TCONS_00043168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043168
Unique NameTCONS_00043168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043168 ID=TCONS_00043168|Name=TCONS_00043168|organism=Clytia hemisphaerica|type=transcript|length=276bp
ATCGCCTTGTTTGGTCTTTTCCCCATTCCTTGCTCTCGTAAGAACCTAGC
TTTTCCTTCTAAAACAGCTCGAGAACTTGTAAACTCTCTGTCTTTAATGA
TAGAGtagttgtaatgtttttctttcaaataacgGTCAATGCCAGATTGA
AGGCTTGCTAATGAACCAGGTTCATAGTCtttaccattttgtttttttac
ttcaGCAAAGAAGCGTTGCAACATTTGGTCAAGTTCAGTTGGGTCAAGAT
TCTCGATATCCTTTGGTTGTTGTCGC
Run BLAST on NCBI

transcript from alignment at sc0003971:8503..8778

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043168 ID=TCONS_00043168|Name=TCONS_00043168|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0003971:8503..8778 (Clytia hemisphaerica)
GCGACAACAACCAAAGGATATCGAGAATCTTGACCCAACTGAACTTGACC
AAATGTTGCAACGCTTCTTTGCtgaagtaaaaaaacaaaatggtaaaGAC
TATGAACCTGGTTCATTAGCAAGCCTTCAATCTGGCATTGACcgttattt
gaaagaaaaacattacaactaCTCTATCATTAAAGACAGAGAGTTTACAA
GTTCTCGAGCTGTTTTAGAAGGAAAAGCTAGGTTCTTACGAGAGCAAGGA
ATGGGGAAAAGACCAAACAAGGCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026890XLOC_026890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043168-exon-sc0003971-1491911889:8503..8778TCONS_00043168-exon-sc0003971-1491911889:8503..8778Clytia hemisphaericaexon
TCONS_00043168-exon-sc0003971-1510915933:8503..8778TCONS_00043168-exon-sc0003971-1510915933:8503..8778Clytia hemisphaericaexon
TCONS_00043168-exon-sc0003971-1575043694:8503..8778TCONS_00043168-exon-sc0003971-1575043694:8503..8778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003971supercontigsc0003971:8503..8778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.521429	2.0339	1.18078	3.46562	2.81271	1.11132	0.670379	0	0.878797	1.08853	0	1.38908	1.04036	0.360141	0.296085	0.635488	0	1.60483	1.10858	0	1.51244	0.737716	0	0	0.559835	0.999279	0	1.5261	1.73624	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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