TCONS_00029219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029219
Unique NameTCONS_00029219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029219 ID=TCONS_00029219|Name=TCONS_00029219|organism=Clytia hemisphaerica|type=transcript|length=583bp
GTGGATATCTCAGTGGAATTTCACACAAGTTACCATGGTGATCGGTATAT
GTTCGATGGAAATGGCGGCAAATTAGCACATGCATTTTATCCCAACAAAA
AGCTTGgaaTCTCTGGTGACATTCATCTTGATGATGACGAAATATGGAAA
GTGCCTGGTGGTAAAAATGAACATGTGTCTAGAGCCAAAAGTTTGTTATG
GGTCTTGACGCACGAGATTGGTCATTCACTGGGATTGAAGCATTCAAAGA
ACCGTGCAGCCATTATGCATCCTTGGTATCGAGGAAATAAAGAGGTTGGA
TTACATCATGATGACATCATTGGTGTTCAAAGTCTCTATGGACCACGTAA
CTCTTCAATCATCTTGAAGCGCCCAACCTCCCCACCACCCAGTTGCCCTA
ACAAATTCAAAGCAGTTTTACTTCACAAGGAGACTGGGAATACATACGTC
ATCAATGATGGTCACGTGTACGTGCTCGGGAGACGGTTGGGTATCGATCG
TGGTCCGTTCCCTGTTGGGGAGATCTTCGAAGGAATTTCACACGTGGATT
CTTTGTATTATGATAACAAAGGAAAGATTGTAC
Run BLAST on NCBI

protein sequence of TCONS_00029219-protein

>TCONS_00029219-protein ID=TCONS_00029219-protein|Name=TCONS_00029219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
VDISVEFHTSYHGDRYMFDGNGGKLAHAFYPNKKLGISGDIHLDDDEIWK
VPGGKNEHVSRAKSLLWVLTHEIGHSLGLKHSKNRAAIMHPWYRGNKEVG
LHHDDIIGVQSLYGPRNSSIILKRPTSPPPSCPNKFKAVLLHKETGNTYV
INDGHVYVLGRRLGIDRGPFPVGEIFEGISHVDSLYYDNKGKIV
Run BLAST on NCBI

transcript from alignment at sc0000730:52221..53550+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029219 ID=TCONS_00029219|Name=TCONS_00029219|organism=Clytia hemisphaerica|type=transcript|length=1330bp|location=Sequence derived from alignment at sc0000730:52221..53550+ (Clytia hemisphaerica)
GTGGATATCTCAGTGGAATTTCACACAAGTTACCATGGTGATCGGTATAT
GTTCGATGGAAATGGCGGCAAATTAGCACATGCATTTTATCCCAACAAAA
AGCTTGGTAAGAGCTCGTCTTTAAAGTATTTAAAATCCTTGTTATTGTTG
GgtgaaattttgataatataattttatcCAGTGAGGCTCAGGGGATGTGA
ACAGAAAGCATATCGCTTTCACAGTATGGGctaattatttttcatattca
GCCTCTATTTTTGCTTGTTTACGATTCTAATGTTTTAGAGAAAGTTGCCA
TGGGGATGATGGCGATGTTGCTTAAAATTCAGTTAAATGATTGAAATCAT
GCATTTAGCCTTTGGTGTCGTAACTTtagaaatgtttttattttcaagga
aTCTCTGGTGACATTCATCTTGATGATGACGAAATATGGAAAGTGCCTGG
TGGTAAAAATGAACATGTGTCTAGAGCCAAAAGTTTGTTATGGGTCTTGA
CGCACGAGATTGGTCATTCACTGGGATTGAAGCATTCAAAGAACCGTGCA
GCCATTATGCATCCTTGGTATCGAGGAAATAAAGAGGTTGGATTACATCA
TGATGACATCATTGGTGTTCAAAGTCTCTATGGTGAGTTAACCAAGGGTG
AAAAGTCTTTTGAATATAAACTCAAGCTTGGATTGCTTTTTGAAAGATTC
CTTTTATCAGCTAGTTCCTTGGGTTGATTAGGACGCATTTTTTTCCTCAA
TcctcatttttcaaatatagttTATTCAAACTACACGCTTTTCTATAAAA
ATGGTGCTTTCCGTTTCACCATGGATATTCTTGACTTTTTGGGGAATATA
ATTCTGAAATATTATGTGAGATTTCTTACCATTGCTGGGGATTAGACGTA
CTGATACAATGCTTTAAACGATATTCTTAGACTTAGTTTCCAAATTCAAT
GTTCATcgtattcttagcatattcttaatctTTTGGCCAATTTTATCATG
ACTAAAAGTATAAAAGTatatttttcttaaatattcttataaaaatgtgc
ACTTAGAATAGCACAAATATTTTCTCAATGTTAACAGGACCACGTAACTC
TTCAATCATCTTGAAGCGCCCAACCTCCCCACCACCCAGTTGCCCTAACA
AATTCAAAGCAGTTTTACTTCACAAGGAGACTGGGAATACATACGTCATC
AATGATGGTCACGTGTACGTGCTCGGGAGACGGTTGGGTATCGATCGTGG
TCCGTTCCCTGTTGGGGAGATCTTCGAAGGAATTTCACACGTGGATTCTT
TGTATTATGATAACAAAGGAAAGATTGTAC

