TCONS_00042878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042878
Unique NameTCONS_00042878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042878 ID=TCONS_00042878|Name=TCONS_00042878|organism=Clytia hemisphaerica|type=transcript|length=389bp
ttgctcCGCCATTAAATAAcgagtcttttttttttccacACAGGTTTCGG
ATCTACCGTCTTAATTAAAATATCGTACCCCGTACAAGTCGTTAATTGTT
GGTTCAGCCAAATTTCCTAAAAAAGGtaagaaaactttaaattttcgtCA
AAAGTAAATCACGCTTTGGTTGGGCACGAAGTGAACAGTGAATTTGAAAA
GGTATAGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAG
TGAACAGTCTTTTGAAAAGGgtttgGGCACGAAGTGAAcagtgaattttg
aaaaattttgctcCGCCATTAAATAACGAttttttttttcacacagGTTT
CGGATCTACCGTCTTAATTAAAATATCGTACCCCGTACA
Run BLAST on NCBI

transcript from alignment at sc0003755:34..1360+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042878 ID=TCONS_00042878|Name=TCONS_00042878|organism=Clytia hemisphaerica|type=transcript|length=1327bp|location=Sequence derived from alignment at sc0003755:34..1360+ (Clytia hemisphaerica)
ttgctcCGCCATTAAATAAcgagtcttttttttttccacACAGGTTTCGG
ATCTACCGTCTTAATTAAAATATCGTACCCCGTACAAGTCGTTAATTGTT
GGTTCAGCCAAATTTCCTAAAAAAGGtaagaaaactttaaattttcgtCA
AAAGTAAATCACGCTTTGGTTGGGCACGAAGTGAACAGTGAATTTGAAAA
GGTATAGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAG
TGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGAACAGTCTTTTGAA
AAGGGTTCGGGCACGAAGTGAACAgtcttttgaaaaagatttgggCACGA
AGTGAACAGTGAATTTTGAAAAGGGTTCGGGCACGAAGTGAACAGTGAAT
TTTAAAAAGGGTTTGGGTACGAAGTGAAcagtgaattttgaaaaattttg
ctgcGCCATTAAATAACGAGTCTTTTTTTTCACACAGGTTTCGGATCTAC
CGTCTTAATAAAAATATCGTACCCCGTACAAGTCGTTAACTGTTGGTTCa
gccaaattttctaaaaaaggtaagaaaactttaaattttcgcAAAAAGTA
AATCACCCCTCTTTGGTTGGGCACGAAGTGAACAGTGATTTTGAAAAGGT
ATAGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAATGA
ACAgtgttttgaaaaaggtttgGGCACGAAGTGAAcagtgaattttgaaa
aattttgctcCGCCATTAAATAACGAGTCTTTCTTTTTCCACACAGGTTT
CGGATCTACCGTCTTAATTANAAATTTTGGTCCGCCATTAAATaacgagt
tttttttttcacacaggTTTCGGATCTATCGTCTTAATTGAAATATCGTA
CCCCGTACAAGTCGTTTATTGTTGGTTCaaccaaattttctaaaaaaggt
aggaaaactttaaattttcgcAAAAAGTAAATCAGGGCACGAAGTGAACA
GTCTTTTTTAAAGGGTTCGGGCACGAAGTGAAcggtgaattttgaaaaat
tttggtccGCCATTAAATaacgagttttttttttcacacaggTTTCGGAT
CTATCGTCTTAATTGAAATATCGTACCCCGTACAAGTCGTTTATTGTTGG
TTcaatcaaattttctaaaaaaggtaggaaaactttaaattttcgcAAAA
AGTAAATCAGGGCACGAAGTGAAcagtgaattttgaaaaattttgctcCG
CCATTAAATAACGAGTCTTTTTTTTTCCACACAGGTTTCGGATCTACCGT
CTTAATTAAAATATCGTACCCCGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026659XLOC_026659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042878-exon-sc0003755-1491911889:34..303TCONS_00042878-exon-sc0003755-1491911889:34..303Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1510915933:34..303TCONS_00042878-exon-sc0003755-1510915933:34..303Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1575043694:34..303TCONS_00042878-exon-sc0003755-1575043694:34..303Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1491911889:751..809TCONS_00042878-exon-sc0003755-1491911889:751..809Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1510915933:751..809TCONS_00042878-exon-sc0003755-1510915933:751..809Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1575043694:751..809TCONS_00042878-exon-sc0003755-1575043694:751..809Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1491911889:883..899TCONS_00042878-exon-sc0003755-1491911889:883..899Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1510915933:883..899TCONS_00042878-exon-sc0003755-1510915933:883..899Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1575043694:883..899TCONS_00042878-exon-sc0003755-1575043694:883..899Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1491911889:1318..1360TCONS_00042878-exon-sc0003755-1491911889:1318..1360Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1510915933:1318..1360TCONS_00042878-exon-sc0003755-1510915933:1318..1360Clytia hemisphaericaexon
TCONS_00042878-exon-sc0003755-1575043694:1318..1360TCONS_00042878-exon-sc0003755-1575043694:1318..1360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003755supercontigsc0003755:34..1360 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457607	0.437779	0	0	0	0	0.367288	0.433377	0	0	0	0	0	0	0	0	0	1.01882	0	0	1.23908	0	0.31164	0	8.24979	4.5448	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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