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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042817 ID=TCONS_00042817|Name=TCONS_00042817|organism=Clytia hemisphaerica|type=transcript|length=1346bp
TAGAAAAGTCTCATCAATCTTGAGCATATATCCATACTTGGGCTTGCCAG
GGTCAACAACAATATGTTTTATGAATTCATGAGGGTCAGTATTGATTGAA
GACTTTATCATACTAGTGGACCCTTGTAATAATCGATAGGCAGTGCTGGT
AGATGGGAATTTGAGTGCCTTGTGCACAATATCCAAAAGGGAGGGGCCAC
CATATTGAAGGATAAGGAAAGCAAGATCTTTATCATCTTCTGATGAGTGC
GGGTTATAAACACCGTCAATAGCATCAATGATTTTATTTATGGTGTATTG
TAACCCTCTACGGCGATTCATTGCAACCTTAAAAATGGAAAACAAAAATT
GATTTAAATTCAACCACAATAACTGCAATCACGATAAATTCTTAATAATT
CCTAGCCATTCATTTTAAGCTTGTATTTCCGTTCATTAGATTTTTGAAAC
CCACTCACCGACTGATTGTTTATTTTTACAAAAACCTTGAAATATCATTC
AATTAAGAAAGAGATACCTTGACAATTTCATGCAACTTTGGAATTGAATT
GTCTTTTACCAATAACATAAACCGCTTATGCAACTCCAATGACTTATTCA
AAGTATTCAATTTTCTTGTTGCTGATACAAACTTCAATTTGTAATTGTTC
AAGGAATTTCCCATCTTCACTACTCGCTTACACAATTGTTCATGAGTTAA
ATATATGGATTTAGCTGTGGTGGTATGTTTGTCCATGTCATTCGAGCTTG
TCACCCAAGATTGAAATACATTGTGATTTTTCAAATCCAAGCATTCTTTG
TTTGTTCTGACGTCGAATGGATAGGATATGTGAAGAATATAGTTTTTTCC
TACGCATTCCTTGGCATGAAAAGCACCATTCTCAAAGACAATGTCATTTA
AAGTGGTGCTTAGCAACTGAAAAGGGAAATTTGAGTAAATCTCACCAGCT
AAAGCAGGAACATAACCAAAACATTTCTTTATAGAAGCATTAGTTGAGAC
AGATACTGCATTTATATTTATAGCATCCGGTATATTTGGACTCCCTCCAA
TAGGCTGAACATTCTGATCCATTTCATAGTCTTGTAACACAGTATCATTA
TCATTGTTAGTATTTTCAGAGGTTAGATCAATATCATTATCAGAAAAATT
GTCAATCGAATTAGATTCTTCTGAAGGAAATTTTTCTGCAGATCCAGATG
AATTCTTTTGGAGAAAGAAAGATTTGATAGACTTTGTTCTTATATTATTA
AGTGGTTTCGATTTGTTTGTTCGTTTTTCCCCTTTCCTTTGCAAGACTCA
ACATGACGCTCAAAATTAGTTCTGTTATGACCAGCTccatgaaaag Run BLAST on NCBI protein sequence of TCONS_00042817-protein >TCONS_00042817-protein ID=TCONS_00042817-protein|Name=TCONS_00042817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MDQNVQPIGGSPNIPDAININAVSVSTNASIKKCFGYVPALAGEIYSNFP
FQLLSTTLNDIVFENGAFHAKECVGKNYILHISYPFDVRTNKECLDLKNH
NVFQSWVTSSNDMDKHTTTAKSIYLTHEQLCKRVVKMGNSLNNYKLKFVS
ATRKLNTLNKSLELHKRFMLLVKDNSIPKLHEIVKVSLS Run BLAST on NCBI transcript from alignment at sc0003704:6605..7950 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042817 ID=TCONS_00042817|Name=TCONS_00042817|organism=Clytia hemisphaerica|type=transcript|length=1346bp|location=Sequence derived from alignment at sc0003704:6605..7950 (Clytia hemisphaerica)
cttttcatggAGCTGGTCATAACAGAACTAATTTTGAGCGTCATGTTGAG
TCTTGCAAAGGAAAGGGGAAAAACGAACAAACAAATCGAAACCACTTAAT
AATATAAGAACAAAGTCTATCAAATCTTTCTTTCTCCAAAAGAATTCATC
TGGATCTGCAGAAAAATTTCCTTCAGAAGAATCTAATTCGATTGACAATT
TTTCTGATAATGATATTGATCTAACCTCTGAAAATACTAACAATGATAAT
