TCONS_00029222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029222
Unique NameTCONS_00029222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029222 ID=TCONS_00029222|Name=TCONS_00029222|organism=Clytia hemisphaerica|type=transcript|length=1527bp
ccaatcagatGGGTGGAATTGAGCAGTAAAATTGTTCATGCATGAAAATG
GAACAGAAACGCAGTTCTGTTTGAAAAGTCAagataaacaaacttcaaag
gcAAACAacgaaataacattttttgaaaggACATGAATTTTTAACAATGG
AACGATTGGTAACGGTCAAGGATTGAAAACTTTTAAGTTCAATCCTTCAT
TCGAGTGTATTGTTGACATTTTGCATTCGCTTTAACTTCACGTTGGTTTT
GACTTGGATAATACAAAGGCTATTGACGACTTGGGATttgaatcttttga
aatttggactttttttattGGCTCTTAAAAACTTATAACGAGGAGCATTG
TATCCATGTGCTCACTAACTCAACACATCTCAAGACAAAACCCTACCACA
AAACCCTACCATGTTCAACCACTACCAGAACAACAATGTTTGTGACTTAG
ATTCCATAGCCGTCCATGACATCGAGTTTGATCTTCACCACAATTCAAAC
AATGGACCATATACTCAATTCACTTATGGAGATTATTTACAGGAGTTGCA
GAATCTGGAAGAAGGACGAACACCAATGAAAATCGACCGCCAATCCATTC
CGCGCGACCTCTCTAACCTACATTACGTGCACAATGTGGGTTTACCGATT
GATCAGCAACCACAACAAGCGCCCGCGCGACAACCGACAATCTCGCTTAT
GGTTGATCCTAACACAAACATGCCCGTTCAATTTTCAACTAATCGTGGTG
GTATTCAAGCCCTACCCATCACCTTCATGCCCATCTCACAATCACAGGTT
TTGCAGCAGCACCAGCAAAACCTGTTCCAACAAAGCCGGCAAAACGAGCT
GTCTCAGCAACAAATTCAGCAGACCCAACAACAGACTACGATTTCTCAAC
AGCAGAAATACTCAACGAATCACCATGATAAAACAAAGGAACAAATCgga
caaaatggtcaaaaaatatttccaaaaccCGTTTTCTCGTATTCGTGTTT
AATAGCGATGGCTCTTAGACATAGCGAGCAAGGAAGTCTTCCGGTCAGCG
AAATATACAAATACATGCAATCACGCTTTCCTTACTTCAAGACGGCACCA
GATGGATGGAAGAATTCCGTTCGTCACAACTTATCATTGAACAAAGCGTT
CTGTAAATTAGAGCGTCCGGATGGAACTTCGCAGCGGAAGGGATGTTTGT
GGTCATTGAAGCCGGAAAAGAAGGATCAGCTGCGGAGGGAAATCCGGAAG
TGGAAGAAGAAACATCCGGAAGCCATCAAAGCAAGCATGGCTAACCCTGG
TAAGTTTTATATCAGCCTCGTGTCCTTTATTTTGATAGTGATGACAATCA
ATCTCATGTCTCATAAATAAGAAAAGCTTCAATAAATAACAAATTTACTG
TCTCATAGCTCCGGTGGAATTCCTTATatcatggaggtaataagaaatag
atggagaataaatgacttttatttcattgtacctaatcatcggaagcaaa
cggcTCCTTGGTTGCAATGGGAAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00029222-protein

>TCONS_00029222-protein ID=TCONS_00029222-protein|Name=TCONS_00029222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MFNHYQNNNVCDLDSIAVHDIEFDLHHNSNNGPYTQFTYGDYLQELQNLE
EGRTPMKIDRQSIPRDLSNLHYVHNVGLPIDQQPQQAPARQPTISLMVDP
NTNMPVQFSTNRGGIQALPITFMPISQSQVLQQHQQNLFQQSRQNELSQQ
QIQQTQQQTTISQQQKYSTNHHDKTKEQIGQNGQKIFPKPVFSYSCLIAM
ALRHSEQGSLPVSEIYKYMQSRFPYFKTAPDGWKNSVRHNLSLNKAFCKL
ERPDGTSQRKGCLWSLKPEKKDQLRREIRKWKKKHPEAIKASMANPGKFY
ISLVSFILIVMTINLMSHK
Run BLAST on NCBI

transcript from alignment at sc0000730:72686..77687+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029222 ID=TCONS_00029222|Name=TCONS_00029222|organism=Clytia hemisphaerica|type=transcript|length=5002bp|location=Sequence derived from alignment at sc0000730:72686..77687+ (Clytia hemisphaerica)
