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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043025 ID=TCONS_00043025|Name=TCONS_00043025|organism=Clytia hemisphaerica|type=transcript|length=174bp
caacaatctgtgacgtgatggGGGGAGTACAATTTATTGATTGGATTggt
aactttgATATGTTAAAAAGTTTCCACTTGAAACAGCTATAGATAGAATG
TGGCTCTCTACTTTCAAAGAAATATTCATGCTTTCACTGTTTGCATTAGT
CAAAGCACAAAATCACTGCTCCAC Run BLAST on NCBI transcript from alignment at sc0003863:3441..6952+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043025 ID=TCONS_00043025|Name=TCONS_00043025|organism=Clytia hemisphaerica|type=transcript|length=3512bp|location=Sequence derived from alignment at sc0003863:3441..6952+ (Clytia hemisphaerica)
caacaatctgtgacgtgatggGGGGAGTACAATTTATTGATTGGATTggt
aactttggtatgtatttttttatgtttaagattttttattttgaagacca
gcATGCAGCTATGCCGAAATAacaagacgcatgtcgatattggACAATTC
TACGGTACTGTAAAATctaaatagaaattgaattgtgtATTTTAAAATAC
GCAGTTCCTTtataactcaaatcaaattactttggaggttcggtgaaatg
gtggccgaattgccgtcccatgttttatcAGATAGTCCCTTTTAGTCATC
TTTTGACTGCATTTTAAATTCTCTGTGCTCTAAAGAAGGCCAATGTTTGA
TGCCCTTTGATACCCTGTCAAGATCAACTATCTCAAAACAGGGGTTGGGT
TAGGAGACTCTATTTTGTGGTAAGGCAGACATCCATAATTCAAACCTTCC
AGATGAAACATCAGTCATCTATATAACAAGATGTGTTTGTGaaaacaagg
atgagagttacttGAATCAAGCTCAAGAtctcaagaaaaataaataaaaa
ttgaaaacttgagACAATTGAAATGACTGATTGCTAACATGCAAGAGCAA
GCttatcaaccaatcaaaatgtgTTATTCAATTCCTGAGATATAGAGCTT
CGATTTGTTGGGCCTTGATTATGGGCTGCAGAGTGAAGATAATTCTGCAC
ATCTGCACAAAAGATCCCTTAACAATTAAGTGCTTTTTCTAAGTAATTGG
TTCATTCAGGTCAATTACATAGGTTTTTGGGTTTCTAGCATCCCTTCAGC
TAGTTCAAAATGCAGCTCACACGTCGCAGGTCAGCCCTggcaattcaatt
tttttggccTCGGCATTTTTTTGCCGAAGCAAATGGCTAAATTTGCTGTT
TGCCTTGGCAGAATaggcatttttcatttttcatttttcatttttcattt
ttcatttttcatttttcccaatttaaaatttaaaattgtgtTAAAAAAAA
CAGACAGCTGGAGATCTATAATTGTTTTTGTAGTTCTTCGATTGTTTCGA
CAGTTATCATTTTTagtaaaagtcttttgaaaaatttggcattttttttg
CCGACGCAAACAGACTATAAACCAATTTACGCCAGGACTGCAGGTTGCAG
GTCAATTCATAGACTTTGGTCACAGGTCACACAAACCACAGACTTGAAGA
TTGTAACCCGTTTGTGACATATGATCACAACATGCTTCTgtaaatattat
atgtaatggaaatgcTTCAGAATGATTTTTAatattattaatttcgccta
gcgaaagtattacggtCAGCTTCTACTGAAAGCGAAAGTAGAGTATCGGT
AGTATTAGTTTGTGTAACCACGgatgcttccgtataaaagattacatcat
gaatatcattaaaTGAATTGCGAGcatattttagtttattttcttataag
catatagatatactttataagaatcaaatcaataactcttgatagatggt
gatatacctttcggtaattagttcttacagagtaaacaagggacggcgca
caatatgggcatatttatttttcttataagcatctactttataagaatca
aatcaatctcATGATAGAgagtgatatacctttcggtaattagttcttac
aaagtaaacaaaggaaggtgaacaatatgagcatatttatttttcttata
agcatttactttataggaatcaaatcaataactcttgatagacggtggta