Coding sequence (CDS) from alignment at sc0000730:52221..53550+

>TCONS_00029219 ID=TCONS_00029219|Name=TCONS_00029219|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000730:52221..53550+ (Clytia hemisphaerica)
GTGGATATCTCAGTGGAATTTCACACAAGTTACCATGGTGATCGGTATAT
GTTCGATGGAAATGGCGGCAAATTAGCACATGCATTTTATCCCAACAAAA
AGCTTGgaaTCTCTGGTGACATTCATCTTGATGATGACGAAATATGGAAA
GTGCCTGGTGGTAAAAATGAACATGTGTCTAGAGCCAAAAGTTTGTTATG
GGTCTTGACGCACGAGATTGGTCATTCACTGGGATTGAAGCATTCAAAGA
ACCGTGCAGCCATTATGCATCCTTGGTATCGAGGAAATAAAGAGGTTGGA
TTACATCATGATGACATCATTGGTGTTCAAAGTCTCTATGGACCACGTAA
CTCTTCAATCATCTTGAAGCGCCCAACCTCCCCACCACCCAGTTGCCCTA
ACAAATTCAAAGCAGTTTTACTTCACAAGGAGACTGGGAATACATACGTC
ATCAATGATGGTCACGTGTACGTGCTCGGGAGACGGTTGGGTATCGATCG
TGGTCCGTTCCCTGTTGGGGAGATCTTCGAAGGAATTTCACACGTGGATT
CTTTGTATTATGATAACAAAGGAAAGATTGTAGTGGATATCTCAGTGGAA
TTTCACACAAGTTACCATGGTGATCGGTATATGTTCGATGGAAATGGCGG
CAAATTAGCACATGCATTTTATCCCAACAAAAAGCTTGgaaTCTCTGGTG
ACATTCATCTTGATGATGACGAAATATGGAAAGTGCCTGGTGGTAAAAAT
GAACATGTGTCTAGAGCCAAAAGTTTGTTATGGGTCTTGACGCACGAGAT
TGGTCATTCACTGGGATTGAAGCATTCAAAGAACCGTGCAGCCATTATGC
ATCCTTGGTATCGAGGAAATAAAGAGGTTGGATTACATCATGATGACATC
ATTGGTGTTCAAAGTCTCTATGGACCACGTAACTCTTCAATCATCTTGAA
GCGCCCAACCTCCCCACCACCCAGTTGCCCTAACAAATTCAAAGCAGTTT
TACTTCACAAGGAGACTGGGAATACATACGTCATCAATGATGGTCACGTG
TACGTGCTCGGGAGACGGTTGGGTATCGATCGTGGTCCGTTCCCTGTTGG
GGAGATCTTCGAAGGAATTTCACACGTGGATTCTTTGTATTATGATAACA
AAGGAAAGATTGTAGTGGATATCTCAGTGGAATTTCACACAAGTTACCAT
GGTGATCGGTATATGTTCGATGGAAATGGCGGCAAATTAGCACATGCATT
TTATCCCAACAAAAAGCTTGgaaTCTCTGGTGACATTCATCTTGATGATG
ACGAAATATGGAAAGTGCCTGGTGGTAAAAATGAACATGTGTCTAGAGCC
AAAAGTTTGTTATGGGTCTTGACGCACGAGATTGGTCATTCACTGGGATT
GAAGCATTCAAAGAACCGTGCAGCCATTATGCATCCTTGGTATCGAGGAA
ATAAAGAGGTTGGATTACATCATGATGACATCATTGGTGTTCAAAGTCTC
TATGGACCACGTAACTCTTCAATCATCTTGAAGCGCCCAACCTCCCCACC
ACCCAGTTGCCCTAACAAATTCAAAGCAGTTTTACTTCACAAGGAGACTG
GGAATACATACGTCATCAATGATGGTCACGTGTACGTGCTCGGGAGACGG
TTGGGTATCGATCGTGGTCCGTTCCCTGTTGGGGAGATCTTCGAAGGAAT
TTCACACGTGGATTCTTTGTATTATGATAACAAAGGAAAGATTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016635XLOC_016635Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029219-proteinTCONS_00029219-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029219-exon-sc0000730-1491911889:52221..52326TCONS_00029219-exon-sc0000730-1491911889:52221..52326Clytia hemisphaericaexon
TCONS_00029219-exon-sc0000730-1510915933:52221..52326TCONS_00029219-exon-sc0000730-1510915933:52221..52326Clytia hemisphaericaexon
TCONS_00029219-exon-sc0000730-1575043694:52221..52326TCONS_00029219-exon-sc0000730-1575043694:52221..52326Clytia hemisphaericaexon
TCONS_00029219-exon-sc0000730-1491911889:52619..52852TCONS_00029219-exon-sc0000730-1491911889:52619..52852Clytia hemisphaericaexon
