGTTCCGCTACACTGGCAAGAG
CAGGTACACAAAGACCTACTGCGAGATGAGTCCCTCGGCGTAATAGAGAG
AGTCCCGATCGGAGAGCCTGTGGAATGGTGTCATCATATGGTCATTACCC
GGAAACCTGATGGCACACCAAGACGAACCGTTGACTTGTCCCCACTCAAC
AAATGGTGCAAAAGAGAGACCCACAATTCAGAATCGCCCTTCCACCTCGC
CAGAAAAATTCCCCGCAACACCTGGAAAACCGTTACCGACGCGTGGAATG
GTTTTCACAGCGTGCCACTCCGTGAATCAGATCGACGCCTAACAACCTTT
ATCACGCCCTTTGGACGCTGGCGATACAAGAGAGCACCCCAAGGATTTCT
GTCTTCTGGAGACGGATACAATCGCCGATTCGAAGCCGTCTTAGCTGATA
TCCAACGTAAAGAAAGAATTACCGACGACACCCTTATCTACGACAACGAC
CTTGAAGAGCATTGGTGgcgaacaatagattttctaacGACTGTCGGCAG
AGCTGGTATCGTCCTGAATCCTCTAAAATTTCAGTTTGCTGGTAGATCAG
TTGACTTTGCAGGCTTCCGCATAACAGACGACAGAATTGAGCCCCTTCCC
AAGTACTACAACGCCATACAGAACTTCCCAACACCTTCGAGTACAACCGA
CATCAGAAGCTGGTTCGGCCTTATCAATCAAGTTGGGAACTATGCACAAC
TTCGCGAACACATGGAGCCCTTCCGCCCCTTCTTGTCACCAAAGCATCCA
TTCAAATGGACACCAGAGCTTGACCATGCCTTCCGAGCATCCAAAAACGC
AATCGTTGAAGCAATCAAGTCTGGAGTAGAGATTTTCGACCTCAACCGTA
CCACATGCC Run BLAST on NCBI protein sequence of TCONS_00029159-protein >TCONS_00029159-protein ID=TCONS_00029159-protein|Name=TCONS_00029159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MYLTIAMRTSPSKSTEVTAVADTGAQSNLWALNNFLKAGYKLSDLSPVSL
SLNAANKSPIHIEGAFRATFTGQSLNGRKVLSHSVVYVSRDVTTLYLSYD
TMVDLGIVNRDFPRIGQYSANSKAEQVPLSTIQDASICGVSNVDGSLCQC
PKRTAVPTRPKVLPFPCTPDNNNKMRKWLLETYGSTSFNTCPHQTLPSMD
GPPVEIHMRDDAIPVARHKAIPVPLHWQEQVHKDLLRDESLGVIERVPIG
EPVEWCHHMVITRKPDGTPRRTVDLSPLNKWCKRETHNSESPFHLARKIP
RNTWKTVTDAWNGFHSVPLRESDRRLTTFITPFGRWRYKRAPQGFLSSGD
GYNRRFEAVLADIQRKERITDDTLIYDNDLEEHWWRTIDFLTTVGRAGIV
LNPLKFQFAGRSVDFAGFRITDDRIEPLPKYYNAIQNFPTPSSTTDIRSW
FGLINQVGNYAQLREHMEPFRPFLSPKHPFKWTPELDHAFRASKNAIVEA
IKSGVEIFDLNRTTC Run BLAST on NCBI transcript from alignment at sc0000726:49898..51556 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029159 ID=TCONS_00029159|Name=TCONS_00029159|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at sc0000726:49898..51556 (Clytia hemisphaerica)
GGCATGTGGTACGGTTGAGGTCGAAAATCTCTACTCCAGACTTGATTGCT
TCAACGATTGCGTTTTTGGATGCTCGGAAGGCATGGTCAAGCTCTGGTGT
CCATTTGAATGGATGCTTTGGTGACAAGAAGGGGCGGAAGGGCTCCATGT
