TCONS_00029585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029585
Unique NameTCONS_00029585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029585 ID=TCONS_00029585|Name=TCONS_00029585|organism=Clytia hemisphaerica|type=transcript|length=2437bp
CTGGTGTAGTGGTGATAAAGTTACGTGACTCCAAAACATTCTCCAACGAA
ACTTTCATCTCCAGAGATATTTATAGGCATGTGGTTGTTATAACGTTCAT
CTGACGTTCAACCTTGGACGTTGGCAGGACATATCATTGATTCTAAGCTT
TGTTTTCCTCAAACTACAATAAATCTACATTGAAATGTTAATTCAACTAT
ACATTTACACGTGTTattgtaattttctttcttatagTGTTCAAaacctg
aaagaaaaaaaagcgtTGACAAGTTGACATACAATACGCATGCGCCGAAT
CTTAAAAAATGGTTAACTTAGAACGAGACGGATTAGGAAAAGAGCGATTG
GATCATTTCTTTTCTTACGATGGTCAGAAATGTGCTGACACAGAACCTGA
TAAGAATAATAATCGAAACAGCCGCAGATTGAGCCGGGACAGCCGTCGGA
TAAGCCGTGACAGTATCAAGAATAAGATAGATATTGAAAGTCAAATCATG
CCTTCATCGAAGgaatatcaatttttaaatggACATAGTCAGATAAATAC
CGGAcatgaaagcgaaagtgaagaATATATTGATTTAAAACGTGACCGGT
ACTGCAACACGCCGTTACGACGTCGTGAAAGTTTAAGTAACGGTAGCACG
TGTGCCAGTAACGGTGGCAAAAAGATGAGTAATTTAGAGGGGATTAAAGA
ATTGTTAGCATACAAAAGACAACGTTTCCAAAGTATGGATTCTTTCGAAT
CGACCGTCTCCTTAAATTCAAGATCAAAACGTCTTGTCTGTAAAGACGGC
TTTGTTGACATCAAATATTATAATATTCCCGGTTATAGCTCCAGATTTGc
taaagatttttttcatactTTAATGGACATGAAATGGAGGTATATTACTG
GTCTATTTACCATCAGTTTCTTGCTAACTTGGATCGTCTTTGGAACAACC
TGGTTCCTTATCGTGTACCATCGACCCGACAAAAAGTGTCTCGATAATGT
AGATTCTTGGATCAGCGCCTTCTTATTTTCAATCGAGACACAGACAACGA
TTGGATACGGTGGGCGGGCGGTGACGCCTAATTGTCCGGAGGGTGTTTTC
TTACTCGTTATTCAAACGATTGTTGGAATGTTTGTCAACTGCGCCATGTT
GGGTCTACTGTTCGCCAAATTAGCGCGCCCGAAAAACCGAGGTAAAACAA
CCATGTTTTCTAAACGTGCCGTGGTTACAGTACGTGACGGTCATTTGTGT
TTGATGTTTCGCTACGTCGATATGCGACACCGTCGGTTGTTAGACACTAA
CATGCGTTGCGTAATCATACGACCAAAGCTGACTGACGAAGGGGAGTTTA
TACCAATTGATATGGCGGATTTGAAATTAACGATCGACTTCCAGCAGGAG
GAATACTCTATGAGATTATTTCCANCCAAGCTGACTGACGAAGGGGAGTT
TATACCAATTGATATGGCGGATTTGAAATTAACGATCGACTTCCAGCAGG
AGGAATACTCTATGAGACTATTTCCGCTTTTCCCTCTCACAATTATTCAC
GTGATCGACGAAAAGAGTCCCCTCTACGCAATGTCTAAAACACAACTTGA
ACAAGCCGAGTTCGAAATCATCCCCATCCTTGAAGGTACTGTACCAACAA
CAGGTAACTCAACTCAAGCCTTAACCTCGTACCGGCCAAATGAGATTTTA
TGGGGCCACCGATTTAAGCCCGTTTTCACTGGAATGCATATCGGTCAAAA
GATCAATCGTATAGACTTGAGTACCCTTCATGACACTTACAAAGAAAGTA
ATACACCACCGTGTTCAGCCGAAATGTTCTACAAAACTCAATGCAAGGTT
GATGAGGGGGATGATGATTGCTCCAGTGTTTCAGAATCAAACGGATATGA
GAGTGGACCAGCATCAACTTATTCGACATCTTATAATCAATATAGTACTA
CAAAGACTTTTCTTACAGACGTCGAGGAATTGAGTTTAGACTTGAACAAA