TCONS_00029219-exon-sc0000730-1510915933:52619..52852TCONS_00029219-exon-sc0000730-1510915933:52619..52852Clytia hemisphaericaexon
TCONS_00029219-exon-sc0000730-1575043694:52619..52852TCONS_00029219-exon-sc0000730-1575043694:52619..52852Clytia hemisphaericaexon
TCONS_00029219-exon-sc0000730-1491911889:53308..53550TCONS_00029219-exon-sc0000730-1491911889:53308..53550Clytia hemisphaericaexon
TCONS_00029219-exon-sc0000730-1510915933:53308..53550TCONS_00029219-exon-sc0000730-1510915933:53308..53550Clytia hemisphaericaexon
TCONS_00029219-exon-sc0000730-1575043694:53308..53550TCONS_00029219-exon-sc0000730-1575043694:53308..53550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000730supercontigsc0000730:52221..53550 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.277511	0.107406	0.525398	0.255849	0.101088	0.365874	0.685053	0.559559	0.297044	0.961062	0.315882	5.42562	5.63456	0.10773	0.346831	0.498479	0.510925	21.1761	24.0586	0.550298	0.805248	0.21753	0.494416	1.7314	1.18165	1.30072	0.555267	0	0.214543
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021190Pept_M10A
IPR006026Peptidase_Metallo
IPR001818Pept_M10_metallopeptidase
IPR024079MetalloPept_cat_dom
IPR000585Hemopexin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0031012extracellular matrix
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0031012 extracellular matrix
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00029219 vs. Swiss-Prot (Human)
Match: MMP14 (Matrix metalloproteinase-14 OS=Homo sapiens GN=MMP14 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 8.283e-25
Identity = 70/214 (32.71%), Postives = 104/214 (48.60%), Query Frame = 1 
Query:    1 VDISVEFHTSYHGDRYMFDGNGGKLAHAFYPNKKLGISGDIHLDDDEIWKVPGGKNEHVSRAKSLLWVLTHEIGHSLGLKHSKNRAAIMHPWYR--GNKEVGLHHDDIIGVQSLYG------------PRNSSIIL-----KRPTSPPPSCPNKFKAVLLHKETGNTYVINDGHVYVLGRRLGIDRGPFPVGEIFEGI-SHVDSLYYDNKGKIV 582
             DI + F   +HGD   FDG GG LAHA++P   +G  GD H D  E W V   +NE ++    +  V  HE+GH+LGL+HS + +AIM P+Y+    +   L  DD  G+Q LYG            PR +S        K PT  P  C   F  V + +  G  +V  +   + +     +D  P P+G+ + G+ + +++ Y    GK V
Sbjct:  175 ADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIG--GDTHFDSAEPWTV---RNEDLN-GNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGGESGFPTKMPPQPRTTSRPSVPDKPKNPTYGPNICDGNFDTVAMLR--GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYERKDGKFV 380
The following BLAST results are available for this feature:
BLAST of TCONS_00029219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP148.283e-2532.71Matrix metalloproteinase-14 OS=Homo sapiens GN=MMP... [more]
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