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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029362 ID=TCONS_00029362|Name=TCONS_00029362|organism=Clytia hemisphaerica|type=transcript|length=1675bpRun BLAST on NCBI protein sequence of TCONS_00029362-protein >TCONS_00029362-protein ID=TCONS_00029362-protein|Name=TCONS_00029362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp MSNSSTNDAGSSKLPEADDKEDGISNDVTNQDGGASGGAGAITEESARDRRun BLAST on NCBI transcript from alignment at sc0000744:81631..98912- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029362 ID=TCONS_00029362|Name=TCONS_00029362|organism=Clytia hemisphaerica|type=transcript|length=17282bp|location=Sequence derived from alignment at sc0000744:81631..98912- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000744:81631..98912- >TCONS_00029362 ID=TCONS_00029362|Name=TCONS_00029362|organism=Clytia hemisphaerica|type=CDS|length=14859bp|location=Sequence derived from alignment at sc0000744:81631..98912- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00029362 vs. Swiss-Prot (Human)
Match: SIR2 (NAD-dependent protein deacetylase sirtuin-2 OS=Homo sapiens GN=SIRT2 PE=1 SV=2) HSP 1 Score: 361.688 bits (927), Expect = 2.440e-119 Identity = 189/349 (54.15%), Postives = 240/349 (68.77%), Query Frame = 3
Query: 87 SSKLPEADDKEDGISNDVTNQDGGASGGAGAITEESARDRLFEYFKTLGISTNQTEEKHEKVISSLTIEGIAEHIRELRCKNIIVMTGAGISTSAGIPDFRSPGTGLYSKLEKYNLPYPQAIFELDYFKENPDPFFLLAKELYPGNFQPTPSHRFIKLLHENGLLLRNYTQNIDGLEVVAGVPQDKIVAAHGTFMTSHCI--GCEKEYSESWMREKIFASELPICESCGGTVKPDIVFFGENLPLRFFTCMGQDFRKADLLIVMGTSLTVQPFASLINRVGDHVPRLLINKEKCXXX--------XXXXXXXXXXPNSYRDVALLGDCDEGCSKLSELLGWKDDLERLM 1103
+ K+ EA D + ++ +GGA+GG + ++ + L T + E+++ LT+EG+A +++ RC+ +I + GAGISTSAGIPDFRSP TGLY LEKY+LPYP+AIFE+ YFK++P+PFF LAKELYPG F+PT H F++LL + GLLLR YTQNID LE +AG+ Q+ +V AHGTF TSHC+ C EY SWM+EKIF+ P CE C VKPDIVFFGE+LP RFF+CM DF K DLL+VMGTSL VQPFASLI++ PRLLINKEK GQS GG DFD +YRDVA LG+CD+GC L+ELLGWK +LE L+
Sbjct: 14 AGKVQEAQDSD-------SDSEGGAAGGEADM----------DFLRNLFSQTLSLGSQKERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWKKELEDLV 345 The following BLAST results are available for this feature:
BLAST of TCONS_00029362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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