ccaatcagatGGGTGGAATTGAGCAGTAAAATTGTTCATGCATGAAAATG
GAACAGAAACGCAGTTCTGTTTGAAAAGTCAagataaacaaacttcaaag
gcAAACAGTTCGTTTATACTTCAACATTGCGcatattttttgcattttct
gcaGCAGAGCTTTCCTAGCATCTATCAAATTTACTGTTtcgttttttcat
aaaatttataaacattttgtttgaattttattaattacggtaataaaatc
aacttcatTAAATTAATATTAAAATGCAGCatgctttcttttcttctttt
tcagacgaaataacattttttgaaaggACATGAATTTTTAACAATGGAAC
GATTGGTAACGGTCAAGGATTGAAAACTTTTAAGTTCAATCCTTCATTCG
AGTGTATTGTTGACATTTTGCATTCGCTTTAACTTCACGTTGGTTTTGAC
TTGGATAATACAAAGGCTATTGACGACTTGGGATttgaatcttttgaaat
ttggactttttttattGGCTCTTAAAAACTTATAACGAGGAGCATTGTAT
CCATGTGCTCACTAACTCAACACATCTCAAGACAAAACCCTACCACAAAA
CCCTACCATGTTCAACCACTACCAGAACAACAATGTTTGTGACTTAGATT
CCATAGCCGTCCATGACATCGAGTTTGATCTTCACCACAATTCAAACAAT
GGACCATATACTCAATTCACTTATGGAGATTATTTACAGGAGTTGCAGAA
TCTGGAAGAAGGTTTGACTTTTTACATTTCCTCTTTGTATAAGTCTTGTG
TTGAATCAAATAAGCGGACGTTTTCTATTACAACCCTGTCTCGTAGCTcc
ggtgaaattttttttattatacccctgtctcatagcTCCGGTGGATTTCT
TTCTATTATACACCCCTGTTTTACAGTCTTGATGGAATCCCCCCTGTCTC
GTGgtaaatttctattgaaatccccaTGGGGGCTAGAATGCCTATTGTTC
CAAgttcagaaaattcagtggggatggttttggagtgtaatttcttcctt
tgaattTAGTACGAggatgaaatgaaagtcaatttcACACTGGGACTCTT
ATAGCATATCTTTTTCTCATCGGgcacaaaattttgacccaaTTTTCGAC
TAAAGTCCTTTTCGTGAAGTTGGAGGCACGAGCTCTGTCTTTTTACTAGC
ACCTAACGTTTAGACGTTGTAAACATTTGAGAAACGTGGAAATAACGTTG
TGAGCTAGCTGAAAGGGTTAAGTTCTGATTTGCTAGGATCTCAGAAGACA
AATGTATTTAAATAGAATCTTTTAAATGTCCATCAttttcagattaaaaa
aatGAGACACAGATGTTAAAAATCAGCTGTTTTGTGGATAACATTTAGAT
TTCATTCAAATcatcattatttttcaatagGACGAACACCAATGAAAATC
GACCGCCAATCCATTCCGCGCGACCTCTCTAACCTACATTACGTGCACAA
TGTGGGTTTACCGATTGATCAGCAACCACAACAAGCGCCCGCGCGACAAC
CGACAATCTCGCTTATGGTTGATCCTAACACAAACATGCCCGTTCAATTT
TCAACTAATCGTGGTGGTATTCAAGCCCTACCCATCACCTTCATGCCCAT
CTCACAATCACAGGTTTTGCAGCAGCACCAGCAAAACCTGTTCCAACAAA
GCCGGCAAAACGAGCTGTCTCAGCAACAAATTCAGCAGACCCAACAACAG
ACTACGATTTCTCAACAGCAGAAATACTCAACGAATCACCATGATAAAAC
AAAGGAACAAATCggacaaaatggtcaaaaaatatttccaaaaccCGTTT
TCTCGTATTCGTGTTTAATAGCGATGGCTCTTAGACATAGCGAGCAAGGA
AGTCTTCCGGTCAGCGAAATATACAAATACATGCAGTAAGTTTCTTATAT
AATCTCGCTCGTATCGTAAGAAGATTCGATGAAAGAGTCTGCTTTGTATT
CATTGAGTTGGTTTGAACACACTCATAGAAAGTTGTCTCCTTTTCTTGCT
CCACACCATAAGGTAAAATAACCTCGAAACAACTATTTTTACTTATGTTT
AACTCTCTTTTTCACCCTTGCATCCTTGGTCTTATaagttcaattcaatt
caattcaaaacatatatttacccgAAGGAAGGGACACCAAGTTTAGAAAC
CTTATAAAATTACAAATGGTGCAACCTAAAGTGTCAGGAATACTGAGCCT
GTGAACATCATAGGGTCGGGACGGACACGTTTAAGAATTTAACGGgatta
aaatgttttcaaaggTACCATTTCTTATGTAGGtagaaaatccgtcaaaa
