TCONS_00030594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030594
Unique NameTCONS_00030594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030594 ID=TCONS_00030594|Name=TCONS_00030594|organism=Clytia hemisphaerica|type=transcript|length=2589bp
agaACGTGAAGATGAAAGTATCGTGACAACACAAGATTCAGACAGTGATT
GTGTTATTATCGAAAATACAGGACAAGgtAATGGCAAATATGTAGATCGA
CTTAATCAGATTAAATTTGACTCTAAGAAAGACATTCAGATACCTGgAAT
AACTTCAGAGGCTATATGTTATCTCGATGGTGACAAACGATTCCCTTTCT
GGAAAATCGCTTCAAAATCATTAGAAACCCTGCCAGTGGCTGAAAGCATT
CACTATGGAAGATACGATCGTAACAAGCTGTGTCCAATCCGAACTTTGTA
AATGCCAATTGCAGCTTTCTCGTCAACACTGATAACATGCTTAATGCAAA
AGACATCTTTTGTGATCTCCATGGGCATTGGGAACGTGCTGGAACCAAAA
GAATGAATTGTGTACCGGATAAAGGACGCCTAGTGAAAATTCCCGAAGGA
GAAATCAAAATAGATGATAANGGACATAATAAAAGTATTTTATTCAAGGA
CATATTTGGTAAAACCATCAATGATGACAAGGAGCCTGGGTTAGTAGATG
TGCTTGAAATCGAGGAATTTGAAAACGTTGTCAGAGGCTTGTCGACTAAG
TGGGAACAGATGGGGACTGgggaaaagaaatttagggACTATTTTTTGCA
ATATAAAGCAGACGACATACGCAATTGCATGACTGCCGAACTACGAGCAA
TGACAGGACTGGGGTTTCCCCCAAAACCCTACACCCAAAACCCGAACGAG
TCGAGTAACGCCAAACTAAAATCTGGCCTTGTCGACtcatgcaaaatgtc
attaaaagAAGTAGTTCAACTATTGCGTACTGCTTCGGAGTACCAAGAAG
AACAAGTCGAATTAGCTCTTTTGGGAAGGAACTCTTGGCGGCTTCTACCA
GAGTACAGACAACAATTTCCTAGCATTAACCGTATTTATCAAATGAACAA
GTCACAACGCGCAAGAAACGTTTCAATTCTTTATCTGTTGCTAACAACTC
GTCCACAACGGAATTTCAGATAAAAGCCGAGGAAACTGGACTTCTTTATC
CTCCAATGACAATTCTTAAGGACATATTCAATGATGGGTCTGTATTGCTC
AATCCGGACAGTATTACCGATGCCCCTGGAGCACCCACAGTAAAAATTGT
CAAGAATTTACACGACCCGTTACAACCATATAGAGTATCAATCAAAAATG
ATGGAATCGTATCTTGTCAACAGACATGTGACAGGTACAAAGCTTATGCT
ATTTGTGAGCACACCCTTAGTGTTTCTCAAAGAGAAGGGATTCAAGATAA
ATCTAttaacaaattaaaaagaaagcaaTCATCCAGATCCACAGGGcgaa
acctttctgatctgtgTAACGTCAACAAGGACCCAAAAACTGGAAAGAAA
GCTACCAAATCAACGTCAAAGAGAAAAGGGAAAAGAAAATCCAACAGtgt
attttcttacaccaacaCCCTTAATGATACCTCCAGTGTTGCCAGGCAAA
ACCCCGATATCATTGGTCAAGTTACCCATTCATCAATCAACCCCATCCAG
AATCAAAGCATCGCCTCGACATCCCAGACTGATCAGGAAATATCTTCAGA
AATGCGAATCCCAGAAACTATTTATCAAGATACCCATACCAATCGAGAAA
TGTCTTCAGTATTGAAAGAGCCTGAAAACATTGTTCGAGATACCCATTTA
TCAACCCTGCCCATCCAGGCTCAAAACATTGCCTCAATATCCCAGACTAT
TCCGGAAATACCTTCAGTAACGCAAAACCCTGAAACTGTTTATCAAGATA
CCCATTTATCAACCCTGCCCATCCAGGCTCAAAACATTGCCTCAATATCC
CAGACTATTCCGGAAATACCTTCAGTAACGCAAAACCCTGAAACTGTTTA
TCAAGATACCCATTTATCAATCCAGCCCATCAAAGCCCAAAGCATTGTTT
CGACATCCGAGACTAATCAGGGATCGTTTTCATTTTCGCGAAACCCGGGA
ACCAACGATGCCCATAAAGTCATAAGGAAAAGAGCTGGTACCCGTATTAC
TCAACCTTCTAAAGTGGTCAAAGAAATGCCAACAAAGATTATTCTAAAAG
CATCCAAACATGCAGTTCCACCTAGTGAGCGAAAAGAGCAACCACTTTTA
CCTTTGGGAAGACCACTCCCACCAATACCACCAATGCCAGAGCCTCAAAT
CCGTCCCTATGAAATAAAAAAGCGAGCAGGAAATGTTGCAACGTGTCATG
GATGTCGTAACGGCTTTAAGAAATCAGATAGCAGCTTGTTTGTGTTGTTC
AGGGAGGAGGAGGATTGGTTTccaaaagtagataaagaaaattataCGAA
ACAGTGGAGCACAAGCAAAAAAAACGCCGACGCCCGTTTATCACAAAAGA
