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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042738 ID=TCONS_00042738|Name=TCONS_00042738|organism=Clytia hemisphaerica|type=transcript|length=1892bp
TTTACTATGTGGCGCTGTCTCACGGAACTGGATCTCCAATGCTTCTTGCA
CCTTcctatcaaatttattttcctcTCTTTTAAGGAGAGATACATCATCC
CATTTCAGTCCCTCTTTACATATCCTTGCATGATTCGTAATACCAGATAA
ACCCCACTTTTCGCCCTCAACGTTTTTCTTATGTTGATTCACTTGTGTGG
TTACTTTAAAGTCTGGTCTCTGGTGTTCTTTGATGGGAGCCGACTCTTGT
TTTTGGATGTTAACAAAGACTTTAGATTCGCACCACTTTTGAAAACAGTT
CTGTAGCCTGCGTTTCTAAATGATTTTCTCAATTTGGAGCTCAGTCCTGG
TATCCAAGGTAGCTTGACAATTTTTAATTGTTCTTGGTCATCGTCAGTTT
GTCTGTTAGGTCCGGCTTCTTGTGCTTGGAATTCTTTAGCAATTCTTTTC
AAAGTCGGACAATCATAACCATTTTCCGCAAAGTTATCAATCAGGAATTG
AATCTCTTCATCTCGAAACTGTTCGTCGCAGGTCTTGTGAGCGTGATTGA
GGATTTCTTGGCTGCAATGTATCAGGGCTTCTCAAAGATGGATTTTAGTA
ATGGCATTACTGTTTTAAGTTTTGTCAAATTAAAGATGACATTCACCGGT
GCACCAGATCTCTTAATTGAATCTCCAACAATATTGaacgtaaaatttct
tcacCTCTTGAGCTTCCTCTTTCACTTTCTTTGAGGTTGATTTATCACTT
AAAATCTTATAGTTAGCATTGTTTCAATATGATTCTCATAAAAGATAGGC
GGGTATTTCTAGCAATATCTTGCCTTAGCACACACTTACCTAAGACAATG
GGGAATTCAATGCTCTGTTTACCTTCGagctccaaaaaaaaattattgat
gcAGTAAAATTTCATTATAGACCTTGCTTGTCATGTTGAATagttaaaaa
ctccagcatcaaaacaaagatgaaaagaaattaATGCACACTCATAATAA
TTATACATTAATGTCACTATTTTAATGCAATGTTTtgataggctacgtca
tatttTTCATTGTTACGAAcataaaactcctactcttcaggatatgcgca
ctgctcttgttttgaatattgaatttatccggatacatcgcatgcatact
gaggttttaatgaaacaatagaagTAAACTAAAATCTGCAAGTGGGGTTT
CATCCCTGCTCGAAACAGCAAATGAAATTTCATCTTTAAGACATGAAGAC
CATGAAAAAGCAGGAATGTAGTGTCTGTAGTGTCTTCACAAAAGAATCCG
AAGGAGAACTACCGGAATTCCAGTCCCACACAGATCGCTTCATCAAAAGA
ATACCAATAACAAAAGATCTTGTTTCCGAATCTCTACTAAAACTAGATTA
CAACAAATTGTTTGGTCCAAATGAAATGcatccaaaaatgttaaaagaac
TTGTAGATTATATCGCAGAATCACTTGCACTTTTAATACCGGAAGAATGG
AAATTAGAATGTAACTCCAATTTATAAGAGCAAAGGAGCACAAAATTTGG
CTGTCAACTACCTGTAAGTTTGACTATTTTCGATCGTTTGTACTGTAAGC
TGATGGAAACAATTTTACGAGCGCACATTACAAAACATCTTGACGACCTG
GAACTCCTTTCAGATAAACAATATGGTTTCATTAGCAATTACCTATTTCG
ATTTTGCTGAGGCATTTGATACCGTGCCACACCGTcaattgtgcaaaaaa
ctaatgggATATAGACCCAAATAACCTACTCTTGATTGGATAAAAGCATT
CTTTAACGGATGTAAACAATAGTTAATTTAGGGGTAGGGGGTAAAAGTCG
GTATCTTCAGATCCtcttcgcctggtgttttttctgttccat Run BLAST on NCBI transcript from alignment at sc0003639:1625..3516 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042738 ID=TCONS_00042738|Name=TCONS_00042738|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at sc0003639:1625..3516 (Clytia hemisphaerica)
atggaacagaaaaaacaccaggcgaagaGGATCTGAAGATACCGACTTTT
ACCCCCTACCCCTAAATTAACTATTGTTTACATCCGTTAAAGAATGCTTT
