TCONS_00029536 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00029536
Unique Name	TCONS_00029536
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1887

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000753:35762..43033-

transcript sequence

>TCONS_00029536 ID=TCONS_00029536|Name=TCONS_00029536|organism=Clytia hemisphaerica|type=transcript|length=1887bp
CGAAGAAGTGTTTTTAAGCTTGCAGTGTGTCATAAcataaaaattgcatt
tctgtGCTTATTTGACGATCAGAGGGAATTGTTTAGCGCTGTTTACAACA
AATAAAATCTTTGACGGACAATGCATGGCCTCACCACTTCTCTTTGGGAG
GTCATCTCCTGGAAATCAAAATCTCAATATGACACAGCTGGCGATCAATA
CACTCGTATCTTCATGCCAAAACTGTTCATCATTTCGTCTCTTATAATGG
CTTTCAGCTACTTCAATGATAAACTAAACTGCATGGTTTCATCAAGGCTC
AATGGATTGAAGGAGTTTGTTCAAGAGACCTGTTGGATTCAAGGATTTTA
CATTTACCATGAAATGCACACAAAATTGAACGAGTCTTCGTATTACGGAA
TTCCTGAATATACAGGTTATAATGGAATTACAAAAGACGGTCAATTATGC
TCAACTATCAACCGTGCAGGAGGAGTCCATACCAAATGTGCACCAATGAC
TAAAAGatatTTCTTACATTATCAATGGGTGCCTTTTTACGTGGTTAGTT
TGGCTATCCTATACTACGTTCCATATCTAATCTTCAAGTCGGTCAACTCA
GATCTCATCTCACTGGTGGATACAGTGGAAACCGGCAATCTACGAGATGT
GGATAAGATTGCCAACAACTACTTTAACTATCGCATCAATTCTAAAGTCA
AGATGAAGATCATTGTTTGGGTAAACCTTATGATTAAGGTTATTTTCATT
GTCGTTAACATCTCTGGCTTCTTATTGACCGATTACACAATGGATGGACG
ATTTATCGATTATGGTCTTAACTGGATCAGTTGGAATGATGTGCCCAACC
ATATTGCTCATGACATTGTGAAAAGAGGAACACCAAAACCTGGCGATCAT
TTCTTGCCATCTGTCGGAATGTGTGATATCCACGAAGCGCTGAATGACAA
ACGTGGTATTTACATCGATAAacacAAAGTGATCTGTGAAATCAGCCAAA
ACATTCGATACCAATacaattttatcattctatGGTTCTTCTTTGCTTCT
GGTTTGGTCATCTCATCATTTGGTCTTctccattcaattttcaaacttct
cAAATCAATGTTTTGGGTTTACTCACCAAAGTTGTTCGACCATGAAACAT
CACTATCTAATCGCGTTCATTCTCAACTCACACTCAGAGAGATGGAATAT
CTTGATAAGATTCGTCAGATGGATATGACAATGTACGGCGAGATTCTCCG
GGAATTGACAAGATATAAACCAAGTATTGGCTCTATTAAGAAGTTTGCAC
CTCAAACTACATCTGAGATGATTACATTGCTACCATCAGCACCAAAAGAA
ATACAAAATCATTGGGATAGACTTGTTTGATTCCAATCTTCGTTCGGTCT
TGAATGGAATCTTTGACTATTTGGTGAATAGAGTAGGATACAGAACGGCT
ACACTAAGCTTACACTAAACATCAAAGAAATGCCCTTTAATTAATGTTAC
AAAACATCTATCTAGTGTTAGATAGAGGTTGAAACATCAGCCGAACAAGT
CAGTAGTCAAAACACATCCAGTCCACAACACTTCATCGAAATGGCAAGAA
CTGCCATCACGAGAATTAGTTCTCCAAAAGGAAGGTGTTGTTGTTCCGAA