ACATTTGACTGTACTTTACAAAGGTGATGAACGTCACAGCTAGTCTTGAA
TATGTGACTTTTGAGacttttgcaaagattttgaattttgtttttaggCT
TTATAGTCTGTATTGTCCAGACTAGATCATAGACAAAAATCCTGGTCTGA
CAATccattgttttagctttttgttaacttttgttttct
Run BLAST on NCBI

transcript from alignment at sc0000831:91850..96774-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030594 ID=TCONS_00030594|Name=TCONS_00030594|organism=Clytia hemisphaerica|type=transcript|length=4925bp|location=Sequence derived from alignment at sc0000831:91850..96774- (Clytia hemisphaerica)
AGAACGTGAAGATGAAAGTATCGTGACAACATTAGATTCAGACTGTGATT
GTGTTATTATCGAAAATGCAGGACAAGGTACTGTCAAACTTTTGCTAATC
TTCATTTAGCTTTTCAAAGTACCTTGTTTGTCAAATAGACAATTAAAAGA
ATAGTTTTATTATTCTAATTTTAGAGGGAAATAATTGTGATTTTTCATGA
AAAAGTTGATTTTGGACATTTTTTTGGGTGCTGATCTTTGATTAGTTTTT
GATGATTTTTGGGATCTGGTGCTGGTATGGACCTGGTTGGCCAGAAAACT
AANGTGTGCTGATTTTTGATTAGTTTTTGATGATTTTTGGGATCTGGTGC
TGGTATGGACCTGGTTGGCCAGAAAACTAAAAATCGATAAAATTGAGGTG
TATCGTTTTTCTGGCCTTTTTGTCTAGATTTTGATAATTGAAATATGGGG
TAGAATCATTTAAAGGGCACCCTATTGCATAGCCTATTCACCGATTTGAT
TACTGGATTACTTCAAATATATGAACAAAGTTGTTGTAATTTGACTTATA
ATTAGATGATTATTAAAATACTTATAAAAGCAGTTTTTAAAAACAGTAAA
ATTGGTAATTTTATAGAATTTTCGACAAATTTTCGAAAAACTGTCAAAAA
TACCTAATTTAATCTTTTTCAATGCTTCTAGTTCTACCCAATTTTATTTC
AATTGTCAAATCGAGGCAAAAACTTCAGAAAATAGGGAATCTGAAAAATA
TTATCAATTTCGACAAACGTCGGTCATCCCTCCCCCTCTACTAATTTACT
CTCTTTCTCAGAACGTGGAGATGAAAGTATCGTGACAACACAAGATTCAG
ACAGTGATTGTGTTATTATCGAAAATACAGGACAAGGTACTGTCAGACTT
TTATTAATCTTCATTTAGCTTTTCAAAATGTTTTCTTTGTCAAATGGACA
ATTAATAGAATAGTTTTATTGTTCTAATTTACTCTCTCTTTTTCAGAACG
TGAAGATGAAAGTATCGTGACAACACAAGAAACAGACAGTGATTGTGTTA
TTATCGAAAATGCAGGACAAGGTACTGAACAGTTTTTTTATCTACCTCGG
AGGTCCTAAAAATTAACCGATGTCCGTTTTTTCGTCTGTTCGTCCGTTCG
TCTGTTACAAGCTTTTCTCGGGATTGGCTAATTATTTTTTTTTTTTTTTA
CACAATGATGCAAAATGCCAAAATACCCAAGTTGTGACTGAGCCAAATTT
TCGAAAAATATTTTTTTGGGCAAATTTGGGCTAAATTGGTTTATTTTTTT
TCTGTTTTTTTTGGCAGAAATATAGAGGGCAAGGTTCTCTAAAAGATAGC
TGAAGTATTTTTCCCAGAAAATTGTTGTTTACCATAAAATACGAATTTTC
GTATTTGGGGAAATTTCCTTTTACCATTTCACAATTTTCATTAGACTAGC
TTGTTTATTTTTCCAGTCTGAATTTTTGTACAATTATTGCCATTTTTTCC
TTTTTCATCTTACGTTAATCATTAGGTAGGTTCATTCAGCATGTTGCTTG
TTTAAATTTGTTTCGAAAAGTCTTTCAAAGCTTTCTCAAGTACTACCAGT
ATTGAAAATGAAATTAGGTCTCGTGGATAGGGCAACAAGTCGAAAGATCA
TAGTTTAAGTATTTTTTCCTCTAACTACACCTCAAGTTAAAGTTTTGTGT
TACTTACTTTTTAATATTTTCATGTGAAAATTTCCGTTGTATTCTATAAA
AGATTACTATTATTTAAGTGATCTTTTTTTCTTCAGGTAATGGCAAATAT
GTAGATCGACTTAATCAGATTAAATTTGACTCTAAGAAAGACATTCAGAT
ACCTGGTAAGATTGTACTGTCGAACATGATAATATATTTTTGTGCACCCA
ACCCCAAGAAAGCCCCCATTTTTGCAAAGCGAATAAAGTACTTATGAGTA
AAGCGGTTTTTCTCTTGTGTGTATCTATATTATAATACATACGCTTATCT
CAGAAATCAATTCATCAAAATTCTCGCATCAAGCTTATTCGGTAATAATT
TTTTAAGACAATTCTATATTCGCTATGTGCATTTCCTTTGTCAGTGCAAA
