TCONS_00042673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042673
Unique NameTCONS_00042673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042673 ID=TCONS_00042673|Name=TCONS_00042673|organism=Clytia hemisphaerica|type=transcript|length=781bp
TTGCTTACGAACAGAAATAGAAGAACAACCGAGCCTGAAGAGAGGACGTT
CCGAAACCCCACCACCGGAGGAAAGCCAAGTAGGTATGGTAAGTACCGGG
TCGAGTGAGGTCCTAAGTCAACCTCTCTTCCCTGAGTTGTCCTAGGCTga
agaaaatgatttaaataacACATGAGATATTATTGATGAACCAGAAGGAG
AGGATATTGATCCACGTCGAATCATAGAAAATTATATTGAAGTCGTCAAA
GAAACACCTCCGTCTCCTCCTCAAGTAGAATCACAAACNCCAAGTAGGTA
TGGTAAGTACCGGGTCGAGTGAGGTCCTAAGTCAACCTCTCTTCCCTGAG
TTGTCCTAGGCTgaagaaaatgatttaaataacACATGAGATATTATTGA
TGAACCAGAAGGAGAGGATATTGATCCACGTCGAATCATAGAAAATTATA
TTGAAGTCGTCAAAGAAACACCTCCGTTTCCTCCTCAAGTAGAATCACAA
ATNTTGGGTTGTTTTGAGTTatagcaaagaataaaatgACGTCAGAAGCG
CGGGAAAATACGAAAATTCGCGCCGAATTCGCCACGTGCAGGGGTCTTGC
ATGAATTTCTCTCCCATAAAGAAGGTAATTTGACCATGGAATATGGTCCA
AGTTTAAAAGAAGACAAATCAGACCATGCCTATTTGCATTCATAAAGCAG
TTACATCTACTATTTACAGGTATgtacataaataaaaaatactttctatC
AATATCAAGAAATAAACATATAAACAATAAG
Run BLAST on NCBI

transcript from alignment at sc0003589:22..802

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042673 ID=TCONS_00042673|Name=TCONS_00042673|organism=Clytia hemisphaerica|type=transcript|length=781bp|location=Sequence derived from alignment at sc0003589:22..802 (Clytia hemisphaerica)
CTTATTGTTTATATGTTTATTTCTTGATATTGatagaaagtattttttat
ttatgtacATACCTGTAAATAGTAGATGTAACTGCTTTATGAATGCAAAT
AGGCATGGTCTGATTTGTCTTCTTTTAAACTTGGACCATATTCCATGGTC
AAATTACCTTCTTTATGGGAGAGAAATTCATGCAAGACCCCTGCACGTGG
CGAATTCGGCGCGAATTTTCGTATTTTCCCGCGCTTCTGACGTcatttta
ttctttgctatAACTCAAAACAACCCAANATTTGTGATTCTACTTGAGGA
GGAAACGGAGGTGTTTCTTTGACGACTTCAATATAATTTTCTATGATTCG
ACGTGGATCAATATCCTCTCCTTCTGGTTCATCAATAATATCTCATGTgt
tatttaaatcattttcttcAGCCTAGGACAACTCAGGGAAGAGAGGTTGA
CTTAGGACCTCACTCGACCCGGTACTTACCATACCTACTTGGNGTTTGTG
ATTCTACTTGAGGAGGAGACGGAGGTGTTTCTTTGACGACTTCAATATAA
TTTTCTATGATTCGACGTGGATCAATATCCTCTCCTTCTGGTTCATCAAT
AATATCTCATGTgttatttaaatcattttcttcAGCCTAGGACAACTCAG
GGAAGAGAGGTTGACTTAGGACCTCACTCGACCCGGTACTTACCATACCT
ACTTGGCTTTCCTCCGGTGGTGGGGTTTCGGAACGTCCTCTCTTCAGGCT
CGGTTGTTCTTCTATTTCTGTTCGTAAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026486XLOC_026486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042673-exon-sc0003589-1491911889:22..802TCONS_00042673-exon-sc0003589-1491911889:22..802Clytia hemisphaericaexon
TCONS_00042673-exon-sc0003589-1510915933:22..802TCONS_00042673-exon-sc0003589-1510915933:22..802Clytia hemisphaericaexon
TCONS_00042673-exon-sc0003589-1575043694:22..802TCONS_00042673-exon-sc0003589-1575043694:22..802Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003589supercontigsc0003589:22..802 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.062024	0.120966	0.0702268	0	0.195691	0.166186	0.318967	0.22396	0.104533	0.129481	0.0631904	0.0828178	0.124263	0.214194	0.106117	0.302366	0.139684	0.286342	0.197799	0	0.266897	0.175503	0.142231	0	0.932294	0.416025	0.213836	0.181529	0.275367	0.140278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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