acaatactttcaaaatttttgaatgaatttgCAAGAATAATACCATAAAG
GTGTattattcgaaaatattttctattacAATGAATAGAATGAATGTGAA
CAGGTGCTTCAtgttcagttgatgacgtcatcaattggaCCGTTACATAT
CAtatgatgaaaatatttttgtcgtTCTATTGATTTATTATTGATGGCAA
TAACAAGTGAAATTCGGacagtattttttgtttttcacatAACGGTGTTG
TATGGCCGAGCGTTGTAATAGTGGAATtcagaacatttttgaaaaaaaaa
tcaaacaaaagttaaaaaaaaaatagaaagaaaataatcaaaaataaaat
aaaaataaaataaatcaaaaataaaaaaacaatgaaaaaattttggaata
aaaataaatgtatgAATACGAAAAGTTCTAAAGTGCTGATTAGGATTAGA
CATATATGCCGTAGCTTTTTGTGGGAATGAGAAAATACCTGCGAAATAGA
TTCAATTAAAACAATTACAGTCTATTCTCTTTGGTAGAATCTATTAAGAA
AAGACAGGagatgtcaaaatttgaatccACATTTCAAGGAATGCAGTAAA
ATCTTGGCTACCATCCAtctgaaattttcttttgtctttgaACAAAACTT
GTAAACGCCAAGGTACTCGAATCCCTCGAACTAACTTCTGTCTTTTTCGa
ataaagaaacaaaacaagTGCATATATTTTGATGCATTGACAATACCAAA
TTCTTATATATtattaacacccctgtctcatttaaCCTTTTCTTCTCAGA
AAGGAAAGCACTTGCAATTCATCAAAGCTTTTAAACTATATATACCTACA
TAAAACATTTATCTAAAAAACCTATCAGATAAGTATTTTCAATATATTAC
CTTTTCCAGACTTTCGAGACGCAGAGTGGAGGCCCCTATTTAACCAATTT
TTCAtttggaggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNACGCCAAGGTACTCGAATCCCTCGAACT
AACTTCTGTCTTTTTCGaataaagaaacaaaacaagTGCACATATTTTGA
TGCATTGACAATACCAAATTCTTATATATtattaacacccctgtctcatt
taaCCTTTTCTTCACAGAAAGGAAAGCACTTGCAATTCATCAAAGCTTTT
AAACTATATATACCTACATAAAACATTTATCTAAAAAACCTATCAGATAG
GTATTTTCAATATATTACCTTTTCCAGACTTTCGAGACGCAGAGTGGAGG
CCCCTATTTAACCAATTTTTCAtttggaggggggggggtcgttACCCATC
AGCTCTTACTATGGAAAACATAGAATAAATCACTTAAAAGAACTCATCAC
ATCaatctgttttttattttttttgcaatgtgAGACAAGCATTAACtgtt
ttttcaccttttaaaTCGGAGCAAGTTTGCTTTGTGGTGGTGGAAATATT
GCGAAGTATAGCCTAAAGAGCAATAGAAACCATGATGGCCCCGAGGTTGG
ATTATCTTTATGtcttttctttctctttcaGATCACGCTTTCCTTACTTC
AAGACGGCACCAGATGGATGGAAGGTATGAAAAAAGGCTATCATACATTC
TCTCCCCTTTTCTCACAACCCCATAGCGAGCAGGGATAAAAATCTTTATA
GAATTTCCAATGGGGGTAgagattctaaaaaaaacaatgaagaaGTTTTA
TTACGTGTTATTCCTATCctaacaaaatctttttttttgtctcTGTGTCT
TATgtctcgatgtagaaattttcctcTGGCATGGTAAGGCCATAATATTC
GGGAAAAATCTGGAAAGTTTGGATTTTATAACGAAATTACATAATGAAAG
ATCTCCTGTCCTGAGATCTGGGATCCAAATAAAAGTCATTTGAGGAAGGA
CACTATTTGTGcagcctacaaactttacaattcTAAAGCAGAGTGCTTAC
AAaatattatttcattttacCACATTCCCACCAATAGAATTCCGTTCGTC
ACAACTTATCATTGAACAAAGCGTTCTGTAAATTAGAGCGTCCGGATGGA
ACTTCGCAGCGGAAGGGATGTTTGTGGTCATTGAAGCCGGAAAAGAAGGA
TCAGCTGCGGAGGGAAATCCGGAAGTGGAAGAAGAAACATCCGGAAGCCA
TCAAAGCAAGCATGGCTAACCCTGGTAAGTTTTATATCAGCCTCGTGTCC
TTTATTTTGATAGTGATGACAATCAATCTCATGTCTCATAAATAAGAAAA
GCTTCAATAAATAACAAATTTACTGTCTCATAGCTCCGGTGGAATTCCTT
ATatcatggaggtaataagaaatagatggagaataaatgacttttatttc
attgtacctaatcatcggaagcaaacggcTCCTTGGTTGCAATGGGAAAA