GATACTGTGTTACAAGACTATGAAATGGATCAGAATGTTCAGCCTATTGG
AGGGAGTCCAAATATACCGGATGCTATAAATATAAATGCAGTATCTGTCT
CAACTAATGCTTCTATAAAGAAATGTTTTGGTTATGTTCCTGCTTTAGCT
GGTGAGATTTACTCAAATTTCCCTTTTCAGTTGCTAAGCACCACTTTAAA
TGACATTGTCTTTGAGAATGGTGCTTTTCATGCCAAGGAATGCGTAGGAA
AAAACTATATTCTTCACATATCCTATCCATTCGACGTCAGAACAAACAAA
GAATGCTTGGATTTGAAAAATCACAATGTATTTCAATCTTGGGTGACAAG
CTCGAATGACATGGACAAACATACCACCACAGCTAAATCCATATATTTAA
CTCATGAACAATTGTGTAAGCGAGTAGTGAAGATGGGAAATTCCTTGAAC
AATTACAAATTGAAGTTTGTATCAGCAACAAGAAAATTGAATACTTTGAA
TAAGTCATTGGAGTTGCATAAGCGGTTTATGTTATTGGTAAAAGACAATT
CAATTCCAAAGTTGCATGAAATTGTCAAGGTATCTCTTTCTTAATTGAAT
GATATTTCAAGGTTTTTGTAAAAATAAACAATCAGTCGGTGAGTGGGTTT
CAAAAATCTAATGAACGGAAATACAAGCTTAAAATGAATGGCTAGGAATT
ATTAAGAATTTATCGTGATTGCAGTTATTGTGGTTGAATTTAAATCAATT
TTTGTTTTCCATTTTTAAGGTTGCAATGAATCGCCGTAGAGGGTTACAAT
ACACCATAAATAAAATCATTGATGCTATTGACGGTGTTTATAACCCGCAC
TCATCAGAAGATGATAAAGATCTTGCTTTCCTTATCCTTCAATATGGTGG
CCCCTCCCTTTTGGATATTGTGCACAAGGCACTCAAATTCCCATCTACCA
GCACTGCCTATCGATTATTACAAGGGTCCACTAGTATGATAAAGTCTTCA
ATCAATACTGACCCTCATGAATTCATAAAACATATTGTTGTTGACCCTGG
CAAGCCCAAGTATGGATATATGCTCAAGATTGATGAGACTTTTCTA Coding sequence (CDS) from alignment at sc0003704:6605..7950 >TCONS_00042817 ID=TCONS_00042817|Name=TCONS_00042817|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at sc0003704:6605..7950 (Clytia hemisphaerica)
ATGGATCAGAATGTTCAGCCTATTGGAGGGAGTCCAAATATACCGGATGC
TATAAATATAAATGCAGTATCTGTCTCAACTAATGCTTCTATAAAGAAAT
GTTTTGGTTATGTTCCTGCTTTAGCTGGTGAGATTTACTCAAATTTCCCT
TTTCAGTTGCTAAGCACCACTTTAAATGACATTGTCTTTGAGAATGGTGC
TTTTCATGCCAAGGAATGCGTAGGAAAAAACTATATTCTTCACATATCCT
ATCCATTCGACGTCAGAACAAACAAAGAATGCTTGGATTTGAAAAATCAC
AATGTATTTCAATCTTGGGTGACAAGCTCGAATGACATGGACAAACATAC
CACCACAGCTAAATCCATATATTTAACTCATGAACAATTGTGTAAGCGAG
TAGTGAAGATGGGAAATTCCTTGAACAATTACAAATTGAAGTTTGTATCA
GCAACAAGAAAATTGAATACTTTGAATAAGTCATTGGAGTTGCATAAGCG
GTTTATGTTATTGGTAAAAGACAATTCAATTCCAAAGTTGCATGAAATTG
TCAAGGTATCTCTTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042817-exon-sc0003704-1491911889:6605..7950 | TCONS_00042817-exon-sc0003704-1491911889:6605..7950 | Clytia hemisphaerica | exon |
| TCONS_00042817-exon-sc0003704-1510915933:6605..7950 | TCONS_00042817-exon-sc0003704-1510915933:6605..7950 | Clytia hemisphaerica | exon |
| TCONS_00042817-exon-sc0003704-1575043694:6605..7950 | TCONS_00042817-exon-sc0003704-1575043694:6605..7950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003704 | supercontig | sc0003704:6605..7950 . |
Blast
The following BLAST results are available for this feature:
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