TATCCAATCAAGAGTAGGTTATTTGGGTCTATATcccattagttttttgc
acaattgACGGTGTGGCACGGTATCAAATGCCTCAGCAAAATCGAAATAG
GTAATTGCTAATGAAACCATATTGTTTATCTGAAAGGAGTTCCAGGTCGT
CAAGATGTTTTGTAATGTGCGCTCGTAAAATTGTTTCCATCAGCTTACAG
TACAAACGATCGAAAATAGTCAAACTTACAGGTAGTTGACAGCCAAATTT
TGTGCTCCTTTGCTCTTATAAATTGGAGTTACATTCTAATTTCCATTCTT
CCGGTATTAAAAGTGCAAGTGATTCTGCGATATAATCTACAAgttctttt
aacatttttggatgCATTTCATTTGGACCAAACAATTTGTTGTAATCTAG
TTTTAGTAGAGATTCGGAAACAAGATCTTTTGTTATTGGTATTCTTTTGA
TGAAGCGATCTGTGTGGGACTGGAATTCCGGTAGTTCTCCTTCGGATTCT
TTTGTGAAGACACTACAGACACTACATTCCTGCTTTTTCATGGTCTTCAT
GTCTTAAAGATGAAATTTCATTTGCTGTTTCGAGCAGGGATGAAACCCCA
CTTGCAGATTTTAGTTTActtctattgtttcattaaaacctcagtatgca
tgcgatgtatccggataaattcaatattcaaaacaagagcagtgcgcata
tcctgaagagtaggagttttatgTTCGTAACAATGAAaaatatgacgtag
cctatcaAAACATTGCATTAAAATAGTGACATTAATGTATAATTATTATG
AGTGTGCATtaatttcttttcatctttgttttgatgctggagtttttaac
tATTCAACATGACAAGCAAGGTCTATAATGAAATTTTACTgcatcaataa
tttttttttggagctCGAAGGTAAACAGAGCATTGAATTCCCCATTGTCT
TAGGTAAGTGTGTGCTAAGGCAAGATATTGCTAGAAATACCCGCCTATCT
TTTATGAGAATCATATTGAAACAATGCTAACTATAAGATTTTAAGTGATA
AATCAACCTCAAAGAAAGTGAAAGAGGAAGCTCAAGAGgtgaagaaattt
tacgttCAATATTGTTGGAGATTCAATTAAGAGATCTGGTGCACCGGTGA
ATGTCATCTTTAATTTGACAAAACTTAAAACAGTAATGCCATTACTAAAA
TCCATCTTTGAGAAGCCCTGATACATTGCAGCCAAGAAATCCTCAATCAC
GCTCACAAGACCTGCGACGAACAGTTTCGAGATGAAGAGATTCAATTCCT
GATTGATAACTTTGCGGAAAATGGTTATGATTGTCCGACTTTGAAAAGAA
TTGCTAAAGAATTCCAAGCACAAGAAGCCGGACCTAACAGACAAACTGAC
GATGACCAAGAACAATTAAAAATTGTCAAGCTACCTTGGATACCAGGACT
GAGCTCCAAATTGAGAAAATCATTTAGAAACGCAGGCTACAGAACTGTTT
TCAAAAGTGGTGCGAATCTAAAGTCTTTGTTAACATCCAAAAACAAGAGT
CGGCTCCCATCAAAGAACACCAGAGACCAGACTTTAAAGTAACCACACAA
GTGAATCAACATAAGAAAAACGTTGAGGGCGAAAAGTGGGGTTTATCTGG
TATTACGAATCATGCAAGGATATGTAAAGAGGGACTGAAATGGGATGATG
TATCTCTCCTTAAAAGAgaggaaaataaatttgataggAAGGTGCAAGAA
GCATTGGAGATCCAGTTCCGTGAGACAGCGCCACATAGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042738-exon-sc0003639-1491911889:1625..3516 | TCONS_00042738-exon-sc0003639-1491911889:1625..3516 | Clytia hemisphaerica | exon |
| TCONS_00042738-exon-sc0003639-1510915933:1625..3516 | TCONS_00042738-exon-sc0003639-1510915933:1625..3516 | Clytia hemisphaerica | exon |
| TCONS_00042738-exon-sc0003639-1575043694:1625..3516 | TCONS_00042738-exon-sc0003639-1575043694:1625..3516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003639 | supercontig | sc0003639:1625..3516 . |
Blast
The following BLAST results are available for this feature:
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