AG

Coding sequence (CDS) from alignment at sc0000730:72686..77687+

>TCONS_00029222 ID=TCONS_00029222|Name=TCONS_00029222|organism=Clytia hemisphaerica|type=CDS|length=3840bp|location=Sequence derived from alignment at sc0000730:72686..77687+ (Clytia hemisphaerica)
ATGTTCAACCACTACCAGAACAACAATGTTTGTGACTTAGATTCCATAGC
CGTCCATGACATCGAGTTTGATCTTCACCACAATTCAAACAATGGACCAT
ATACTCAATTCACTTATGGAGATTATTTACAGGAGTTGCAGAATCTGGAA
GAAGGACGAACACCAATGAAAATCGACCGCCAATCCATTCCGCGCGACCT
CTCTAACCTACATTACGTGCACAATGTGGGTTTACCGATTGATCAGCAAC
CACAACAAGCGCCCGCGCGACAACCGACAATCTCGCTTATGGTTGATCCT
AACACAAACATGCCCGTTCAATTTTCAACTAATCGTGGTGGTATTCAAGC
CCTACCCATCACCTTCATGCCCATCTCACAATCACAGGTTTTGCAGCAGC
ACCAGCAAAACCTGTTCCAACAAAGCCGGCAAAACGAGCTGTCTCAGCAA
CAAATTCAGCAGACCCAACAACAGACTACGATTTCTCAACAGCAGAAATA
CTCAACGAATCACCATGATAAAACAAAGGAACAAATCggacaaaatggtc
aaaaaatatttccaaaaccCGTTTTCTCGTATTCGTGTTTAATAGCGATG
GCTCTTAGACATAGCGAGCAAGGAAGTCTTCCGGTCAGCGAAATATACAA
ATACATGCAATCACGCTTTCCTTACTTCAAGACGGCACCAGATGGATGGA
AGAATTCCGTTCGTCACAACTTATCATTGAACAAAGCGTTCTGTAAATTA
GAGCGTCCGGATGGAACTTCGCAGCGGAAGGGATGTTTGTGGTCATTGAA
GCCGGAAAAGAAGGATCAGCTGCGGAGGGAAATCCGGAAGTGGAAGAAGA
AACATCCGGAAGCCATCAAAGCAAGCATGGCTAACCCTGGTAAGTTTTAT
ATCAGCCTCGTGTCCTTTATTTTGATAGTGATGACAATCAATCTCATGTC
TCATAAATAAATGTTCAACCACTACCAGAACAACAATGTTTGTGACTTAG
ATTCCATAGCCGTCCATGACATCGAGTTTGATCTTCACCACAATTCAAAC
AATGGACCATATACTCAATTCACTTATGGAGATTATTTACAGGAGTTGCA
GAATCTGGAAGAAGGACGAACACCAATGAAAATCGACCGCCAATCCATTC
CGCGCGACCTCTCTAACCTACATTACGTGCACAATGTGGGTTTACCGATT
GATCAGCAACCACAACAAGCGCCCGCGCGACAACCGACAATCTCGCTTAT
GGTTGATCCTAACACAAACATGCCCGTTCAATTTTCAACTAATCGTGGTG
GTATTCAAGCCCTACCCATCACCTTCATGCCCATCTCACAATCACAGGTT
TTGCAGCAGCACCAGCAAAACCTGTTCCAACAAAGCCGGCAAAACGAGCT
GTCTCAGCAACAAATTCAGCAGACCCAACAACAGACTACGATTTCTCAAC
AGCAGAAATACTCAACGAATCACCATGATAAAACAAAGGAACAAATCgga
caaaatggtcaaaaaatatttccaaaaccCGTTTTCTCGTATTCGTGTTT
AATAGCGATGGCTCTTAGACATAGCGAGCAAGGAAGTCTTCCGGTCAGCG
AAATATACAAATACATGCAATCACGCTTTCCTTACTTCAAGACGGCACCA
GATGGATGGAAGAATTCCGTTCGTCACAACTTATCATTGAACAAAGCGTT
CTGTAAATTAGAGCGTCCGGATGGAACTTCGCAGCGGAAGGGATGTTTGT
GGTCATTGAAGCCGGAAAAGAAGGATCAGCTGCGGAGGGAAATCCGGAAG
TGGAAGAAGAAACATCCGGAAGCCATCAAAGCAAGCATGGCTAACCCTGG
TAAGTTTTATATCAGCCTCGTGTCCTTTATTTTGATAGTGATGACAATCA
ATCTCATGTCTCATAAATAAATGTTCAACCACTACCAGAACAACAATGTT
TGTGACTTAGATTCCATAGCCGTCCATGACATCGAGTTTGATCTTCACCA
CAATTCAAACAATGGACCATATACTCAATTCACTTATGGAGATTATTTAC
AGGAGTTGCAGAATCTGGAAGAAGGACGAACACCAATGAAAATCGACCGC
CAATCCATTCCGCGCGACCTCTCTAACCTACATTACGTGCACAATGTGGG
TTTACCGATTGATCAGCAACCACAACAAGCGCCCGCGCGACAACCGACAA