TATTCCTCCTAAGGATGAATTACAATTAAACAAAACTAAATTTCGCAAGA
ATTGGTTTTGGTAAGAGCAATAACTTTTTGGTAATTGGCGAAATTTGCTG
AAATTTACGTCCGCGAAAATTTCTTCCCTTGGGGTAATCTATAAGGATCT
GTAATTAGTTTTTGTTAACAATAAAAAAAAACTTAGCAATGCGAGCGTTC
AGAAGTTATTGTCCCTTTGAATGAGAGTATATTAGGCTTTGCTCTCTTTA
ACGTAACAAACGTAGACATGATCGACTATCATTTCCAGACATTCTATCTA
AGGTGGATATTTTAAATTTTCTAATTTTAGGAATAACTTCAGAGGCTATA
TGTTATCTCGATGGTGACAAACGATTCCCTTTCTGGAAAATCGCTTCAAA
ATCATTAGAAACCCTGCCAGTGGCTGAAAGCATTCACTATGGAAGATACG
ATCGTAACAAGCTGTGTCCAATCCGAACTTTGTAAATGCCAATTGCAGCT
TTCTCGTCAACACTGATAACATGCTTAATGCAAAAGACATCTTTTGTGAT
CTCCATGGGCATTGGGAACGTGCTGGAACCAAAAGAATGAATTGTGTACC
GGATAAAGGACGCCTAGTGAAAATTCCCGAAGGAGAAATCAAAATAGATG
ATAANGGACATAATAAAAGTATTTTATTCAAGGACATATTTGGTAAAACC
ATCAATGATGACAAGGAGCCTGGGTTAGTAGATGTGCTTGAAATCGAGGA
ATTTGAAAACGTTGTCAGAGGCTTGTCGACTAAGTGGGAACAGATGGGGA
CTGGGGAAAAGAAATTTAGGGACTATTTTTTGCAATATAAAGCAGACGAC
ATACGCAATTGCATGACTGCCGAACTACGAGCAATGACAGGACTGGGGTT
TCCCCCAAAACCCTACACCCAAAACCCGAACGAGTCGAGTAACGCCAAAC
TAAAATCTGGCCTTGTCGACTCATGCAAAATGTCATTAAAAGAAGTAGTT
CAACTATTGCGTACTGCTTCGGAGTACCAAGAAGAACAAGTCGAATTAGC
TCTTTTGGGAAGGAACTCTTGGCGGCTTCTACCAGAGTACAGACAACAAT
TTCCTAGCATTAACCGTATTTATCAAATGAACAAGTCACAACGCGCAAGA
AACGTTTCAATTCTTTATCTGTTGCTAACAACTCGTCCACAACGGAATTT
CAGATAAAAGCCGAGGAAACTGGACTTCTTTATCCTCCAATGACAATTCT
TAAGGACATATTCAATGATGGGTCTGTATTGCTCAATCCGGACAGTATTA
CCGATGCCCCTGGAGCACCCACAGTAAAAATTGTCAAGAATTTACACGAC
CCGTTACAACCATATAGAGTATCAATCAAAAATGATGGAATCGTATCTTG
TCAACAGACATGTGACAGGTACAAAGCTTATGCTATTTGTGAGCACACCC
TTAGTGTTTCTCAAAGAGAAGGGATTCAAGATAAATCTATTAACAAATTA
AAAAGAAAGCAATCATCCAGATCCACAGGGCGAAACCTTTCTGATCTGTG
TAACGTCAACAAGGACCCAAAAACTGGAAAGAAAGCTACCAAATCAACGT
CAAAGAGAAAAGGGAAAAGAAAATCCAACAGTGTATTTTCTTACACCAAC
ACCCTTAATGATACCTCCAGTGTTGCCAGGCAAAACCCCGATATCATTGG
TCAAGTTACCCAGTCATCAATCAACCCCATCCAGAATCAAAGCATCGCNA
GGTCAAGTTACCCATTCATCAATCAACCCCATCCAGAATCAAAGCATCGC
CTCGACATCCCAGACTGATCAGGAAATATCTTCAGAAATGCGAATCCCAG
AAACTATTTATCAAGATACCCATACCAATCGAGAAATGTCTTCAGTATTG
AAAGAGCCTGAAAACATTGTTCGAGATACCCATTTATCAACCCTGCCCAT
CCAGGCTCAAAACATTGCCTCAATATCCCAGACTATTCCGGAAATACCTT
CAGTAACGCAAAACCCTGAAACTGTTTATCAAGATACCCATTTATCAACC
CTGCCCATCCAGGCTCAAAACATTGCCTCAATATCCCAGACTATTCCGGA
AATACCTTCAGTAACGCAAAACCCTGAAACTGTTTATCAAGATACCCATT
TATCAATCCAGCCCATCAAAGCCCAAAGCATTGTTTCGACATCCGAGACT
AATCAGGGATCGTTTTCATTTTCGCGAAACCCGGGAACCAACGATGCCCA
TAAAGTCATAAGGAAAAGAGCTGGTACCCGTATTACTCAACCTTCTAAAG
TGGTCAAAGAAATGCCAACAAAGATTATTCTAAAAGCATCCAAACATGCA
GTTCCACCTAGTGAGCGAAAAGAGCAACCACTTTTACCTTTGGGAAGACC
ACTCCCACCAATACCACCAATGCCAGAGCCTCAAATCCGTCCCTATGAAA
TAAAAAAGCGAGCAGGAAATGTTGCAACGTGTCATGGATGTCGTAACGGC
TTTAAGAAATCAGATAGCAGCTTGTTTGTGTTGTTCAGGGAGGAGGAGGA
TTGGTTTCCAAAAGTAGATAAAGAAAATTATACGAAACAGTGGAGCACAA
GCAAAAAAAACGCCGACGCCCGTTTATCACAAAAGAACATTTGACTGTAC
