TCONS_00043133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043133
Unique NameTCONS_00043133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043133 ID=TCONS_00043133|Name=TCONS_00043133|organism=Clytia hemisphaerica|type=transcript|length=1109bp
CGGAATtgtaaaattaagaacattttaagaatattaaaaacaagAAGGCG
AACAACAACGACAACACTCCTACAGTTCTCGATTATgcaatttcgttttt
tttccaaaaataaagatatgtaattattatttttctaccTGACAATTTAT
GCAGCGAACAAGATAAATTTGTCAGCTTGAGTTTCGAAACAATATCGTCA
ATCGGACCAAATTGTGCAGTTATCCATTACAAACCAGAAATGGAGACAGC
GAAAGTACTCTCAGCTGATATGTATCTTTGTGATTCCGGTGGCCAATATT
TGTAAGTAATTAGGTTTCAGGGTAGAGGTTGGTACTTTGGACATGTTCAT
TAAAAAAGGCAAGTTTTTAAGGTTTCTGTGACATTTCATGCCTTTGTTAC
AAATTTATCCATTTTGATAGTTAACAATTTCTTATCGTAACTCAGATTAG
TTTGATGGTTAAGGTGAAGTGTTCTGCTTGGATAATCTAGTAATCAGAAC
TTTTGTTactttaaaatatcaaaagatatgCTAATTTGAACTTTGTACAG
TGCTGGATAATGATGTAACATCAACATTTTCAGTTAAGCTGGATAATGAT
TTCTAGATCAGCTAATCAACAATACCTATAGATATTTTGACCTATAGAAC
TTATTAAGGGTACATTGGATAATATTGtaacacaaaaattaaaatattca
cTGGATAATGATGAAACACAACTCGAAGGTCAGAATAGGCTGTTTCAAAA
TATCCAGATATTGTTAATATAAAGAGATGGTTTGAGGTAAAACTCAAACA
GTTTCTTGGCCTTAATATTTTTGCATTGGTTGGCAGAATAGGGACAATTG
CTTGGCGAGAATCGGATAATTATGTAGCATTTTTTGAGAGCTAACCTGAA
ATAGCTCGTTCAATCAACTGCCATTCATACCTCTTTACATATTCCACCAT
TTCTTTAAATGGTCTTAAAGCTTCATAGGTCTCTTTGGACAGGAGATTGA
CAAAAGCAGCACATTTTAGTTCTGTTGAACATTTGGTGCATGAAATCATT
ATTAATCGACAgattttggataattttgtaACAAAATGCGCTAAAAAAAC
ACAGATTTG
Run BLAST on NCBI

transcript from alignment at sc0003945:7239..8795-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043133 ID=TCONS_00043133|Name=TCONS_00043133|organism=Clytia hemisphaerica|type=transcript|length=1557bp|location=Sequence derived from alignment at sc0003945:7239..8795- (Clytia hemisphaerica)
CGGAATTGTAAAATTAAGAACATTTTAAGAATATTAAAAACAAGAAGGCG
AACAACAACGACAACACTCCTACAGTTCTCGATTATGCAATTTCGNAGAA
GGCGAACAACAACGACAACACTCCTACAGTTCTCGATTATGCAATTTCGT
TTTTTTTCCAAAAATAAAGATATGTAATTATTATTTTTCTACCTGACAAT
TTATGCAGCGAACAAGATAAATTTGTCAGCTTGAGTTTCGAAACAATATC
GTCAATCGGACCAAATTGTGCAGTTATCCATTACAAGTAAGCAATAATTT
TATAACAAGATACGGTTCGAAATACACTTAATGAGACAGAAGTTTAAATC
CAAATCTTTAACTCAACATCCCACTAAAGTCGAGAGGTTTCAAGAACTGT
TACCTTTGTCGTCGATAGATAAAGGATCGAATTTTGGCGGCGATCTAACT
TCATATCAAACAGCTGTATCGTCTAAGTCTAACAACTGAGATGTCGAACA
AGCGTACTGTCGAACAAGTGACCTAGGCCCATCTGGTCNGTGATATATCC
ATTAGTTTTTTGGTTTTTACATGGCTATTATTTTTATTTCAAATATACAA
GGCGCATAGTTCACAAATCATCCAAAATTTTAATATTTATTTCTTGCTCA
ATGAATAAAACTACAATTTGCTGTTTTTAGACCAGAAATGGAGACAGCGA
AAGTACTCTCAGCTGATATGTATCTTTGTGATTCCGGTGGCCAATATTTG
TAAGTAATTAGGTTTCAGGGTAGAGGTTGGTACTTTGGACATGTTCATTA