TCTCGCTTATGGTTGATCCTAACACAAACATGCCCGTTCAATTTTCAACT
AATCGTGGTGGTATTCAAGCCCTACCCATCACCTTCATGCCCATCTCACA
ATCACAGGTTTTGCAGCAGCACCAGCAAAACCTGTTCCAACAAAGCCGGC
AAAACGAGCTGTCTCAGCAACAAATTCAGCAGACCCAACAACAGACTACG
ATTTCTCAACAGCAGAAATACTCAACGAATCACCATGATAAAACAAAGGA
ACAAATCggacaaaatggtcaaaaaatatttccaaaaccCGTTTTCTCGT
ATTCGTGTTTAATAGCGATGGCTCTTAGACATAGCGAGCAAGGAAGTCTT
CCGGTCAGCGAAATATACAAATACATGCAATCACGCTTTCCTTACTTCAA
GACGGCACCAGATGGATGGAAGAATTCCGTTCGTCACAACTTATCATTGA
ACAAAGCGTTCTGTAAATTAGAGCGTCCGGATGGAACTTCGCAGCGGAAG
GGATGTTTGTGGTCATTGAAGCCGGAAAAGAAGGATCAGCTGCGGAGGGA
AATCCGGAAGTGGAAGAAGAAACATCCGGAAGCCATCAAAGCAAGCATGG
CTAACCCTGGTAAGTTTTATATCAGCCTCGTGTCCTTTATTTTGATAGTG
ATGACAATCAATCTCATGTCTCATAAATAAATGTTCAACCACTACCAGAA
CAACAATGTTTGTGACTTAGATTCCATAGCCGTCCATGACATCGAGTTTG
ATCTTCACCACAATTCAAACAATGGACCATATACTCAATTCACTTATGGA
GATTATTTACAGGAGTTGCAGAATCTGGAAGAAGGACGAACACCAATGAA
AATCGACCGCCAATCCATTCCGCGCGACCTCTCTAACCTACATTACGTGC
ACAATGTGGGTTTACCGATTGATCAGCAACCACAACAAGCGCCCGCGCGA
CAACCGACAATCTCGCTTATGGTTGATCCTAACACAAACATGCCCGTTCA
ATTTTCAACTAATCGTGGTGGTATTCAAGCCCTACCCATCACCTTCATGC
CCATCTCACAATCACAGGTTTTGCAGCAGCACCAGCAAAACCTGTTCCAA
CAAAGCCGGCAAAACGAGCTGTCTCAGCAACAAATTCAGCAGACCCAACA
ACAGACTACGATTTCTCAACAGCAGAAATACTCAACGAATCACCATGATA
AAACAAAGGAACAAATCggacaaaatggtcaaaaaatatttccaaaaccC
GTTTTCTCGTATTCGTGTTTAATAGCGATGGCTCTTAGACATAGCGAGCA
AGGAAGTCTTCCGGTCAGCGAAATATACAAATACATGCAATCACGCTTTC
CTTACTTCAAGACGGCACCAGATGGATGGAAGAATTCCGTTCGTCACAAC
TTATCATTGAACAAAGCGTTCTGTAAATTAGAGCGTCCGGATGGAACTTC
GCAGCGGAAGGGATGTTTGTGGTCATTGAAGCCGGAAAAGAAGGATCAGC
TGCGGAGGGAAATCCGGAAGTGGAAGAAGAAACATCCGGAAGCCATCAAA
GCAAGCATGGCTAACCCTGGTAAGTTTTATATCAGCCTCGTGTCCTTTAT
TTTGATAGTGATGACAATCAATCTCATGTCTCATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016638XLOC_016638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029222-exon-sc0000730-1491911889:72686..72792TCONS_00029222-exon-sc0000730-1491911889:72686..72792Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1510915933:72686..72792TCONS_00029222-exon-sc0000730-1510915933:72686..72792Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1575043694:72686..72792TCONS_00029222-exon-sc0000730-1575043694:72686..72792Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1491911889:72990..73446TCONS_00029222-exon-sc0000730-1491911889:72990..73446Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1510915933:72990..73446TCONS_00029222-exon-sc0000730-1510915933:72990..73446Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1575043694:72990..73446TCONS_00029222-exon-sc0000730