GACTACATGCAGCACATACCACTAATGAAAGAATCTTCGGCTTGATTAAG
AATGACATTAAAAACTCTTGCACAGTTCTATCGGGAAACTTAACTGTTTA
TATGACCAAGATTCTGTCATTAATTCATAATCAGTTTTGCGAGGACGctt
taagaaaatttattttactaGTACTTAGTAAGTTTGTTTAGATATCATTA
TAGAGTAAATTCCATTGATTGGAccattccattaaatttccatacataGA
GGGATGGGCGGTTTCTTGGAAATGCGTAGATACCcgctgaaaaatggaaa
aatttgcaaaaatttccttggaaaatttATACCTTAAAGTGACGGTGGAT
GAActaaatcagtcttttaccccttggaaattttaaaataatttttttat
ctcctggaaaaattaagaaaaaaacactattttagAC
Run BLAST on NCBI

protein sequence of TCONS_00029585-protein

>TCONS_00029585-protein ID=TCONS_00029585-protein|Name=TCONS_00029585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp
MVNLERDGLGKERLDHFFSYDGQKCADTEPDKNNNRNSRRLSRDSRRISR
DSIKNKIDIESQIMPSSKEYQFLNGHSQINTGHESESEEYIDLKRDRYCN
TPLRRRESLSNGSTCASNGGKKMSNLEGIKELLAYKRQRFQSMDSFESTV
SLNSRSKRLVCKDGFVDIKYYNIPGYSSRFAKDFFHTLMDMKWRYITGLF
TISFLLTWIVFGTTWFLIVYHRPDKKCLDNVDSWISAFLFSIETQTTIGY
GGRAVTPNCPEGVFLLVIQTIVGMFVNCAMLGLLFAKLARPKNRGKTTMF
SKRAVVTVRDGHLCLMFRYVDMRHRRLLDTNMRCVIIRPKLTDEGEFIPI
DMADLKLTIDFQQEEYSMRLFPXKLTDEGEFIPIDMADLKLTIDFQQEEY
SMRLFPLFPLTIIHVIDEKSPLYAMSKTQLEQAEFEIIPILEGTVPTTGN
STQALTSYRPNEILWGHRFKPVFTGMHIGQKINRIDLSTLHDTYKESNTP
PCSAEMFYKTQCKVDEGDDDCSSVSESNGYESGPASTYSTSYNQYSTTKT
FLTDVEELSLDLNKDYMQHIPLMKESSA
Run BLAST on NCBI

transcript from alignment at sc0000756:64906..67342

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029585 ID=TCONS_00029585|Name=TCONS_00029585|organism=Clytia hemisphaerica|type=transcript|length=2437bp|location=Sequence derived from alignment at sc0000756:64906..67342 (Clytia hemisphaerica)
GTctaaaatagtgtttttttcttaatttttccaggagataaaaaaattat
tttaaaatttccaaggggtaaaagactgatttagTTCATCCACCGTCACT
TTAAGGTATaaattttccaaggaaatttttgcaaatttttccatttttca
gcgGGTATCTACGCATTTCCAAGAAACCGCCCATCCCTCtatgtatggaa
atttaatggaatggTCCAATCAATGGAATTTACTCTATAATGATATCTAA
ACAAACTTACTAAGTACtagtaaaataaattttcttaaagCGTCCTCGCA
AAACTGATTATGAATTAATGACAGAATCTTGGTCATATAAACAGTTAAGT
TTCCCGATAGAACTGTGCAAGAGTTTTTAATGTCATTCTTAATCAAGCCG
AAGATTCTTTCATTAGTGGTATGTGCTGCATGTAGTCTTTGTTCAAGTCT
AAACTCAATTCCTCGACGTCTGTAAGAAAAGTCTTTGTAGTACTATATTG
ATTATAAGATGTCGAATAAGTTGATGCTGGTCCACTCTCATATCCGTTTG
ATTCTGAAACACTGGAGCAATCATCATCCCCCTCATCAACCTTGCATTGA
GTTTTGTAGAACATTTCGGCTGAACACGGTGGTGTATTACTTTCTTTGTA
AGTGTCATGAAGGGTACTCAAGTCTATACGATTGATCTTTTGACCGATAT