AAAAAGGCAAGTTTTTAAGGTTTCTGTGACATTTCATGCCTTTGTTACAA
ATTTATCCATTTTGATAGTTAACAATTTCTTATCGTAACTCAGATTAGTT
TGATGGTTAAGGTGAAGTGTTCTGCTTGGATAATCTAGTAATCAGAACTT
TTGTTACTTTAAAATATCAAAAGATATGCTAATTTGAACTTTGTACAGTG
CTGGATAATGATGTAACATCAACATTTTCAGTTAAGCTGGATAATGATTT
CTAGATCAGCTAATCAACAATACCTATAGATATTTTGACCTATAGAACTT
ATTAAGGGTACATTGGATAATATTGTAACACAAAAATTAAAATATTCACT
GGATAATGATGAAACACAACTCGAAGGTCAGAATAGGCTGTTTCAAAATA
TCCAGATATTGTTAATATAAAGAGATGGTTTGAGGTAAAACTCAAACAGT
TTCTTGGCCTTAATATTTTTGCATTGGTTGGCAGAATAGGGACAATTGCT
TGGCGAGAATCGGATAATTATGTAGCATTTTTTGAGAGCTAACCTGAAAT
AGCTCGTTCAATCAACTGCCATTCATACCTCTTTACATATTCCACCATTT
CTTTAAATGGTCTTAAAGCTTCATAGGTCTCTTTGGACAGGAGATTGACA
AAAGCAGCACATTTTAGTTCTGTTGAACATTTGGTGCATGAAATCATTAT
TAATCGACAGATTTTGGATAATTTTGTAACAAAATGCGCTAAAAAAACAC
AGATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026862XLOC_026862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043133-exon-sc0003945-1575043694:8749..8795TCONS_00043133-exon-sc0003945-1575043694:8749..8795Clytia hemisphaericaexon
TCONS_00043133-exon-sc0003945-1575043694:8510..8694TCONS_00043133-exon-sc0003945-1575043694:8510..8694Clytia hemisphaericaexon
TCONS_00043133-exon-sc0003945-1575043694:7239..8115TCONS_00043133-exon-sc0003945-1575043694:7239..8115Clytia hemisphaericaexon
TCONS_00043133-exon-sc0003945-1510915933:8749..8795TCONS_00043133-exon-sc0003945-1510915933:8749..8795Clytia hemisphaericaexon
TCONS_00043133-exon-sc0003945-1510915933:8510..8694TCONS_00043133-exon-sc0003945-1510915933:8510..8694Clytia hemisphaericaexon
TCONS_00043133-exon-sc0003945-1510915933:7239..8115TCONS_00043133-exon-sc0003945-1510915933:7239..8115Clytia hemisphaericaexon
TCONS_00043133-exon-sc0003945-1491911889:8749..8795TCONS_00043133-exon-sc0003945-1491911889:8749..8795Clytia hemisphaericaexon
TCONS_00043133-exon-sc0003945-1491911889:8510..8694TCONS_00043133-exon-sc0003945-1491911889:8510..8694Clytia hemisphaericaexon
TCONS_00043133-exon-sc0003945-1491911889:7239..8115TCONS_00043133-exon-sc0003945-1491911889:7239..8115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003945supercontigsc0003945:7239..8795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65077	1.30857	0.700151	1.16724	1.54163	1.80632	2.43265	2.70444	2.4822	2.04368	2.98581	2.5054	3.21122	3.02047	1.68456	1.24329	1.16296	1.6725	0.856426	1.02305	0.818272	1.31138	0.948542	1.19125	1.8199	2.79516	1.323	1.16143	1.0425	1.19108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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