ACAGGAAAGAAAAATGGAATTAGGAGGCGGTACCTGGTGTATTTCCTAAC
TATCTGTTGAATGTTATTTATTTATCTTTTATCCATGAGCATTTCCGGAG
TTCACAATACCTACCGTCATTTCTCTAATTTATCGCGTCCTCTAATTCAT
ACGGATCAAAttggtttgaaaaatttggACCAATATTTTTCCTCTAATTA
TTAGTTCTGGACCTTTTTTACCTATTTCTGATTTTCC

Run BLAST on NCBI

transcript from alignment at sc0000753:35762..43033-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00029536 ID=TCONS_00029536|Name=TCONS_00029536|organism=Clytia hemisphaerica|type=transcript|length=7272bp|location=Sequence derived from alignment at sc0000753:35762..43033- (Clytia hemisphaerica)
CGAAGAAGTGTTTTTAAGCTTGCAGTGTGTCATAACATAAAAATTGCATT
TCTGTGCTTATTTGACGATCAGAGGGAATTGTTTAGCGCTGTTTACAACA
AATAAAATCTTTGACGGTAAGTTTTGTTAGATTTTTAAATGAAATAAAAT
CTAGCGCTTATTTTTAAGCTAAATTTAAACGACTTAGTCTTGATATAGCA
ATATTTTGACGAATCTCAACAGGGTAGGAGTTTTTGATGGGTATTGTAAA
AGATTTACGACTTGATATCACTAAAGAAAAGATTATCCATGATGGTGTAA
GGCGTGTAAAAAATAATGATTTTTTCCTTTTGAATTTATATCAGATGAGA
TGGAGTTTTTATAAGATGTTTTAATAATTGGTCATTTGAAGTAATGAAAA
TGACGTGTTCATTCTTTAGAAAAAAGTAACAAAATTGTTTTATTACTGGT
TGACGACCAACCAAATCAAATAAAAGCTTGTAAAAGCATCATATCGTCCC
ATTTATATAGATGATGCTATTGTCCGTTATAGGGGTAGTAAAAGGCGGGA
AAATACACGCGCATACCTTATCGGCCAAAACTTAATCAGCCTTAATTTTA
GTCGGCCTTTGCCAGTTTTGCCATTTTTAAATTTTTAGTCGGCCCAAATT
TTAGTCGGCCCAAATTTTTAGTCGGCCCTAATTTTAGTCACCAAGCCAAA
ATTTAGTCACTTAGGGCCGATTAAGTTTTGGCCAATAAGGTAGCTCAACA
GGCGTAATTGTGGTATGTGAAAAAGAAAAATCGACGGTAGAGTTTTTATT
ACCGAAGCATAGTCTAAGAACGTCAAACTCTACCGACTGTAAACTCTTTT
CGGCAAAAATAACCACTTGTTTGCAAACTAATTTCCTTCGGCTTTTGGCT
TAATTCTTGGATAGTGATTTTTCTTAGACGATAGCATAATCTAGGAATTG
TCTCTGTATGTTGAGACTATTAATTACACGGTCAGTGAAGGGTACAATAC
GGAATATATTGGTTCAAAAAAGAAACCCGTATTGGACGAGGCTTGTCGAG
TATATTATTTCGTACTAACTCTTCGTAGAACTTTAGTTTTATCATAATAC
GATGGGATTCTAGCGAAATCAAAAAGTTTGTCCAAAATTAAAACAATAAG
ACCTCGACGTAGGTCCAATGGACACTAAAAAAGTCTTTACTGAATTTAAA
ATGAGGGATTAAATGCCTGGCCATCAAGAATAGTTTTGTCAGTGACACAA
GGGTGTGTAGGATGGCGTGAGAGTATATAAACTGCGAAATCTTCATTGAA
AAGAAAAAAAATGTTTAGTTATCTTGATTTTTTAATTTGATTAACTTTTA
ATAAACCAAAAGCATTCTTTAGAGGGAAACTTGGTACTTTTACACCAAGG
CTCTAATTAGCAGATCAAAGAAAATGCAAACGAAAATCTTTAATAATTCA
TGCATTTTGTTTTTTGAGATAAATATCCTAATTGGTAAACTAAATTAGTA
