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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042816 ID=TCONS_00042816|Name=TCONS_00042816|organism=Clytia hemisphaerica|type=transcript|length=1784bp
tagataaacatgcgttttttgagccaacaaatttttttgcaaaaatctgc
tttagcCATCTtctacctatgatggtaccctactttcatgcaaaaaatca
gaaaaaattaatgatccaatttttcacaaaggcATAAATTGTTATTTTAA
GCAAACGCAACGCCATTGAAATTATTCTATAAACTCCCAACCTCGGATTA
GGGAACATATTTGAAGTTTccataaaaaaaaatgaatacataaaaaaaga
aatgtggtagttacaaaaatatcatcaaaaatGAAGATACATTGGTATAT
CGTTATATCAGTATCGGTAAGACGTTATGTATCTTCCGAGTAAATCGTTC
TCAGTCGATGCAACGTTTCATTCAATCTCTTACAGTAGATAGGCGTCGTG
TTGACGTGAGGTAGCAGCAACGTACTTGAGTACCCGCGTTATAAACAATC
CGTAGTTCATTATAAAATTGTATTTGGAACTATGATCGGAAGCAACTCGT
TAAGTGAGGTCGTAAAGAGATTCCATTTCAGTTTCACAAGGCAACCTTTC
ATAAACATCTAAAAGAGTCAATCATTTCAATGagcattttgaagaaaaaa
ggatGTAAATAATCTTCTTCCCAGATCTGTATTTTCTCATTTTCGAGAAG
AGGAGACTCGGTAATGGTGTTGTTAAAGATGACATGGATCGTGGTTTCTT
CTTCTTCGAtgggaaaaaaagttttataatcTGTTGTGTGATCATACACG
AGGATGTGGATATCAATATCTGTTTTTTCTGCATTCTCTCTGTACCAATC
TTTGATTTGTTGGTCTGTTTGGTTACTCTGTATGGTATGATTTTGATGCA
CTGCTGAGTATGTGACTTTATCAAATGTAGACCAGTATGCCGGTTTTTGA
ATCAGATGAAGGGTTGTATTTGGTAAAAGTCCTGTAATGTATTCCTCtat
aaaaaggtaaaaaattccAATTACTGGTGATATTGGCAAACGATGCCAAA
AATAAACGTGTATATTTTTGGTAATTTCACAGGTGCTTCTATGTCGTTTA
TATCTCTCACGCCAATCATAGTTTGGGTTGTGCATCAGGTCTACAAAGAT
TTGATGTAAGTGTGGATTGAATTTGTGATGAACAGGATCAGATCGTATGC
TATGTCTTGTGTTCGGAAGACAAAATAACGTGGAGGAACACCACATCACA
ATGTCACTATATTTACTTTcgtaaatatttttaacttcaTCAACAACTGA
TCGTTCACTGTCTGTAGCATTATAAAAGGAATAAAATGACAGAAAAAACA
AAGTCTGATTGATGCCACCATTGCTTCGTGGTATATTCGACAAAACTCTT
ACAACATCGTTGCTATCTGTTTTGTCAATTGCTTGGAATTCGGTTTGGAA
AAAGTTTATATAATTTTCTTCGCTCATACGTATTACTCGACTTTGTATTG
GAGAAAATACCCAGACTGTGAAACAGGGCGTGTCCAATAAATATTGAACC
AAGTACATTACTTGACTCGAAATTCCTTGGTAAAGCTTAtccaaaaatgt
tctaaaatatTCAGGAAAATTCATACACGGAATGATGGTAACATTCCTCT
CTGAGAAACATGGTAGCAACGTGTAAGCGCTCCCAGCGTGCGATGAAATA
ACCATAcaaaaaaacaagattttgaaTGACGCTTGTAGAAAGCTCATGTT
GTGAACTGATGTTGCGCCTTATCGAAAGTAAATGCAAATCGTTACTTACT
TTGTTtaattgtaaaaaaagaaaagcagTTTATA Run BLAST on NCBI protein sequence of TCONS_00042816-protein >TCONS_00042816-protein ID=TCONS_00042816-protein|Name=TCONS_00042816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MSFLQASFKILFFCMVISSHAGSAYTLLPCFSERNVTIIPCMNFPEYFRT