GCATTCCAGTGAAAACGGGCTTAAATCGGTGGCCCCATAAAATCTCATTT
GGCCGGTACGAGGTTAAGGCTTGAGTTGAGTTACCTGTTGTTGGTACAGT
ACCTTCAAGGATGGGGATGATTTCGAACTCGGCTTGTTCAAGTTGTGTTT
TAGACATTGCGTAGAGGGGACTCTTTTCGTCGATCACGTGAATAATTGTG
AGAGGGAAAAGCGGAAATAGTCTCATAGAGTATTCCTCCTGCTGGAAGTC
GATCGTTAATTTCAAATCCGCCATATCAATTGGTATAAACTCCCCTTCGT
CAGTCAGCTTGGNTGGAAATAATCTCATAGAGTATTCCTCCTGCTGGAAG
TCGATCGTTAATTTCAAATCCGCCATATCAATTGGTATAAACTCCCCTTC
GTCAGTCAGCTTTGGTCGTATGATTACGCAACGCATGTTAGTGTCTAACA
ACCGACGGTGTCGCATATCGACGTAGCGAAACATCAAACACAAATGACCG
TCACGTACTGTAACCACGGCACGTTTAGAAAACATGGTTGTTTTACCTCG
GTTTTTCGGGCGCGCTAATTTGGCGAACAGTAGACCCAACATGGCGCAGT
TGACAAACATTCCAACAATCGTTTGAATAACGAGTAAGAAAACACCCTCC
GGACAATTAGGCGTCACCGCCCGCCCACCGTATCCAATCGTTGTCTGTGT
CTCGATTGAAAATAAGAAGGCGCTGATCCAAGAATCTACATTATCGAGAC
ACTTTTTGTCGGGTCGATGGTACACGATAAGGAACCAGGTTGTTCCAAAG
ACGATCCAAGTTAGCAAGAAACTGATGGTAAATAGACCAGTAATATACCT
CCATTTCATGTCCATTAAagtatgaaaaaaatctttagCAAATCTGGAGC
TATAACCGGGAATATTATAATATTTGATGTCAACAAAGCCGTCTTTACAG
ACAAGACGTTTTGATCTTGAATTTAAGGAGACGGTCGATTCGAAAGAATC
CATACTTTGGAAACGTTGTCTTTTGTATGCTAACAATTCTTTAATCCCCT
CTAAATTACTCATCTTTTTGCCACCGTTACTGGCACACGTGCTACCGTTA
CTTAAACTTTCACGACGTCGTAACGGCGTGTTGCAGTACCGGTCACGTTT
TAAATCAATATATtcttcactttcgctttcatgTCCGGTATTTATCTGAC
TATGTccatttaaaaattgatattcCTTCGATGAAGGCATGATTTGACTT
TCAATATCTATCTTATTCTTGATACTGTCACGGCTTATCCGACGGCTGTC
CCGGCTCAATCTGCGGCTGTTTCGATTATTATTCTTATCAGGTTCTGTGT
CAGCACATTTCTGACCATCGTAAGAAAAGAAATGATCCAATCGCTCTTTT
CCTAATCCGTCTCGTTCTAAGTTAACCATTTTTTAAGATTCGGCGCATGC
GTATTGTATGTCAACTTGTCAacgcttttttttctttcaggttTTGAACA
ctataagaaagaaaattacaatAACACGTGTAAATGTATAGTTGAATTAA
CATTTCAATGTAGATTTATTGTAGTTTGAGGAAAACAAAGCTTAGAATCA
ATGATATGTCCTGCCAACGTCCAAGGTTGAACGTCAGATGAACGTTATAA
CAACCACATGCCTATAAATATCTCTGGAGATGAAAGTTTCGTTGGAGAAT
GTTTTGGAGTCACGTAACTTTATCACCACTACACCAG

Coding sequence (CDS) from alignment at sc0000756:64906..67342

>TCONS_00029585 ID=TCONS_00029585|Name=TCONS_00029585|organism=Clytia hemisphaerica|type=CDS|length=1737bp|location=Sequence derived from alignment at sc0000756:64906..67342 (Clytia hemisphaerica)
TCAAGCCGAAGATTCTTTCATTAGTGGTATGTGCTGCATGTAGTCTTTGT
TCAAGTCTAAACTCAATTCCTCGACGTCTGTAAGAAAAGTCTTTGTAGTA
CTATATTGATTATAAGATGTCGAATAAGTTGATGCTGGTCCACTCTCATA
TCCGTTTGATTCTGAAACACTGGAGCAATCATCATCCCCCTCATCAACCT
TGCATTGAGTTTTGTAGAACATTTCGGCTGAACACGGTGGTGTATTACTT