CTGTACCTTTATTGGCCTTATAACAACAAAAACTATCGTATAAACGTAAT
TTAGGATAACTTAAAATTCCAAAAAATAGCATAGCTAATACTGATAGGTT
GATAGAATTTGCTACTTGCCTCTTATTTTTGGGTACCAAATCTCAGTAAT
CTTTTATGTGGACATCAATAGTCGCTTGCATCAATACAACATCAATTCAT
TTTGGCACTTATTGCAAAGCCTTAAATCGACTTCCTTCTCCTGTCTTTGT
CTTGTACAAAGACAGGAGAAGGAACTCCAGCTCGGACAAAACTTAAAGAC
ATTTTTCAATTCATATCCATAATATCTCACAACGTTTAAAGAACGTTCTG
GGCCAGCTTCAGGTATACTCTGCTTAAAAATCCACCTTTCCTTATTGTGT
TTTTATGACATTTCATTTTCACTTTTAGGACAATGCATGGCCTCACCACT
TCTCTTTGGGAGGTCATCTCCTGGAAATCAAAATCTCAATATGACACAGC
TGGCGATCAATACACTCGTATCTTCATGCCAAAACTGTTCATCATTTCGT
CTCTTATAATGGCTTTCAGCTACTTCAATGATAAACTAAACTGCATGGTT
TCATCAAGGCTCAATGGATTGAAGGAGTTTGTTCAAGAGACCTGTTGGAT
TCAAGGATTTTACATTTACCATGAAATGCACACAAAATTGAACGAGTCTT
CGTATTACGGAATTCCTGAATATACAGGTTATAATGGAATTACAAAAGAC
GGTAAGGAACGACAAATACACTTTAGTGTTCACAGGTTCTAAAGAGCATT
TGAAATTTCTTCCAGAAAACCCCCCTCCCCTTTAGAATAAAGTCACTCGT
TGAGAAAAAAAACCATCTTCTCGGTAACCAAAGATTATATTTGTAATTTG
AGCTAAGATATGATAGATATTAACATTTGTAATAATGGTAGATGCTCTAA
GTAAATCCATTCACACATAAATATTACGTTTAAGGCACTGAAAAGGCTAG
AGAGAAATCATCAGCCTCTCAATCAAGAAAAAGTAAGAAAAATGCGTCAC
ATTTAGGATGACCTTTCTTTGTTTTTAAGCGACATATTTTTGAAATCTCC
TATGGATTTACTTTCAATCTGTCGTTTGTGTGAAAGCGAAGTGGGTCAAC
AAGTAGCCAGTGCCTTACCGCAAACCAATTGTTTTCTTTGTTTTATGGTC
AGTTACACTTTGAAGAATTTGTCGAAAGTTATCGCACTGCGGTGGAGGCC
GTCGTCGGTTCAGTGGTAAGGCACTGACTACTTGTTGGCCCGCTTGGCTT
TCACACAAACACGGAAAACATGAAACTCGGAAATAAAAGGGGGGGTTTCA
TGGTTGGCGGAGGAGCGGAATCGGCCCTTTTTTCGGACGGAGTGGCGGAA
TTTGGCGAAAATTTAGACGGAATTACGGAAATTGGATTCTCTGACGGAGG
CGGAAAATTAGACAATTTTAGTGCGGAAAAACGGAATTTAGCAAAAAAAA
TTGCGGAATTTCAGAATCGGTAAAAAATATTCAAAATTTGCGGAATTTTC
GACAAAAATATTGAATTTCAAAGGAATTTACGGTGACGGAATTTTGGTTC
AATTTAAGACGGTATGACGGAAATTGGAGAAAAAATTGGCGGAATTGCGG
AATCGGGTACCCCCTGAACCCCCCCATAAAAGACTGGAATGGACAATCGN
GCTTGGCTTTCACACAAACACGGAAAACATGAAACTCGGAAATAAAAGAC
TGGAATGGACAATCGAATAGGATTTTTTCTAAAAGGCTGGCCAACAAGTG
GCTTCATTTCCCATCCAGTAGTTACACACCTATCAAAAACGCTCAAAGCG
TGAGGAGACTGGGTTAGAATTTACCAGGGGGAGGATTGACATCAAACTGA
TTGTTGCGGTGATTTTAATACAAACAAAGAGTTTCGTCATCTCTTCTATC
ATTAAACTCAAACCCAGTTTTCGCGCGCTTCAGAGGGTTTATACACAGAT
ATTTAAGCCCGAAGGGCTAGATAGGCAACTTTAAGCTTTCTCCAGCAAAA