FLDKLYQGISSQVMYLVQYLLDTPCFTVWVFSPIQSRVIRMSEENYINFF
QTEFQAIDKTDSNDVVRVLSNIPRSNGGINQTLFFLSFYSFYNATDSERS
VVDEVKNIYESKYSDIVMWCSSTLFCLPNTRHSIRSDPVHHKFNPHLHQI
FVDLMHNPNYDWRERYKRHRSTCEITKNIHVYFWHRLPISPVIGIFYLFI
EEYITGLLPNTTLHLIQKPAYWSTFDKVTYSAVHQNHTIQSNQTDQQIKD
WYRENAEKTDIDIHILVYDHTTDYKTFFPIEEEETTIHVIFNNTITESPL
LENEKIQIWEEDYLHPFFFKMLIEMIDSFRCL Run BLAST on NCBI transcript from alignment at sc0003703:3795..5578 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042816 ID=TCONS_00042816|Name=TCONS_00042816|organism=Clytia hemisphaerica|type=transcript|length=1784bp|location=Sequence derived from alignment at sc0003703:3795..5578 (Clytia hemisphaerica)
TATAAActgcttttctttttttacaattaAACAAAGTAAGTAACGATTTG
CATTTACTTTCGATAAGGCGCAACATCAGTTCACAACATGAGCTTTCTAC
AAGCGTCAttcaaaatcttgtttttttgTATGGTTATTTCATCGCACGCT
GGGAGCGCTTACACGTTGCTACCATGTTTCTCAGAGAGGAATGTTACCAT
CATTCCGTGTATGAATTTTCCTGAatattttagaacatttttggaTAAGC
TTTACCAAGGAATTTCGAGTCAAGTAATGTACTTGGTTCAATATTTATTG
GACACGCCCTGTTTCACAGTCTGGGTATTTTCTCCAATACAAAGTCGAGT
AATACGTATGAGCGAAGAAAATTATATAAACTTTTTCCAAACCGAATTCC
AAGCAATTGACAAAACAGATAGCAACGATGTTGTAAGAGTTTTGTCGAAT
ATACCACGAAGCAATGGTGGCATCAATCAGACTTTGTTTTTTCTGTCATT
TTATTCCTTTTATAATGCTACAGACAGTGAACGATCAGTTGTTGAtgaag
ttaaaaatatttacgAAAGTAAATATAGTGACATTGTGATGTGGTGTTCC
TCCACGTTATTTTGTCTTCCGAACACAAGACATAGCATACGATCTGATCC
TGTTCATCACAAATTCAATCCACACTTACATCAAATCTTTGTAGACCTGA
TGCACAACCCAAACTATGATTGGCGTGAGAGATATAAACGACATAGAAGC
ACCTGTGAAATTACCAAAAATATACACGTTTATTTTTGGCATCGTTTGCC
AATATCACCAGTAATTggaattttttacctttttataGAGGAATACATTA
CAGGACTTTTACCAAATACAACCCTTCATCTGATTCAAAAACCGGCATAC
TGGTCTACATTTGATAAAGTCACATACTCAGCAGTGCATCAAAATCATAC
CATACAGAGTAACCAAACAGACCAACAAATCAAAGATTGGTACAGAGAGA
ATGCAGAAAAAACAGATATTGATATCCACATCCTCGTGTATGATCACACA
ACAgattataaaactttttttcccaTCGAAGAAGAAGAAACCACGATCCA
TGTCATCTTTAACAACACCATTACCGAGTCTCCTCTTCTCGAAAATGAGA
AAATACAGATCTGGGAAGAAGATTATTTACatccttttttcttcaaaatg
ctCATTGAAATGATTGACTCTTTTAGATGTTTATGAAAGGTTGCCTTGTG
AAACTGAAATGGAATCTCTTTACGACCTCACTTAACGAGTTGCTTCCGAT
CATAGTTCCAAATACAATTTTATAATGAACTACGGATTGTTTATAACGCG
GGTACTCAAGTACGTTGCTGCTACCTCACGTCAACACGACGCCTATCTAC
TGTAAGAGATTGAATGAAACGTTGCATCGACTGAGAACGATTTACTCGGA
AGATACATAACGTCTTACCGATACTGATATAACGATATACCAATGTATCT
TCatttttgatgatatttttgtaactaccacatttctttttttatgtatt
