TCONS_00029233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029233
Unique NameTCONS_00029233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029233 ID=TCONS_00029233|Name=TCONS_00029233|organism=Clytia hemisphaerica|type=transcript|length=380bp
GGGAATTCAAACAAAAcggttttattttatttttgtattagatttatttt
taatCTAGACTTAAATTATTACTGATATATTCAAAATTATTAACTTTCAT
CAAATACAATATTTCAAATCATTGCTGGCAGTTGCTTTCTGTGTAATATT
TGCCAATTTTTTGCCACCAATATTTCAATGGTATCATAGTCATTCAACTT
TGTTCTTCGTTTTCAGATTCATCTTCACCTAAGCAGTCTCAAACAACGAG
AACCATAATGACGACGATTTTGAACACACCATAGATGAGAACCATGGGTA
CACAAAGAGTTCCAATCAACTCGAAGTAATTCAACATTCCCCAATGATAA
CAAGGTCCttcctttttgatttcttttcta
Run BLAST on NCBI

transcript from alignment at sc0000730:44495..44874

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029233 ID=TCONS_00029233|Name=TCONS_00029233|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0000730:44495..44874 (Clytia hemisphaerica)
tagaaaagaaatcaaaaaggaaGGACCTTGTTATCATTGGGGAATGTTGA
ATTACTTCGAGTTGATTGGAACTCTTTGTGTACCCATGGTTCTCATCTAT
GGTGTGTTCAAAATCGTCGTCATTATGGTTCTCGTTGTTTGAGACTGCTT
AGGTGAAGATGAATCTGAAAACGAAGAACAAAGTTGAATGACTATGATAC
CATTGAAATATTGGTGGCAAAAAATTGGCAAATATTACACAGAAAGCAAC
TGCCAGCAATGATTTGAAATATTGTATTTGATGAAAGTTAATAATTTTGA
ATATATCAGTAATAATTTAAGTCTAGattaaaaataaatctaatacaaaa
ataaaataaaaccgTTTTGTTTGAATTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016645XLOC_016645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029233-exon-sc0000730-1491911889:44495..44874TCONS_00029233-exon-sc0000730-1491911889:44495..44874Clytia hemisphaericaexon
TCONS_00029233-exon-sc0000730-1510915933:44495..44874TCONS_00029233-exon-sc0000730-1510915933:44495..44874Clytia hemisphaericaexon
TCONS_00029233-exon-sc0000730-1575043694:44495..44874TCONS_00029233-exon-sc0000730-1575043694:44495..44874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000730supercontigsc0000730:44495..44874 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	2.27283	1.51591	1.89177	0.690877	6.34723	5.58858	2.23838	2.40213	1.71323	1.43674	9.48354	10.3854	4.8143	7.04474	2.14095	5.40677	0	0	0.284486	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top