GTTCGCGAAGTTGTGCATAGTTCCCAACTTGATTGATAAGGCCGAACCAG
CTTCTGATGTCGGTTGTACTCGAAGGTGTTGGGAAGTTCTGTATGGCGTT
GTAGTACTTGGGAAGGGGCTCAATTCTGTCGTCTGTTATGCGGAAGCCTG
CAAAGTCAACTGATCTACCAGCAAACTGAAATTTTAGAGGATTCAGGACG
ATACCAGCTCTGCCGACAGTCgttagaaaatctattgttcgcCACCAATG
CTCTTCAAGGTCGTTGTCGTAGATAAGGGTGTCGTCGGTAATTCTTTCTT
TACGTTGGATATCAGCTAAGACGGCTTCGAATCGGCGATTGTATCCGTCT
CCAGAAGACAGAAATCCTTGGGGTGCTCTCTTGTATCGCCAGCGTCCAAA
GGGCGTGATAAAGGTTGTTAGGCGTCGATCTGATTCACGGAGTGGCACGC
TGTGAAAACCATTCCACGCGTCGGTAACGGTTTTCCAGGTGTTGCGGGGA
ATTTTTCTGGCGAGGTGGAAGGGCGATTCTGAATTGTGGGTCTCTCTTTT
GCACCATTTGTTGAGTGGGGACAAGTCAACGGTTCGTCTTGGTGTGCCAT
CAGGTTTCCGGGTAATGACCATATGATGACACCATTCCACAGGCTCTCCG
ATCGGGACTCTCTCTATTACGCCGAGGGACTCATCTCGCAGTAGGTCTTT
GTGTACCTGCTCTTGCCAGTGTAGCGGAACTGGGATTGCCTTGTGACGTG
CAACGGGGATGGCATCATCTCTCATGTGTATTTCGACTGGTGGTCCATCC
ATGGAAGGCAACGTTTGATGGGGACACGTGTTGAAAGAGGTGCTACCATA
AGTCTCGAGCAGCCATTTAcgcattttgttgttgttgtctgGCGTACACG
GAAACGGAAGGACTTTCGGACGTGTAGGGACTGCTGTGCGTTTTGGGCAT
TGACATAGACTTCCATCAACGTTTGACACTCCACATATACTTGCGTCTTG
GATTGTTGAAAGTGGTACCTGCTCAGCTTTTGAGTTAGCAGAGTACTGTC
CAATTCGAGGGAAGTCGCGGTTAACGATTCCGAGATCAACCATCGTATCA
TATGATAGGTATAGCGTTGTGACATCACGGCTCACATACACAACTGAATG
AGATAGTACTTTTCTCCCGTTAAGGGATTGTCCTGTAAAAGTGGCACGGA
ATGCGCCTTCTATATGAATAGGAGACTTGTTTGCTGCGTTAAGGGAAAGC
GAAACGGGTGATAGGTCAGATAACTTGTAGCCTGCTTTAAGAAAGTTATT
CAAAGCCCACAGGTTGGATTGGGCGCCTGTATCTGCAACAGCAGTGACCT
CCGTTGATTTTGATGGAGATGTCCTCATAGCAATGGTAAGGTACATTTGG
GATGGTCGGATGTCTTTGCCTTTTTCCAGCCACTTTTCGTGAATGGTTGG
TGGCTCATGGTTGTGGGTTTCTTGTTGGTGGCAACGGTCACATCAGTTGG
GTGCTCGAT Coding sequence (CDS) from alignment at sc0000726:49898..51556 >TCONS_00029159 ID=TCONS_00029159|Name=TCONS_00029159|organism=Clytia hemisphaerica|type=CDS|length=1545bp|location=Sequence derived from alignment at sc0000726:49898..51556 (Clytia hemisphaerica)
GCATGTGGTACGGTTGAGGTCGAAAATCTCTACTCCAGACTTGATTGCTT
CAACGATTGCGTTTTTGGATGCTCGGAAGGCATGGTCAAGCTCTGGTGTC
CATTTGAATGGATGCTTTGGTGACAAGAAGGGGCGGAAGGGCTCCATGTG
TTCGCGAAGTTGTGCATAGTTCCCAACTTGATTGATAAGGCCGAACCAGC