AAAAGTGAAGCAAAAATTTGACTTTTTAAATTTCGTGCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTATTTTAGTCACGTGACTCTGGTAGGAAAT
CCTTCCAAAGATGAGCTTCACTTTTTGATAAAAGCTGCAAATCTAGCCCT
TCGGGCTTTACAGATATCTGTGGGTTTATAGTGGTCTTGCAGACTAGAAT
CGGTTTAATACGGTAATATGGGTGTTATATAATAATACGATAGTTGTTAC
GGGATAATAGCACCAGTTTGTCTAAAATACAATTTGTCCCTTCCATTATT
CTTTGTTTGTTTGTTTTGCAGCGAACGTTCTCGTTTCCTCAAACAGGTCA
ATTATGCTCAACTATCAACCGTGCAGGAGGAGTCCATACCAAATGTGCAC
CAATGACTAAAAGGTATCAACATATTGTGGTGGATAATTTGAGACATTCT
ACAATCAAATAAATATCAAACCGTGAAGACAAGGTCTTTTTTTAATACAA
GATCTTGTATCAAAACGCTCGCAAAGTAGATATATTTCAGCGTTTGGCTT
AGATGGGGTTTCGGATTATGTCTGATTTGCTTTTTCGGATCAACTCTTTA
TTTCCGTTACAACAATTCTTATTTGAAATAGAACGTCAGAACGTTTCCAT
TGAACTGTCGAAAATTTGACGCGATTCGTGTAGAAAGAGTCTTTGTAGAC
TAGAACTCAAAATTCAGCGGTCGTTGAAGGCTTACAAACGAAGAAAACAA
TATCTCGAAAAGGAAGAGCCTATAAAGTAACGAGTAATCACAAGAAATTT
TCTTCACTTTTTTCTTTAGATATTTCTTACATTATCAATGGGTGCCTTTT
TACGTGGTTAGTTTGGCTATCCTATACTACGTTCCATATCTAATCTTCAA
GTCGGTCAACTCAGATCTCATCTCACTGGTGGATACAGTGGAAACCGGCA
ATCTACGAGATGTGGATAAGATTGCCAACAACTACTTTAACTATCGCATC
AATTCTAAAGTCAAGATGAAGATCATTGTTTGGGTAAACCTTATGATTAA
GGTATTGTTTACGAAAAGCCTCACTTTGTCTTAGTGTATCCTAGGTTTTG
TTACGTTACTGATAGTCGCATGAGGGTATCTATGGTACCCCAGTAAACAT
CAATGGTACGAGGTTGCTTTTGATAACATGAAAATTGAGTTTTATTTCCT
TTATTAACTGGAGCACACTTAATCACAGTAACCAAAACTTATGCCTGGTT
TGAAAATGATTTTACTTCATCACGCAGCAAGGGCAGCGATTTCATGATAT
TACTAAGACAGTTACTGGGCAGTTACAACGGAGGCCAGAAAGGAATTTAC
GAGGAAAAGTTTTATTATTATCTTATAGAAAGATGGTCCCTAGAGCCTCC
TCGACGTGTAAAAATGGGTATGGTACATGGCTCATTAGTGATTGTCACAT
GCAAGCCCATAGGATGCATTTTCATTTTGAGGGGGCAAAGTGAGAAATAT
AAGCCGAGGGCGATGCCATGGTTTGGCCCGAGAGAGAAAATTTCGCAATT
TAAGGTTGCTGGGAAACGCATCTAATTAAAGGATTATGTTCAAANGGGGC
AAAGTGAGAAATATAAACCGAGGGCCATGCCATGGCTTGGCCCGAGGGAG
AAAAATTTCGCAATTTAAGGTGTCTAGATTGCTGGGAAACGCATCGAATT
AAAGGATTATATTCAAAATAAAGCCATTGATACAAGATTTATCAAATGGA
AAAACTTTTTAGGGGGAAATGCCCCTGTGCCCCCTCCCCCGGTTACTACG
GGCCTGACATGTAATCTTATTGTTCAGGTTATTTTCATTGTCGTTAACAT
CTCTGGCTTCTTATTGACCGATTACACAATGGATGGACGATTTATCGATT
ATGGTCTTAACTGGATCAGTTGGAATGATGTGCCCAACCATATTGCTCAT
GACATTGTGAAAAGAGGAACACCAAAACCTGGCGATCATTTCTTGCCATC