-1575043694:72990..73446Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1491911889:74116..74620TCONS_00029222-exon-sc0000730-1491911889:74116..74620Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1510915933:74116..74620TCONS_00029222-exon-sc0000730-1510915933:74116..74620Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1575043694:74116..74620TCONS_00029222-exon-sc0000730-1575043694:74116..74620Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1491911889:76817..76859TCONS_00029222-exon-sc0000730-1491911889:76817..76859Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1510915933:76817..76859TCONS_00029222-exon-sc0000730-1510915933:76817..76859Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1575043694:76817..76859TCONS_00029222-exon-sc0000730-1575043694:76817..76859Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1491911889:77273..77687TCONS_00029222-exon-sc0000730-1491911889:77273..77687Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1510915933:77273..77687TCONS_00029222-exon-sc0000730-1510915933:77273..77687Clytia hemisphaericaexon
TCONS_00029222-exon-sc0000730-1575043694:77273..77687TCONS_00029222-exon-sc0000730-1575043694:77273..77687Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029222-proteinTCONS_00029222-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000730supercontigsc0000730:72686..77687 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.215343	0.263127	0.396867	0.449569	0	0	25.6439	29.5153	7.25861	7.75471	5.78154	5.119	24.8092	21.1945	12.4113	34.9876	18.0854	18.2263	1.44141	1.94628	10.999	11.5012	5.80234	8.16528	13.8722	19.9638	2.87896	0.835178	0.149384	0.243517
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00029222 vs. Swiss-Prot (Human)
Match: FOXN1 (Forkhead box protein N1 OS=Homo sapiens GN=FOXN1 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.134e-43
Identity = 73/113 (64.60%), Postives = 91/113 (80.53%), Query Frame = 3 
Query:  960 QKIFPKPVFSYSCLIAMALRHSEQGSLPVSEIYKYMQSRFPYFKTAPDGWKNSVRHNLSLNKAFCKLERPDGTSQRKGCLWSLKPEKKDQLRREIRKWKKKHPEAIKASMANP 1298
            Q +FPKP++SYS LI MAL++S+ GSLPVSEIY +M   FPYFKTAPDGWKNSVRHNLSLNK F K+E   G+S RKGCLW+L P K D+++ E++KWK+K P A++ SMA P
Sbjct:  266 QPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAKIDKMQEELQKWKRKDPIAVRKSMAKP 378
The following BLAST results are available for this feature:
BLAST of TCONS_00029222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXN15.134e-4364.60Forkhead box protein N1 OS=Homo sapiens GN=FOXN1 P... [more]
back to top