TCTTTGTAAGTGTCATGAAGGGTACTCAAGTCTATACGATTGATCTTTTG
ACCGATATGCATTCCAGTGAAAACGGGCTTAAATCGGTGGCCCCATAAAA
TCTCATTTGGCCGGTACGAGGTTAAGGCTTGAGTTGAGTTACCTGTTGTT
GGTACAGTACCTTCAAGGATGGGGATGATTTCGAACTCGGCTTGTTCAAG
TTGTGTTTTAGACATTGCGTAGAGGGGACTCTTTTCGTCGATCACGTGAA
TAATTGTGAGAGGGAAAAGCGGAAATAGTCTCATAGAGTATTCCTCCTGC
TGGAAGTCGATCGTTAATTTCAAATCCGCCATATCAATTGGTATAAACTC
CCCTTCGTCAGTCAGCTTGGNTGGAAATAATCTCATAGAGTATTCCTCCT
GCTGGAAGTCGATCGTTAATTTCAAATCCGCCATATCAATTGGTATAAAC
TCCCCTTCGTCAGTCAGCTTTGGTCGTATGATTACGCAACGCATGTTAGT
GTCTAACAACCGACGGTGTCGCATATCGACGTAGCGAAACATCAAACACA
AATGACCGTCACGTACTGTAACCACGGCACGTTTAGAAAACATGGTTGTT
TTACCTCGGTTTTTCGGGCGCGCTAATTTGGCGAACAGTAGACCCAACAT
GGCGCAGTTGACAAACATTCCAACAATCGTTTGAATAACGAGTAAGAAAA
CACCCTCCGGACAATTAGGCGTCACCGCCCGCCCACCGTATCCAATCGTT
GTCTGTGTCTCGATTGAAAATAAGAAGGCGCTGATCCAAGAATCTACATT
ATCGAGACACTTTTTGTCGGGTCGATGGTACACGATAAGGAACCAGGTTG
TTCCAAAGACGATCCAAGTTAGCAAGAAACTGATGGTAAATAGACCAGTA
ATATACCTCCATTTCATGTCCATTAAagtatgaaaaaaatctttagCAAA
TCTGGAGCTATAACCGGGAATATTATAATATTTGATGTCAACAAAGCCGT
CTTTACAGACAAGACGTTTTGATCTTGAATTTAAGGAGACGGTCGATTCG
AAAGAATCCATACTTTGGAAACGTTGTCTTTTGTATGCTAACAATTCTTT
AATCCCCTCTAAATTACTCATCTTTTTGCCACCGTTACTGGCACACGTGC
TACCGTTACTTAAACTTTCACGACGTCGTAACGGCGTGTTGCAGTACCGG
TCACGTTTTAAATCAATATATtcttcactttcgctttcatgTCCGGTATT
TATCTGACTATGTccatttaaaaattgatattcCTTCGATGAAGGCATGA
TTTGACTTTCAATATCTATCTTATTCTTGATACTGTCACGGCTTATCCGA
CGGCTGTCCCGGCTCAATCTGCGGCTGTTTCGATTATTATTCTTATCAGG
TTCTGTGTCAGCACATTTCTGACCATCGTAAGAAAAGAAATGATCCAATC
GCTCTTTTCCTAATCCGTCTCGTTCTAAGTTAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016897XLOC_016897Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029585-proteinTCONS_00029585-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029585-exon-sc0000756-1491911889:64906..67342TCONS_00029585-exon-sc0000756-1491911889:64906..67342Clytia hemisphaericaexon
TCONS_00029585-exon-sc0000756-1510915933:64906..67342TCONS_00029585-exon-sc0000756-1510915933:64906..67342Clytia hemisphaericaexon
TCONS_00029585-exon-sc0000756-1575043694:64906..67342TCONS_00029585-exon-sc0000756-1575043694:64906..67342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000756supercontigsc0000756:64906..67342 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0159236	0.015528	0.036059	0	11.4241	7.16088	0.696057	1.09246	1.07348	2.29369	1.00023	1.56954	1.0908	0.758869	0.108503	0.0679237	3.56222	0.428828	2.57292	1.78901	8.28295	8.20042	2.53782	2.12466	2.20544	1.29694	0.109172	0.093209	0.0176739	0.0180069
