TCONS_00043154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043154
Unique NameTCONS_00043154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043154 ID=TCONS_00043154|Name=TCONS_00043154|organism=Clytia hemisphaerica|type=transcript|length=264bp
gaaaataaaataatctaaCTTAGGTACAAAAGGATGTAAGTCTATGAGAA
CAAAAGTAGAAGTagaaaacagcaaatgtataaATGAATGATTGAGGTAC
TAATATAatgtaaaagaaaatctaaCTTAACTTAACTTAGGTGCCACAAA
TAGagacaaagaaaagaaacaaaaaactcaCCAGCTGGCCTGAGGTAGAA
TGCTGTAAGCAGGCAGCAGAACACAGGGTGTGTCAAGACTAACACCAACT
GTGTGAAAATGAAA
Run BLAST on NCBI

transcript from alignment at sc0003960:8327..8590

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043154 ID=TCONS_00043154|Name=TCONS_00043154|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at sc0003960:8327..8590 (Clytia hemisphaerica)
TTTCATTTTCACACAGTTGGTGTTAGTCTTGACACACCCTGTGTTCTGCT
GCCTGCTTACAGCATTCTACCTCAGGCCAGCTGGtgagttttttgtttct
tttctttgtctCTATTTGTGGCACCTAAGTTAAGTTAAGttagattttct
tttacatTATATTAGTACCTCAATCATTCATttatacatttgctgttttc
tACTTCTACTTTTGTTCTCATAGACTTACATCCTTTTGTACCTAAGttag
attattttattttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026876XLOC_026876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043154-exon-sc0003960-1491911889:8327..8590TCONS_00043154-exon-sc0003960-1491911889:8327..8590Clytia hemisphaericaexon
TCONS_00043154-exon-sc0003960-1510915933:8327..8590TCONS_00043154-exon-sc0003960-1510915933:8327..8590Clytia hemisphaericaexon
TCONS_00043154-exon-sc0003960-1575043694:8327..8590TCONS_00043154-exon-sc0003960-1575043694:8327..8590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003960supercontigsc0003960:8327..8590 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.4911	11.2961	7.19998	7.27565	0	0	0	0	6.25509	7.88179	2.68553	3.97887	1.13064	1.86196	0.855048	5.76655	4.8696	1.99447	6.45132	4.57433	7.77753	3.60868	6.31645	5.22031	1.08244	0	5.36717	5.65087	28.187	18.3472
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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