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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042534 ID=TCONS_00042534|Name=TCONS_00042534|organism=Clytia hemisphaerica|type=transcript|length=627bp
GAGATCTTAAAATCAGTTAAGTTTTCTTAAATTGAGATGACTATCTAgct
taagaaaattattttttacagtgTTAAAATCTCGTTCAATAACAGGTATG
AAGAAATCAAGGATTACAGTTTTTCATCTCATCAGTCAACTAATGGAAGA
GCTGTCGGACATTTTACACAGTTGATCTGGAAAGAGACCAAGAGCCTTGG
TTGTGGAATCAAAGAGATTCGTAAAAATGGCCGAATTGAAACCTACATTG
TCTCCAGATACTCACCAAGGGGAAATTCCATTCGCCGAAACTGGGGTGAA
AGCTCAAGTCAAGCAAGAATTAGAGTTTATGGTGCTAATGTTCAAAAGAG
AAATATTGGAGTTCAAACGCCAACACTTCCAGAACTCGAGAAATTGACTG
GTGGAAGTGGAACTGGACCTATCCCAACAGGTGGACCACTTCCACAAACC
ACCCAACGCCCTGCAACACCACCCTCCAGTTGTTCAAACGCCCGTGGTGA
TGACTATTGTAATTATGTGTTAAGATGTGGGCGTAATTACTTATGTAATG
GTAGACATAAGAATTACTTCATGCAAGACTGTTACAAAGCATGTACCTTT
tgttaaacaaaaatattttgataagNN Run BLAST on NCBI transcript from alignment at sc0003479:9615..11470- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042534 ID=TCONS_00042534|Name=TCONS_00042534|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at sc0003479:9615..11470- (Clytia hemisphaerica)
GAGATCTTAAAATCAGTTAAGTTTTCTTAAATTGAGATGACTATCTAGCT
TAAGAAAATTATTTTTTACAGTGTTAAAATCTCGTTCAATAACAGGTATG
AAGAAATCAAGGATTACAGTTTTTCATCTCATCAGTCAACTAATGGAAGA
GCTGTCGGACATTTTACACAGGTATCACCTCCTTACTCCAGATGAGCATA
ACTCTACTTTCTTTATGACTTGGTATGGTTAAGTATCTTAGTTAAAAACC
CGTCATTAAAAGAAAACATTTGATTTTGAAGAGATGATTCCTTATGAAAA
CCTTTTTTTAACCAAAAATGAAAACCTCTCCTACACTCCTGGTTACCCCT
GGTTCGTTTTGATCTTAAAATAGGTTATGATGATGCTCAGGTACTCCGTT
CTAAAGACCTTCCTTGTTATGAGGTGTTGTAATTAAGTGGTAACTGCATT
TAGTAGTCAAGAATTGAACCAGGAAAATAATGAATGATTTTTCATGACTT
TATGGGGGGGGGCGTACGGGTTTGACGGTGTGACGGTATTAACCCTTTTT
TCTATCGGTGTTTCGGTGTTTGAAGAAAAAAGTGACGGTATTTCGGTGTC
AAACATGCCCTGCGGTGACAAAATTAAGGATTTTACCAAATTTTGCTGTC
GGTGTTGACGGGAATCCAAGAAATATGCGTCGGTATTTCGGTGTCAAACA
TGCCCTGCGGTGACAAAATTAAGGATTTTACCAAATTTTGCTGTCGGTGT
TGACGGTAATCCAAGAAATATGCGTCGGTATTTCGGTGTCTGCGACCCCC
GTACGCCCCCTCCTTTATGTAATAAATATTTTGTATTTCAATCTCTCTTA
TAAAGTTGATCTGGAAAGAGACCAAGAGCCTTGGTTGTGGAATCAAAGAG
ATTCGTAAAAATGGCCGAATTGAAACCTACATTGTCTCCAGATACTCACC
AAGGGGAAATTCCATTCGCCGAAACTGGGGTGAAAGCTCAAGTCAAGCAA
GAATTAGAGTTTATGGTGCTAATGTTCAAAAGAGAAATATTGGAGGTAAA
TAAAATATCTGCTTTGAATAAATACACGGGTTGCAAAATTATATTAATGC
AGTCAAAACATGTGATTACTTGGAAAAGTTCACGTGATTTTTTTCCCATG
TTACTTGCTTTACAACTTCCAACTGATAACTTTATTAGTGTCAATAAATT
CGAACCAATCAGAAATAAATATCATGTAACAAGCACATAAAAAATTCGAG
CAAAAGCGTGATTTGTCTTCAGACGTTCATTTTGCAACCTGTGTATTAAA
GGTTTTAGTTTTTCTCCAGAGATATCGAGGAGAAATGGCTGATTATGGTC
AAAAGAATTCAATGCTTCAAAAAAGGGGATCCCGGCTCCCTTCCTCAATG
TTCCGTTCAGCTTTTAGATAGCCGAGCAAACTTGGCCGTTGACCCGGCGA
AACTAATCTAAAAGTCTAAATTGCTCGGATAACGACGTAAAACATCTTAC
TGAACACTAGGTGCAATTAAAAAGAATATTCTCCCGTATTTTCAAACAAC
ATTGTAGCAATCAGATAAAATGTCGTATTTTTATATCTAGTTCAAACGCC
AACACTTCCAGAACTCGAGAAATTGACTGGTGGAAGTGGAACTGGACCTA
TCCCAACAGGTGGACCACTTCCACAAACCACCCAACGCCCTGCAACACCA
CCCTCCAGTTGTTCAAACGCCCGTGGTGATGACTATTGTAATTATGTGTT
AAGATGTGGGCGTAATTACTTATGTAATGGTAGACATAAGAATTACTTCA
TGCAAGACTGTTACAAAGCATGTACCTTTTGTTAAACAAAAATATTTTGA
TAAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042534-exon-sc0003479-1575043694:11300..11470 | TCONS_00042534-exon-sc0003479-1575043694:11300..11470 | Clytia hemisphaerica | exon |
| TCONS_00042534-exon-sc0003479-1575043694:10426..10615 | TCONS_00042534-exon-sc0003479-1575043694:10426..10615 | Clytia hemisphaerica | exon |
| TCONS_00042534-exon-sc0003479-1575043694:9615..9880 | TCONS_00042534-exon-sc0003479-1575043694:9615..9880 | Clytia hemisphaerica | exon |
| TCONS_00042534-exon-sc0003479-1510915933:11300..11470 | TCONS_00042534-exon-sc0003479-1510915933:11300..11470 | Clytia hemisphaerica | exon |
| TCONS_00042534-exon-sc0003479-1510915933:10426..10615 | TCONS_00042534-exon-sc0003479-1510915933:10426..10615 | Clytia hemisphaerica | exon |
| TCONS_00042534-exon-sc0003479-1510915933:9615..9880 | TCONS_00042534-exon-sc0003479-1510915933:9615..9880 | Clytia hemisphaerica | exon |
| TCONS_00042534-exon-sc0003479-1491911889:11300..11470 | TCONS_00042534-exon-sc0003479-1491911889:11300..11470 | Clytia hemisphaerica | exon |
| TCONS_00042534-exon-sc0003479-1491911889:10426..10615 | TCONS_00042534-exon-sc0003479-1491911889:10426..10615 | Clytia hemisphaerica | exon |
| TCONS_00042534-exon-sc0003479-1491911889:9615..9880 | TCONS_00042534-exon-sc0003479-1491911889:9615..9880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003479 | supercontig | sc0003479:9615..11470 - |
Blast
The following BLAST results are available for this feature:
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