TTTACAAAGGTGATGAACGTCACAGCTAGTCTTGAATATGTGACTTTTGA
GACTTTTGCAAAGATTTTGAATTTTGTTTTTAGGCTTTATAGTCTGTATT
GTCCAGACTAGATCATAGACAAAAATCCTGGTCTGACAATCCATTGTTTT
AGCTTTTTGTTAACTTTTGTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017540XLOC_017540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030594-exon-sc0000831-1575043694:96745..96774TCONS_00030594-exon-sc0000831-1575043694:96745..96774Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1575043694:95889..95935TCONS_00030594-exon-sc0000831-1575043694:95889..95935Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1575043694:94920..94988TCONS_00030594-exon-sc0000831-1575043694:94920..94988Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1575043694:92976..94344TCONS_00030594-exon-sc0000831-1575043694:92976..94344Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1575043694:91850..92923TCONS_00030594-exon-sc0000831-1575043694:91850..92923Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1510915933:96745..96774TCONS_00030594-exon-sc0000831-1510915933:96745..96774Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1510915933:95889..95935TCONS_00030594-exon-sc0000831-1510915933:95889..95935Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1510915933:94920..94988TCONS_00030594-exon-sc0000831-1510915933:94920..94988Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1510915933:92976..94344TCONS_00030594-exon-sc0000831-1510915933:92976..94344Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1510915933:91850..92923TCONS_00030594-exon-sc0000831-1510915933:91850..92923Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1491911889:96745..96774TCONS_00030594-exon-sc0000831-1491911889:96745..96774Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1491911889:95889..95935TCONS_00030594-exon-sc0000831-1491911889:95889..95935Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1491911889:94920..94988TCONS_00030594-exon-sc0000831-1491911889:94920..94988Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1491911889:92976..94344TCONS_00030594-exon-sc0000831-1491911889:92976..94344Clytia hemisphaericaexon
TCONS_00030594-exon-sc0000831-1491911889:91850..92923TCONS_00030594-exon-sc0000831-1491911889:91850..92923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000831supercontigsc0000831:91850..96774 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02166e-06	0	0	3.61479e-09	7.64958e-06	5.55658e-10	2.12808e-06	1.25505e-07	3.52945e-06	7.93117e-09	1.85505	2.95632e-06	0	3.58081e-09	4.38068e-05	0	0.371792	8.21758e-06	0	0	0	3.09245e-10	1.62746	1.9022	0	2.07879	1.25388	0	4.48707e-09	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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