TTCTGATGTCGGTTGTACTCGAAGGTGTTGGGAAGTTCTGTATGGCGTTG
TAGTACTTGGGAAGGGGCTCAATTCTGTCGTCTGTTATGCGGAAGCCTGC
AAAGTCAACTGATCTACCAGCAAACTGAAATTTTAGAGGATTCAGGACGA
TACCAGCTCTGCCGACAGTCgttagaaaatctattgttcgcCACCAATGC
TCTTCAAGGTCGTTGTCGTAGATAAGGGTGTCGTCGGTAATTCTTTCTTT
ACGTTGGATATCAGCTAAGACGGCTTCGAATCGGCGATTGTATCCGTCTC
CAGAAGACAGAAATCCTTGGGGTGCTCTCTTGTATCGCCAGCGTCCAAAG
GGCGTGATAAAGGTTGTTAGGCGTCGATCTGATTCACGGAGTGGCACGCT
GTGAAAACCATTCCACGCGTCGGTAACGGTTTTCCAGGTGTTGCGGGGAA
TTTTTCTGGCGAGGTGGAAGGGCGATTCTGAATTGTGGGTCTCTCTTTTG
CACCATTTGTTGAGTGGGGACAAGTCAACGGTTCGTCTTGGTGTGCCATC
AGGTTTCCGGGTAATGACCATATGATGACACCATTCCACAGGCTCTCCGA
TCGGGACTCTCTCTATTACGCCGAGGGACTCATCTCGCAGTAGGTCTTTG
TGTACCTGCTCTTGCCAGTGTAGCGGAACTGGGATTGCCTTGTGACGTGC
AACGGGGATGGCATCATCTCTCATGTGTATTTCGACTGGTGGTCCATCCA
TGGAAGGCAACGTTTGATGGGGACACGTGTTGAAAGAGGTGCTACCATAA
GTCTCGAGCAGCCATTTAcgcattttgttgttgttgtctgGCGTACACGG
AAACGGAAGGACTTTCGGACGTGTAGGGACTGCTGTGCGTTTTGGGCATT
GACATAGACTTCCATCAACGTTTGACACTCCACATATACTTGCGTCTTGG
ATTGTTGAAAGTGGTACCTGCTCAGCTTTTGAGTTAGCAGAGTACTGTCC
AATTCGAGGGAAGTCGCGGTTAACGATTCCGAGATCAACCATCGTATCAT
ATGATAGGTATAGCGTTGTGACATCACGGCTCACATACACAACTGAATGA
GATAGTACTTTTCTCCCGTTAAGGGATTGTCCTGTAAAAGTGGCACGGAA
TGCGCCTTCTATATGAATAGGAGACTTGTTTGCTGCGTTAAGGGAAAGCG
AAACGGGTGATAGGTCAGATAACTTGTAGCCTGCTTTAAGAAAGTTATTC
AAAGCCCACAGGTTGGATTGGGCGCCTGTATCTGCAACAGCAGTGACCTC
CGTTGATTTTGATGGAGATGTCCTCATAGCAATGGTAAGGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029159-exon-sc0000726-1491911889:49898..51556 | TCONS_00029159-exon-sc0000726-1491911889:49898..51556 | Clytia hemisphaerica | exon |
| TCONS_00029159-exon-sc0000726-1510915933:49898..51556 | TCONS_00029159-exon-sc0000726-1510915933:49898..51556 | Clytia hemisphaerica | exon |
| TCONS_00029159-exon-sc0000726-1575043694:49898..51556 | TCONS_00029159-exon-sc0000726-1575043694:49898..51556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000726 | supercontig | sc0000726:49898..51556 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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