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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029540 ID=TCONS_00029540|Name=TCONS_00029540|organism=Clytia hemisphaerica|type=transcript|length=796bp
GCTTAGCTCTTTCAAATAAATTATGTATTctcatttgtttttcttctttt
ttcagaaaagtaaaaaataaacaaaatagtaGAATAAAAAGGTGCAATGA
ACACATTTGGAAACTTGCTGCGTGTTTTACCACGTGTTCCTTTGTTGCCT
ACCCAACGACTTCTCATCGTACCATCATCCAATCGTATTTGTGGAGCTTT
AAACTCAACATGGGTACCAGACAATCTACCTAAATACCGTGATGGTTTTA
ACGAAATTCCGGAACTAGAAACAGCCGATCCTGTTGTCCAGAAATTATTC
AGTCTCGAAATGGCGGATGGGATTGAGACACGTAAAGTATTACGAACAAT
TAACACTGATAAATATGAAACAAAGCTGGAGAAAAACATAGCGAATAACA
CTCTACATATTCGAATGTTGGTTGAACAGTTAAAACAAAACCATaaagat
aaacaaaacaaaGTCTTCTTGATTTGGGCAATTGATCAACGTAAAAAGCG
ATTGAGACGCTTACAGAAACTAGATATCAACAAATATAATTCTTTGATTG
AAGAGTATGATATTCCTCCTCTTGAAAGTCCTCAAGATCCACAGAATAAG
TACAAATTCCGTAAATTCAAGATCAATGTACCGctggaaaagaaaagaaa
cattgaAGATTTCGAAAAAGATCGAAATTATTAAcagatatttttgtttg
gttttaaaATATAGAGGatgtagattttttatttttttgaaaaatgaaaa
tcattttctttaaagaaaggtATTGATGTCATGACACCGAAATCCT Run BLAST on NCBI protein sequence of TCONS_00029540-protein >TCONS_00029540-protein ID=TCONS_00029540-protein|Name=TCONS_00029540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MNTFGNLLRVLPRVPLLPTQRLLIVPSSNRICGALNSTWVPDNLPKYRDG
FNEIPELETADPVVQKLFSLEMADGIETRKVLRTINTDKYETKLEKNIAN
NTLHIRMLVEQLKQNHKDKQNKVFLIWAIDQRKKRLRRLQKLDINKYNSL
IEEYDIPPLESPQDPQNKYKFRKFKINVPLEKKRNIEDFEKDRNY Run BLAST on NCBI transcript from alignment at sc0000753:86070..86865 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029540 ID=TCONS_00029540|Name=TCONS_00029540|organism=Clytia hemisphaerica|type=transcript|length=796bp|location=Sequence derived from alignment at sc0000753:86070..86865 (Clytia hemisphaerica)
AGGATTTCGGTGTCATGACATCAATacctttctttaaagaaaatgatttt
catttttcaaaaaaataaaaaatctacatCCTCTATATtttaaaaccaaa
caaaaatatctgTTAATAATTTCGATCTTTTTCGAAATCTtcaatgtttc
ttttcttttccagCGGTACATTGATCTTGAATTTACGGAATTTGTACTTA
TTCTGTGGATCTTGAGGACTTTCAAGAGGAGGAATATCATACTCTTCAAT
CAAAGAATTATATTTGTTGATATCTAGTTTCTGTAAGCGTCTCAATCGCT
TTTTACGTTGATCAATTGCCCAAATCAAGAAGACtttgttttgtttatct
ttATGGTTTTGTTTTAACTGTTCAACCAACATTCGAATATGTAGAGTGTT
ATTCGCTATGTTTTTCTCCAGCTTTGTTTCATATTTATCAGTGTTAATTG
TTCGTAATACTTTACGTGTCTCAATCCCATCCGCCATTTCGAGACTGAAT
AATTTCTGGACAACAGGATCGGCTGTTTCTAGTTCCGGAATTTCGTTAAA
ACCATCACGGTATTTAGGTAGATTGTCTGGTACCCATGTTGAGTTTAAAG
CTCCACAAATACGATTGGATGATGGTACGATGAGAAGTCGTTGGGTAGGC
AACAAAGGAACACGTGGTAAAACACGCAGCAAGTTTCCAAATGTGTTCAT
TGCACCTTTTTATTCtactattttgtttattttttacttttctgaaaaaa
gaagaaaaacaaatgagAATACATAATTTATTTGAAAGAGCTAAGC Coding sequence (CDS) from alignment at sc0000753:86070..86865 >TCONS_00029540 ID=TCONS_00029540|Name=TCONS_00029540|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000753:86070..86865 (Clytia hemisphaerica)
TTAATAATTTCGATCTTTTTCGAAATCTtcaatgtttcttttcttttcca
gCGGTACATTGATCTTGAATTTACGGAATTTGTACTTATTCTGTGGATCT
TGAGGACTTTCAAGAGGAGGAATATCATACTCTTCAATCAAAGAATTATA
TTTGTTGATATCTAGTTTCTGTAAGCGTCTCAATCGCTTTTTACGTTGAT
CAATTGCCCAAATCAAGAAGACtttgttttgtttatctttATGGTTTTGT
TTTAACTGTTCAACCAACATTCGAATATGTAGAGTGTTATTCGCTATGTT
TTTCTCCAGCTTTGTTTCATATTTATCAGTGTTAATTGTTCGTAATACTT
TACGTGTCTCAATCCCATCCGCCATTTCGAGACTGAATAATTTCTGGACA
ACAGGATCGGCTGTTTCTAGTTCCGGAATTTCGTTAAAACCATCACGGTA
TTTAGGTAGATTGTCTGGTACCCATGTTGAGTTTAAAGCTCCACAAATAC
GATTGGATGATGGTACGATGAGAAGTCGTTGGGTAGGCAACAAAGGAACA
CGTGGTAAAACACGCAGCAAGTTTCCAAATGTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029540-exon-sc0000753-1491911889:86070..86865 | TCONS_00029540-exon-sc0000753-1491911889:86070..86865 | Clytia hemisphaerica | exon |
| TCONS_00029540-exon-sc0000753-1510915933:86070..86865 | TCONS_00029540-exon-sc0000753-1510915933:86070..86865 | Clytia hemisphaerica | exon |
| TCONS_00029540-exon-sc0000753-1575043694:86070..86865 | TCONS_00029540-exon-sc0000753-1575043694:86070..86865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000753 | supercontig | sc0000753:86070..86865 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
The following BLAST results are available for this feature:
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