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016449K_chnl_inward-rec_Kir
IPR013518K_chnl_inward-rec_Kir_cyto
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0005242inward rectifier potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006813 potassium ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005242 inward rectifier potassium channel activity
Blast
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BLAST of TCONS_00029585 vs. Swiss-Prot (Human)
Match: KCNJ5 (G protein-activated inward rectifier potassium channel 4 OS=Homo sapiens GN=KCNJ5 PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 3.566e-82
Identity = 141/358 (39.39%), Postives = 209/358 (58.38%), Query Frame = 3 
Query:  777 KRLVCKDGFVDIKYYNIPGYSSRFAKDFFHTLMDMKWRYITGLFTISFLLTWIVFGTTWFLIVYHRPDKK---------CLDNVDSWISAFLFSIETQTTIGYGGRAVTPNCPEGVFLLVIQTIVGMFVNCAMLGLLFAKLARPKNRGKTTMFSKRAVVTVRDGHLCLMFRYVDMRHRRLLDTNMRCVIIRPKLTDEGEFIPIDMADLKLTIDFQQEEYSMRLFPXKLTDEGEFIPIDMADLKLTIDFQQEEYSMRLFPLFPLTIIHVIDEKSPLYAMSKTQLEQAEFEIIPILEGTVPTTGNSTQALTSYRPNEILWGHRFKPVFTGMHIGQKINRIDLSTLHDTYKESNTPPCSAE 1823
            +R + K G  ++ + N+   + R+  D F TL+D+KWR+   +FT+ + +TW+ FG  W+LI Y R D           C++N+  ++SAFLFSIET+TTIGYG R +T  CPEG+ LL++Q I+G  VN  M+G +F K+++PK R +T MFS  AV+++RD  LCLMFR  D+R+  +++ ++R  +I+ + T EGEFIP++  D+ +  D   +                                      RLF + PL I H I++KSP + MS+ QL Q EFE++ ILEG V  TG + QA +SY   E+LWGHRF PV T   + +    +D +T HDTY E+NTP C A+
Sbjct:   51 QRYMEKSGKCNVHHGNVQ-ETYRYLSDLFTTLVDLKWRFNLLVFTMVYTVTWLFFGFIWWLIAYIRGDLDHVGDQEWIPCVENLSGFVSAFLFSIETETTIGYGFRVITEKCPEGIILLLVQAILGSIVNAFMVGCMFVKISQPKKRAETLMFSNNAVISMRDEKLCLMFRVGDLRNSHIVEASIRAKLIKSRQTKEGEFIPLNQTDINVGFDTGDD--------------------------------------RLFLVSPLIISHEINQKSPFWEMSQAQLHQEEFEVVVILEGMVEATGMTCQARSSYMDTEVLWGHRFTPVLT---LEKGFYEVDYNTFHDTY-ETNTPSCCAK 365
The following BLAST results are available for this feature:
BLAST of TCONS_00029585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNJ53.566e-8239.39G protein-activated inward rectifier potassium cha... [more]
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