tacctttcggtaattagttcttacaaagtaaacaagggatggcgtatagt
atgagcatatttacttttcttataagcatttattttatataagaatcaaa
tcaataactcttgatcaACAGTGATACACCTTTCGGtatttagttcttac
aaagtaaacaagggacggcgcacaatatgagcatatttattttttataaa
catatactttgtaagagttcttaaaaattaaacagcaaTTGTTCTTTAAA
TTGGTCTAATTGTTTTAGTGATTTTAAGtctcgttgttcttgtaaaattg
ttacatcaaggctcgatgtaaagtagatttcagattaccTTCAATCTCTA
ATTCTTCTTTTTCACatgcagttcaaattctaggcaAAATCTTTGACTTA
AAGTCGTCTTGTTATATTTTAAATAagtgtttttcaaatattatctTTGC
GTTTTTTATATATAGTAATTAAAACTGACCTGTCAGCACTGACCTGTGAC
GTCACGTCTGTGTTTTAAACTAGCCGGCATTCCTTTGCTCACAAGTCAAG
CAAACAATAAAGCGCTTTCACAGCATTAATCTGTGATGCACATTTTGGCA
TAATactagtgtggctaactgtcGGGACATTTCTTGCGTCCTTCCAAAGA
TCATGATCTGTATTATAGTGTATGTTTTTCTATTGATTTCTTTCTAGATA
TGTTAAAAAGTTTCCACTTGAAACAGCTATAGATAGAATGTGGCTCTCTA
CTTTCAAAGAAATATTCATGCTTTCACTGTTTGCATTAGTCAAAGCACAA
AGTATGTattatgataatttatttttggCTAGATCCTGCAAGATCAATTT
TGAAATAGTTGTGTTGTTTTTCAATCAAGGATGagcatagtgcggaaagg
ggtctgatccccccccttcttaaatgatcccccctNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCTTTATAGA
TCACTGCTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043025-exon-sc0003863-1491911889:3441..3497 | TCONS_00043025-exon-sc0003863-1491911889:3441..3497 | Clytia hemisphaerica | exon |
| TCONS_00043025-exon-sc0003863-1510915933:3441..3497 | TCONS_00043025-exon-sc0003863-1510915933:3441..3497 | Clytia hemisphaerica | exon |
| TCONS_00043025-exon-sc0003863-1575043694:3441..3497 | TCONS_00043025-exon-sc0003863-1575043694:3441..3497 | Clytia hemisphaerica | exon |
| TCONS_00043025-exon-sc0003863-1491911889:5888..5991 | TCONS_00043025-exon-sc0003863-1491911889:5888..5991 | Clytia hemisphaerica | exon |
| TCONS_00043025-exon-sc0003863-1510915933:5888..5991 | TCONS_00043025-exon-sc0003863-1510915933:5888..5991 | Clytia hemisphaerica | exon |
| TCONS_00043025-exon-sc0003863-1575043694:5888..5991 | TCONS_00043025-exon-sc0003863-1575043694:5888..5991 | Clytia hemisphaerica | exon |
| TCONS_00043025-exon-sc0003863-1491911889:6940..6952 | TCONS_00043025-exon-sc0003863-1491911889:6940..6952 | Clytia hemisphaerica | exon |
| TCONS_00043025-exon-sc0003863-1510915933:6940..6952 | TCONS_00043025-exon-sc0003863-1510915933:6940..6952 | Clytia hemisphaerica | exon |
| TCONS_00043025-exon-sc0003863-1575043694:6940..6952 | TCONS_00043025-exon-sc0003863-1575043694:6940..6952 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003863 | supercontig | sc0003863:3441..6952 + |
Blast
The following BLAST results are available for this feature:
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