TGTCGGAATGTGTGATATCCACGAAGCGCTGAATGACAAACGTGGTATTT
ACATCGATAAGTAAGTGCCCTTAGAAAATTCTCATCATGAAATGTTGAAG
TTTTATGCTAATTTGACAATAAGCTTTGTTTCTTATACAAAATAAAGATC
ATCATTGGATGTACAAACTTTTGCGAGCAGAAACTTTCGCGAGGTCAAAA
AATCGCGAAATTCACGACATTTACTTTCGCGAATTTGAGGAAAAAATGTT
TTTCGCGACCATAAAATTTTGCAAATCGTTGGATAAAAATGAGAATTTTC
GAATGAAAATTACCTTAACAGTGAAAATATTCCTTAAATCCGATAAGGAC
AGTTGCTCTTGGACATAGGATTAAAGAAAGACATTAAAGGTTAATAATGT
ACCGAAAATTTGATATTTATTACGATTTCGTGGTTTTATAGATTTCAAAC
GTTTTTGAGAATTTTTCGCGAGCATAAACTTTCACGAATTGCCCTGTCAA
GAATTTTCAAAGACATTTACTTTTGCGAGAAAGGCGAAAATTCGCAAAAA
GCGAAAGTTTCTGCTCGCGAAAGTTTGTACGCCTAAAGTATCTTTTTTTA
TTTCAGACACAAAGTGATCTGTGAAATCAGCCAAAACATTCGATACCAAT
ACAATTTTATCATTCTATGGTTCTTCTTTGCTTCTGGTTTGGTCATCTCA
TCATTTGGTCTTCTCCATTCAATTTTCAAACTTCTCAAATCAATGTTTTG
GGTTTACTCACCAAAGTTGTTCGACCATGAAACATCACTATCTAATCGCG
TTCATTCTCAACTCACACTCAGAGAGATGGAATATCTTGATAAGATTCGT
CAGATGGATATGACAATGTACGGCGAGATTCTCCGGGAATTGACAAGATA
TAAACCAAGTATTGGCTCTATTAAGAAGTTTGCACCTCAAACTACATCTG
AGATGATTACATTGCTACCATCAGCACCAAAAGAAATACAAAATCATTGG
GATAGACTTGTTTGATTCCAATCTTCGTTCGGTCTTGAATGGAATCTTTG
ACTATTTGGTGAATAGAGTAGGATACAGAACGGCTACACTAAGCTTACAC
TAAACATCAAAGAAATGCCCTTTAATTAATGTTACAAAACATCTATCTAG
TGTTAGATAGAGGTTGAAACATCAGCCGAACAAGTCAGTAGTCAAAACAC
ATCCAGTCCACAACACTTCATCGAAATGGCAAGAACTGCCATCACGAGAA
TTAGTTCTCCAAAAGGAAGGTGTTGTTGTTCCGAAACAGGAAAGAAAAAT
GGAATTAGGAGGCGGTACCTGGTGTATTTCCTAACTATCTGTTGAATGTT
ATTTATTTATCTTTTATCCATGAGCATTTCCGGAGTTCACAATACCTACC
GTCATTTCTCTAATTTATCGCGTCCTCTAATTCATACGGATCAAATTGGT
TTGAAAAATTTGGACCAATATTTTTCCTCTAATTATTAGTTCTGGACCTT
TTTTACCTATTTCTGATTTTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016856	XLOC_016856	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000753	supercontig	sc0000753:35762..43033 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.521188	0	0	0	0.605003	0.0271173	0	0	0.772992	1.23176	0	0	2.4647	2.04702	2.03307	3.41925	5.11786	2.61502	0.292903	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00029536 vs. Swiss-Prot (Human)

BLAST of TCONS_00029536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00029536 (transcript) - C. hemisphaerica