catttttttttatggAAACTTCAAATATGTTCCCTAATCCGAGGTTGGGA
GTTTATAGAATAATTTCAATGGCGTTGCGTTTGCTTAAAATAACAATTTA
Tgcctttgtgaaaaattggatcattaattttttctgattttttgcatgaa
agtagggtaccatcataggtagaAGATGgctaaagcagatttttgcaaaa
aaatttgttggctcaaaaaacgcatgtttatcta Coding sequence (CDS) from alignment at sc0003703:3795..5578 >TCONS_00042816 ID=TCONS_00042816|Name=TCONS_00042816|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at sc0003703:3795..5578 (Clytia hemisphaerica)
ATGAGCTTTCTACAAGCGTCAttcaaaatcttgtttttttgTATGGTTAT
TTCATCGCACGCTGGGAGCGCTTACACGTTGCTACCATGTTTCTCAGAGA
GGAATGTTACCATCATTCCGTGTATGAATTTTCCTGAatattttagaaca
tttttggaTAAGCTTTACCAAGGAATTTCGAGTCAAGTAATGTACTTGGT
TCAATATTTATTGGACACGCCCTGTTTCACAGTCTGGGTATTTTCTCCAA
TACAAAGTCGAGTAATACGTATGAGCGAAGAAAATTATATAAACTTTTTC
CAAACCGAATTCCAAGCAATTGACAAAACAGATAGCAACGATGTTGTAAG
AGTTTTGTCGAATATACCACGAAGCAATGGTGGCATCAATCAGACTTTGT
TTTTTCTGTCATTTTATTCCTTTTATAATGCTACAGACAGTGAACGATCA
GTTGTTGAtgaagttaaaaatatttacgAAAGTAAATATAGTGACATTGT
GATGTGGTGTTCCTCCACGTTATTTTGTCTTCCGAACACAAGACATAGCA
TACGATCTGATCCTGTTCATCACAAATTCAATCCACACTTACATCAAATC
TTTGTAGACCTGATGCACAACCCAAACTATGATTGGCGTGAGAGATATAA
ACGACATAGAAGCACCTGTGAAATTACCAAAAATATACACGTTTATTTTT
GGCATCGTTTGCCAATATCACCAGTAATTggaattttttacctttttata
GAGGAATACATTACAGGACTTTTACCAAATACAACCCTTCATCTGATTCA
AAAACCGGCATACTGGTCTACATTTGATAAAGTCACATACTCAGCAGTGC
ATCAAAATCATACCATACAGAGTAACCAAACAGACCAACAAATCAAAGAT
TGGTACAGAGAGAATGCAGAAAAAACAGATATTGATATCCACATCCTCGT
GTATGATCACACAACAgattataaaactttttttcccaTCGAAGAAGAAG
AAACCACGATCCATGTCATCTTTAACAACACCATTACCGAGTCTCCTCTT
CTCGAAAATGAGAAAATACAGATCTGGGAAGAAGATTATTTACatccttt
tttcttcaaaatgctCATTGAAATGATTGACTCTTTTAGATGTTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042816-exon-sc0003703-1491911889:3795..5578 | TCONS_00042816-exon-sc0003703-1491911889:3795..5578 | Clytia hemisphaerica | exon |
| TCONS_00042816-exon-sc0003703-1510915933:3795..5578 | TCONS_00042816-exon-sc0003703-1510915933:3795..5578 | Clytia hemisphaerica | exon |
| TCONS_00042816-exon-sc0003703-1575043694:3795..5578 | TCONS_00042816-exon-sc0003703-1575043694:3795..5578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003703 | supercontig | sc0003703:3795..5578 . |
Blast
The following BLAST results are available for this feature:
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