TCONS_00029200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029200
Unique NameTCONS_00029200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029200 ID=TCONS_00029200|Name=TCONS_00029200|organism=Clytia hemisphaerica|type=transcript|length=311bp
ATTTCTGATGCAGTGGCTTTCAAAGACTTGTCAAGTGGTactccaaataa
aaatattcttgtGTTGCTGATAACCCCACTTCCTGGTCAACCAAGCCAGA
GTAGAACTGGGACTTTGAGTGTCAATCAAGACAATTATGCTTTCACTGAA
GTAGGAAACTCAATGGACTACTCTAGTGATGATTCTGATTTACCAAATGC
TTTTGGTACTAACCCAAATTTATGTAATAGTTCTACACCTCAAGATCAAT
CTtcttcaaaaagaaagaaatctcCCTTTGTTAACAAGCCaagaaaatct
caaaagaaGGT
Run BLAST on NCBI

protein sequence of TCONS_00029200-protein

>TCONS_00029200-protein ID=TCONS_00029200-protein|Name=TCONS_00029200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
ISDAVAFKDLSSGTPNKNILVLLITPLPGQPSQSRTGTLSVNQDNYAFTE
VGNSMDYSSDDSDLPNAFGTNPNLCNSSTPQDQSSSKRKKSPFVNKPRKS
QKK
Run BLAST on NCBI

transcript from alignment at sc0000728:6779..7089

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029200 ID=TCONS_00029200|Name=TCONS_00029200|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at sc0000728:6779..7089 (Clytia hemisphaerica)
ACCttcttttgagattttcttGGCTTGTTAACAAAGGgagatttctttct
ttttgaagaAGATTGATCTTGAGGTGTAGAACTATTACATAAATTTGGGT
TAGTACCAAAAGCATTTGGTAAATCAGAATCATCACTAGAGTAGTCCATT
GAGTTTCCTACTTCAGTGAAAGCATAATTGTCTTGATTGACACTCAAAGT
CCCAGTTCTACTCTGGCTTGGTTGACCAGGAAGTGGGGTTATCAGCAACa
caagaatatttttatttggagtACCACTTGACAAGTCTTTGAAAGCCACT
GCATCAGAAAT

Coding sequence (CDS) from alignment at sc0000728:6779..7089

>TCONS_00029200 ID=TCONS_00029200|Name=TCONS_00029200|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000728:6779..7089 (Clytia hemisphaerica)
CttcttttgagattttcttGGCTTGTTAACAAAGGgagatttctttcttt
ttgaagaAGATTGATCTTGAGGTGTAGAACTATTACATAAATTTGGGTTA
GTACCAAAAGCATTTGGTAAATCAGAATCATCACTAGAGTAGTCCATTGA
GTTTCCTACTTCAGTGAAAGCATAATTGTCTTGATTGACACTCAAAGTCC
CAGTTCTACTCTGGCTTGGTTGACCAGGAAGTGGGGTTATCAGCAACaca
agaatatttttatttggagtACCACTTGACAAGTCTTTGAAAGCCACTGC
ATCAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016618XLOC_016618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029200-exon-sc0000728-1491911889:6779..7089TCONS_00029200-exon-sc0000728-1491911889:6779..7089Clytia hemisphaericaexon
TCONS_00029200-exon-sc0000728-1510915933:6779..7089TCONS_00029200-exon-sc0000728-1510915933:6779..7089Clytia hemisphaericaexon
TCONS_00029200-exon-sc0000728-1575043694:6779..7089TCONS_00029200-exon-sc0000728-1575043694:6779..7089Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029200-proteinTCONS_00029200-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000728supercontigsc0000728:6779..7089 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.347688	0.33905	0.39367	0	8.43977	4.07564	2.68204	3.76635	0.29299	2.90332	0.704508	0.463116	1.38742	1.20071	0.789714	0.423742	0.522016	1.87267	1.1088	1.54704	1.34466	0.983815	0.797304	0.724865	0	0	2.38374	0.508799	0.771812	1.17953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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