TCONS_00029168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029168
Unique NameTCONS_00029168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029168 ID=TCONS_00029168|Name=TCONS_00029168|organism=Clytia hemisphaerica|type=transcript|length=968bp
AAAGTacattaagagccattttttaaaaaaatcttcagaataaagaaagt
gtgatatCCACCCTCttatagattttgatgaaattttgaccaaatgatct
atcacaaaGAAAATAagtccctgaaaatttcaccttgatatctcacgtag
ttttgaagatacagcgtctcaaagataggctactaagcgaaaattgaccc
ctaaatttgGAAACTTGACAGCACCAGTCATCTTGTTTTATAGAATGGTT
GACAgaatagaaaagaacattttgtATGAAGATTTTGTTGCACAACATTT
AAAAGAGAATAAACCTTGCATTTTCTCGTCTAATTTAATCGCTGATTGGA
AATGTGTAAACAGTTGGGTGAAAAGTGATCATCTCAATactgattttatt
gaaaagcatTTTGGAAACTTGACAGCGCCAGTGATGGATTGCAATAAACA
ATATTTCTCATCACATGAAAAGGAAGATATGAAGGTATCAGAATTTATCA
AATATTGGAATGATCGTGATGATAGATTACTTTATTTGAAAGACTGGCAT
TTACAAAAGCTAACTGATGAAAGGTTTTATGACATTCCCACTTTTTTCAC
TTCTGACTGGCTAAATGAATACTTTGACAGAGATGGCAAAGACGACTACA
GGTTTGTTTACATTGGAGTTAAAGGAAGCTGGACTTCATTTCACGCTGAT
GTCTTTCGTTCATATAGCTGGTCAGCCAACATATGTGGTCTAAAGAAATG
GATATTCTTTCCGCCTGGAGAAGAAGATAAATTGAGAGACAATTTTGGAA
ATCTCCCCTTTGATGTTTCTTCATTGTCCCTAGACGAAATGGACATAACT
TATTTCGTAACTTTCCAAAAGTCTGGTGAAGTAATTTTTGTTCCTAGTGG
TTGGCATCATCAGGTATTTAATTTGGAAGACACTGTCTCCATCAATCATA
ATTGGGTTAATGCtttca
Run BLAST on NCBI

transcript from alignment at sc0000727:65179..66146+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029168 ID=TCONS_00029168|Name=TCONS_00029168|organism=Clytia hemisphaerica|type=transcript|length=968bp|location=Sequence derived from alignment at sc0000727:65179..66146+ (Clytia hemisphaerica)
AAAGTacattaagagccattttttaaaaaaatcttcagaataaagaaagt
gtgatatCCACCCTCttatagattttgatgaaattttgaccaaatgatct
atcacaaaGAAAATAagtccctgaaaatttcaccttgatatctcacgtag
ttttgaagatacagcgtctcaaagataggctactaagcgaaaattgaccc
ctaaatttgGAAACTTGACAGCACCAGTCATCTTGTTTTATAGAATGGTT
GACAgaatagaaaagaacattttgtATGAAGATTTTGTTGCACAACATTT
AAAAGAGAATAAACCTTGCATTTTCTCGTCTAATTTAATCGCTGATTGGA
AATGTGTAAACAGTTGGGTGAAAAGTGATCATCTCAATactgattttatt
gaaaagcatTTTGGAAACTTGACAGCGCCAGTGATGGATTGCAATAAACA
ATATTTCTCATCACATGAAAAGGAAGATATGAAGGTATCAGAATTTATCA
AATATTGGAATGATCGTGATGATAGATTACTTTATTTGAAAGACTGGCAT
TTACAAAAGCTAACTGATGAAAGGTTTTATGACATTCCCACTTTTTTCAC
TTCTGACTGGCTAAATGAATACTTTGACAGAGATGGCAAAGACGACTACA
GGTTTGTTTACATTGGAGTTAAAGGAAGCTGGACTTCATTTCACGCTGAT
GTCTTTCGTTCATATAGCTGGTCAGCCAACATATGTGGTCTAAAGAAATG
GATATTCTTTCCGCCTGGAGAAGAAGATAAATTGAGAGACAATTTTGGAA
ATCTCCCCTTTGATGTTTCTTCATTGTCCCTAGACGAAATGGACATAACT
TATTTCGTAACTTTCCAAAAGTCTGGTGAAGTAATTTTTGTTCCTAGTGG
TTGGCATCATCAGGTATTTAATTTGGAAGACACTGTCTCCATCAATCATA
ATTGGGTTAATGCtttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016595XLOC_016595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029168-exon-sc0000727-1491911889:65179..66146TCONS_00029168-exon-sc0000727-1491911889:65179..66146Clytia hemisphaericaexon
TCONS_00029168-exon-sc0000727-1510915933:65179..66146TCONS_00029168-exon-sc0000727-1510915933:65179..66146Clytia hemisphaericaexon
TCONS_00029168-exon-sc0000727-1575043694:65179..66146TCONS_00029168-exon-sc0000727-1575043694:65179..66146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000727supercontigsc0000727:65179..66146 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00209	3.33903	1.60835	1.42395	4.72119	3.21186	3.15888	5.52199	1.1835	2.13738	2.38017	2.24817	2.73786	1.83346	2.26207	2.39985	2.51696	1.61706	2.30457	0.921603	2.7365	3.16977	3.20415	5.02878	2.272	4.51965	1.16443	1.28495	1.11591	3.39837
Blast
[Close]
BLAST of TCONS_00029168 vs. Swiss-Prot (Human)
Match: JMJD4 (JmjC domain-containing protein 4 OS=Homo sapiens GN=JMJD4 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 2.839e-73
Identity = 114/248 (45.97%), Postives = 156/248 (62.90%), Query Frame = 2 
Query:  275 YEDFVAQHLKENKPCIFSSNLIADWKCVNSWV-KSDHLNTDFIEKHFGNLTAPVMDCNKQYFSSHEKEDMKVSEFIKYWND-------RDDRLLYLKDWHLQK-LTDERFYDIPTFFTSDWLNEYFDRDGKDDYRFVYIGVKGSWTSFHADVFRSYSWSANICGLKKWIFFPPGEEDKLRDNFGNLPFDVSSLSL--------DEMDITYFVTFQKSGEVIFVPSGWHHQVFNLEDTVSINHNWVNAF 967
            Y DFV   L  N PC+FSS     W     WV  +   + D + + +G++  PV +C  Q ++S+ KE M + ++I YW +            LYLKDWHL +    E  + +P +F+SDWLNE++D    DDYRFVY G  GSW+ FHAD+FRS+SWS N+CG KKW+ FPPG+E+ LRD  GNLP+DV+S +L        +++        Q++GE++FVPSGWHHQV NL+DT+SINHNWVN F
Sbjct:   87 YADFVRGFLLPNLPCVFSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYITYWKEYIQAGYSSPRGCLYLKDWHLCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRFVYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEALRDRHGNLPYDVTSPALCDTHLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGF 334
The following BLAST results are available for this feature:
BLAST of TCONS_00029168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JMJD42.839e-7345.97JmjC domain-containing protein 4 OS=Homo sapiens G... [more]
back to top